R: Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts

# Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts

## Documentation for package ‘AmpliconDuo’ version 1.1.1

- DESCRIPTION file

## Help Pages

AmpliconDuo-package | Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Spurious Amplicons
accepted.amplicons | List Of Amplicon Indices That Passed Filter Criteria
AmpliconDuo | Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Spurious Amplicons
ampliconduo | Apply Fisher's Exact Tests To Two Amplicon Frequency Sets Of The Same Sample
ampliconfreqs | SSU Amplicon Frequencies Of Different Sampling Sites (Short Version)
ampliconfreqs.long | SSU Amplicon Frequencies Of Different Sampling Sites
amplicons | Example List of Ampliconduo Data Frames
discordance.delta | Measure Of Discordance Between Two Amplicon Data Sets
filter.ampliconduo | AmpliconDuo Amplicon Filter
filter.ampliconduo.set | AmpliconDuo List Amplicon Filter
plotAmpliconduo | Frequeny-Frequency Plot Focusing On Significant Deviations In Amplicon Occurences
plotAmpliconduo.set | Frequeny-Frequency Plot Arrangement Focusing On Significant Deviations In Amplicon Occurences
plotORdensity | Probability Density Plot Of Odds Ratios
site.f | Sampling Site Short Names