addPloidyData	addPloidyData
cancerComps	cancerComps
cancerSigs	cancerSigs
checkCompOverlap	checkCompOverlap
collapsedSigs	collapsedSigs
compareExposures	compareExposures
compsExp	compsExp
createSigs	createSigs
defaultFeats	defaultFeats
determineNumSigs	determineNumSigs
detSigNumPipeline	detSigNumPipeline
diffCompSigSim	diffCompSigSim
extractBP10MB	featureFuncs
extractBPChrArm	featureFuncs
extractChangepoints	featureFuncs
extractCN	featureFuncs
extractCNFeats	extractCNFeats
extractOscillations	featureFuncs
extractSegsize	featureFuncs
featsExp	featsExp
findExposures	findExposures
fitComponent	fitComponent
fitModels	fitModels
generateSCM	generateSCM
matchSigs	matchSigs
plotComp	plotComp
plotComps	plotComps
plotScm	plotScm
plotSegs	plotSegs
plotSig	plotSig
plotSigExposure	plotSigExposure
plotSigExposureMat	plotSigExposureMat
plotSigMat	plotSigMat
plotSigs	plotSigs
postProb	postProb
readSegs	readSegs
reducePeaks	reducePeaks
referenceExp	referenceExp
remapResults	remapResults
runPipeline	runPipeline
scmExp	scmExp
segDataExp	segDataExp
segStats	segStats
sigExposExp	sigExposExp
sigsExp	sigsExp
sigSim	sigSim
smoothSegs	smoothSegs
sumOfPosteriors	sumOfPosteriors
validateSegData	validateSegData
