R: Ranking of Pathogen Strains

# Ranking of Pathogen Strains

## Documentation for package ‘StrainRanking’ version 1.2

- DESCRIPTION file

## Help Pages

StrainRanking-package | Ranking of Pathogen Strains
China | Compositions of Magnaporthe oryzae collected in China
Clades | Compositions of Pseudomonas syringae at the clade resolution
DG | Class '"DGobj"'
DG class | Class '"DGobj"'
DG object | Class '"DGobj"'
DGobj | Class '"DGobj"'
DGobj-class | Class '"DGobj"'
DGobj.rawdata | Construction of a DG object from raw data
DGobj.simul.mechanistic | Simulation of a DG object under a mechanistic model
DGobj.simul.regression | Simulation of a DG object under a regression model
Galibier | Compositions of Puccinia triticina in Galibier crops
generation.alpha.3strains | Generation of parameters for the simulations under the regression model
gmcpic.test | Function implementing the Generalized Monte Carlo plug-in test with calibration (GMCPIC test)
Haplotypes | Compositions of Pseudomonas syringae at the haplotype resolution
Kalango | Compositions of Puccinia triticina in Kalango crops
Madagascar | Compositions of Magnaporthe oryzae collected in Madagascar
MoryzaeChina | Compositions of Magnaporthe oryzae collected in China
MoryzaeMadagascar | Compositions of Magnaporthe oryzae collected in Madagascar
names-method | Class '"DGobj"'
PathogenCompositionMoryzaeChina | Compositions of Magnaporthe oryzae collected in China
PathogenCompositionMoryzaeMadagascar | Compositions of Magnaporthe oryzae collected in Madagascar
PathogenCompositionPsyringaeClades | Compositions of Pseudomonas syringae at the clade resolution
PathogenCompositionPsyringaeHaplotypes | Compositions of Pseudomonas syringae at the haplotype resolution
PathogenCompositionPsyringaePhylogroups | Compositions of Pseudomonas syringae at the phylogroup resolution
PathogenCompositionPtriticinaGalibier | Compositions of Puccinia triticina in Galibier crops
PathogenCompositionPtriticinaKalango | Compositions of Puccinia triticina in Kalango crops
Phylogroups | Compositions of Pseudomonas syringae at the phylogroup resolution
powderymildew | Demographic and genetic real data
PsyringaeClades | Compositions of Pseudomonas syringae at the clade resolution
PsyringaeHaplotypes | Compositions of Pseudomonas syringae at the haplotype resolution
PsyringaePhylogroups | Compositions of Pseudomonas syringae at the phylogroup resolution
PtriticinaGalibier | Compositions of Puccinia triticina in Galibier crops
PtriticinaKalango | Compositions of Puccinia triticina in Kalango crops
ranking.strains | Method for ranking pathogen strains
show-method | Class '"DGobj"'
StrainRanking | Ranking of Pathogen Strains
summary-method | Class '"DGobj"'
[-method | Class '"DGobj"'
[<--method | Class '"DGobj"'