R: Insertion/Deletion Dynamics for Transposable Elements

# Insertion/Deletion Dynamics for Transposable Elements

## Documentation for package ‘TE’ version 0.3-0

- DESCRIPTION file

## Help Pages

TE-package | TE: Insertion/Deletion Dynamics for Transposable Elements
AetLTR | LTR retrotransposons in _Aegilops tauschii_
AlyLTR | LTR retrotransposons in _Arabidopsis lyrata_
EstDynamics | Estimate TE dynamics using mismatch data
EstDynamics2 | Estimate TE dynamics using mismatch data
MasterGene | Implements the master gene model in Marchani et al (2009)
MatrixModel | Implements the matrix model in Promislow et al (1999)
nbLackOfFitKL | Calcualte the KL divergence of a negative binomial fit to the mismatch data.
PlotFamilies | Plot the age distributions or insertion rates for multiple families.
print.TEfit | Print a TEfit or TEfit2 object
print.TEfit2 | Print a TEfit or TEfit2 object
SensitivityPlot | Generate sensitivity plots
TE | TE: Insertion/Deletion Dynamics for Transposable Elements