AddAdj                  Calculate the adjacency matrix given a spatial
                        coordinate matrix
AddCluster              Find clusters for SRT data
Addcoord2embed          Add the spatial coordinates to the reduction
                        slot
AggregationScore        Calculate the aggregation score for specific
                        clusters
CosMx_subset            A CosMix spatial transcriptomics data
NCFM                    Cell-feature coembedding for scRNA-seq data
coFAST                  Cell-feature coembedding for SRT data
coembed_plot            Coembedding dimensional reduction plot
coembedding_umap        Calculate UMAP projections for coembedding of
                        cells and features
diagnostic.cor.eigs     Determine the dimension of low dimensional
                        embedding
find.signature.genes    Find the signature genes for each group of
                        cell/spots
get.top.signature.dat   Obtain the top signature genes and related
                        information
pbmc3k_subset           A toy single-cell RNA-seq data
pdistance               Calculate the cell-feature distance matrix
top5_signatures         A dataframe including top five signature genes
