# Generated by roxygen2: do not edit by hand

S3method(diagnostic.cor.eigs,Seurat)
S3method(diagnostic.cor.eigs,default)
export(AddAdj)
export(AddCluster)
export(Addcoord2embed)
export(AggregationScore)
export(NCFM)
export(coFAST)
export(coembed_plot)
export(coembedding_umap)
export(diagnostic.cor.eigs)
export(find.signature.genes)
export(get.top.signature.dat)
export(pdistance)
import(ggplot2)
import(progress)
importFrom(DR.SC,getAdj_auto)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(PRECAST,getAdj_fixedNumber)
importFrom(PRECAST,getAdj_reg)
importFrom(ProFAST,FAST_run)
importFrom(Rcpp,evalCpp)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Embeddings)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,Loadings)
importFrom(Seurat,`Idents<-`)
importFrom(ade4,mstree)
importFrom(dplyr,`%>%`)
importFrom(furrr,furrr_options)
importFrom(furrr,future_map)
importFrom(future,plan)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(irlba,irlba)
importFrom(pbapply,pblapply)
importFrom(stats,as.dist)
importFrom(stats,cov)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,rnorm)
importFrom(utils,head)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
useDynLib(coFAST, .registration = TRUE)
