#:GATKReport.v1.1:5
#:GATKTable:20:2:%s:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:;
#:GATKTable:GenotypeConcordance_CompProportions:Per-sample concordance tables: proportions of genotypes called in comp
Sample   NO_CALL_HOM_REF  NO_CALL_HET  NO_CALL_HOM_VAR  HOM_REF_HOM_REF  HOM_REF_HET  HOM_REF_HOM_VAR  HET_HOM_REF  HET_HET  HET_HOM_VAR  HOM_VAR_HOM_REF  HOM_VAR_HET  HOM_VAR_HOM_VAR  UNAVAILABLE_HOM_REF  UNAVAILABLE_HET  UNAVAILABLE_HOM_VAR  MIXED_HOM_REF  MIXED_HET  MIXED_HOM_VAR  Mismatching_Alleles
ALL                0.000        0.000            0.000            0.000        0.000            0.000        0.000    0.007        0.000            0.000        0.001            0.013                0.000            0.992                0.986          0.000      0.000          0.000                0.000
NA12878            0.000        0.000            0.000            0.000        0.000            0.000        0.000    0.007        0.000            0.000        0.001            0.013                0.000            0.992                0.986          0.000      0.000          0.000                0.000

#:GATKTable:38:2:%s:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:%d:;
#:GATKTable:GenotypeConcordance_Counts:Per-sample concordance tables: comparison counts
Sample   NO_CALL_NO_CALL  NO_CALL_HOM_REF  NO_CALL_HET  NO_CALL_HOM_VAR  NO_CALL_UNAVAILABLE  NO_CALL_MIXED  HOM_REF_NO_CALL  HOM_REF_HOM_REF  HOM_REF_HET  HOM_REF_HOM_VAR  HOM_REF_UNAVAILABLE  HOM_REF_MIXED  HET_NO_CALL  HET_HOM_REF  HET_HET  HET_HOM_VAR  HET_UNAVAILABLE  HET_MIXED  HOM_VAR_NO_CALL  HOM_VAR_HOM_REF  HOM_VAR_HET  HOM_VAR_HOM_VAR  HOM_VAR_UNAVAILABLE  HOM_VAR_MIXED  UNAVAILABLE_NO_CALL  UNAVAILABLE_HOM_REF  UNAVAILABLE_HET  UNAVAILABLE_HOM_VAR  UNAVAILABLE_UNAVAILABLE  UNAVAILABLE_MIXED  MIXED_NO_CALL  MIXED_HOM_REF  MIXED_HET  MIXED_HOM_VAR  MIXED_UNAVAILABLE  MIXED_MIXED  Mismatching_Alleles
ALL                    0                0            0                0                    0              0                0                0            0                0                    0              0            0            0    13463           90             3901          0                0                0         2935            18144                 4448              0                    0                    0          2053693              1326112                    11290                  0              0              0          0              0                  0            0                   16
NA12878                0                0            0                0                    0              0                0                0            0                0                    0              0            0            0    13463           90             3901          0                0                0         2935            18144                 4448              0                    0                    0          2053693              1326112                    11290                  0              0              0          0              0                  0            0                   16

#:GATKTable:20:2:%s:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:%.3f:;
#:GATKTable:GenotypeConcordance_EvalProportions:Per-sample concordance tables: proportions of genotypes called in eval
Sample   HOM_REF_NO_CALL  HOM_REF_HOM_REF  HOM_REF_HET  HOM_REF_HOM_VAR  HOM_REF_UNAVAILABLE  HOM_REF_MIXED  HET_NO_CALL  HET_HOM_REF  HET_HET  HET_HOM_VAR  HET_UNAVAILABLE  HET_MIXED  HOM_VAR_NO_CALL  HOM_VAR_HOM_REF  HOM_VAR_HET  HOM_VAR_HOM_VAR  HOM_VAR_UNAVAILABLE  HOM_VAR_MIXED  Mismatching_Alleles
ALL                0.000            0.000        0.000            0.000                0.000          0.000        0.000        0.000    0.771        0.005            0.224      0.000            0.000            0.000        0.115            0.711                0.174          0.000                0.000
NA06989            0.000            0.000        0.000            0.000                0.000          0.000        0.000        0.000    0.771        0.005            0.224      0.000            0.000            0.000        0.115            0.711                0.174          0.000                0.000

#:GATKTable:4:2:%s:%.3f:%.3f:%.3f:;
#:GATKTable:GenotypeConcordance_Summary:Per-sample summary statistics: NRS, NRD, and OGC
Sample   Non-Reference Sensitivity  Non-Reference Discrepancy  Overall_Genotype_Concordance
ALL                          0.010                      0.087                         0.913
NA06989                      0.010                      0.087                         0.913

#:GATKTable:6:1:%d:%d:%d:%d:%d:%d:;
#:GATKTable:SiteConcordance_Summary:Site-level summary statistics
ALLELES_MATCH  EVAL_SUPERSET_TRUTH  EVAL_SUBSET_TRUTH  ALLELES_DO_NOT_MATCH  EVAL_ONLY  TRUTH_ONLY
        34632                    0                  0                    16       8349     3391095

