R: Distributions for Ecological Models in 'nimble'

# Distributions for Ecological Models in 'nimble'

## Documentation for package ‘nimbleEcology’ version 0.5.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

D N R

## -- D --

dBetaBinom | A beta binomial distribution and beta function for use in 'nimble' models
dBetaBinom_s | A beta binomial distribution and beta function for use in 'nimble' models
dBetaBinom_v | A beta binomial distribution and beta function for use in 'nimble' models
dCJS | Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_ss | Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_sv | Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_vs | Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_vv | Cormack-Jolly-Seber distribution for use in 'nimble' models
dDHMM | Dynamic Hidden Markov Model distribution for use in 'nimble' models
dDHMMo | Dynamic Hidden Markov Model distribution for use in 'nimble' models
dDynOcc | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_ssm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_sss | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_ssv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svs | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vsm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vss | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vsv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvs | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dHMM | Hidden Markov Model distribution for use in 'nimble' models
dHMMo | Hidden Markov Model distribution for use in 'nimble' models
dNmixture | dNmixture distribution for use in 'nimble' models
dNmixtureAD | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBNB_oneObs | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBNB_s | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBNB_v | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBP_oneObs | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBP_s | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBP_v | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BNB_oneObs | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BNB_s | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BNB_v | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_s | N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_v | N-mixture distributions with AD support for use in 'nimble' models
dNmixture_BBNB_oneObs | dNmixture distribution for use in 'nimble' models
dNmixture_BBNB_s | dNmixture distribution for use in 'nimble' models
dNmixture_BBNB_steps | Internal helper nimbleFunctions for dNmixture distributions
dNmixture_BBNB_v | dNmixture distribution for use in 'nimble' models
dNmixture_BBP_oneObs | dNmixture distribution for use in 'nimble' models
dNmixture_BBP_s | dNmixture distribution for use in 'nimble' models
dNmixture_BBP_steps | Internal helper nimbleFunctions for dNmixture distributions
dNmixture_BBP_v | dNmixture distribution for use in 'nimble' models
dNmixture_BNB_oneObs | dNmixture distribution for use in 'nimble' models
dNmixture_BNB_s | dNmixture distribution for use in 'nimble' models
dNmixture_BNB_steps | Internal helper nimbleFunctions for dNmixture distributions
dNmixture_BNB_v | dNmixture distribution for use in 'nimble' models
dNmixture_s | dNmixture distribution for use in 'nimble' models
dNmixture_steps | Internal helper nimbleFunctions for dNmixture distributions
dNmixture_v | dNmixture distribution for use in 'nimble' models
dOcc | Occupancy distribution suitable for use in 'nimble' models
dOcc_s | Occupancy distribution suitable for use in 'nimble' models
dOcc_v | Occupancy distribution suitable for use in 'nimble' models

## -- N --

nimBetaFun | A beta binomial distribution and beta function for use in 'nimble' models
nimNmixPois_logFac | Internal helper nimbleFunctions for dNmixture distributions

## -- R --

rBetaBinom_s | A beta binomial distribution and beta function for use in 'nimble' models
rBetaBinom_v | A beta binomial distribution and beta function for use in 'nimble' models
rCJS_ss | Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_sv | Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_vs | Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_vv | Cormack-Jolly-Seber distribution for use in 'nimble' models
rDHMM | Dynamic Hidden Markov Model distribution for use in 'nimble' models
rDHMMo | Dynamic Hidden Markov Model distribution for use in 'nimble' models
rDynOcc_ssm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_sss | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_ssv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svs | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vsm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vss | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vsv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvm | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvs | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvv | Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_**' and 'rDynOcc_**' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rHMM | Hidden Markov Model distribution for use in 'nimble' models
rHMMo | Hidden Markov Model distribution for use in 'nimble' models
rNmixtureAD_BBNB_oneObs | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBNB_s | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBNB_v | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBP_oneObs | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBP_s | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBP_v | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BNB_oneObs | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BNB_s | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BNB_v | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_s | N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_v | N-mixture distributions with AD support for use in 'nimble' models
rNmixture_BBNB_oneObs | dNmixture distribution for use in 'nimble' models
rNmixture_BBNB_s | dNmixture distribution for use in 'nimble' models
rNmixture_BBNB_v | dNmixture distribution for use in 'nimble' models
rNmixture_BBP_oneObs | dNmixture distribution for use in 'nimble' models
rNmixture_BBP_s | dNmixture distribution for use in 'nimble' models
rNmixture_BBP_v | dNmixture distribution for use in 'nimble' models
rNmixture_BNB_oneObs | dNmixture distribution for use in 'nimble' models
rNmixture_BNB_s | dNmixture distribution for use in 'nimble' models
rNmixture_BNB_v | dNmixture distribution for use in 'nimble' models
rNmixture_s | dNmixture distribution for use in 'nimble' models
rNmixture_v | dNmixture distribution for use in 'nimble' models
rOcc_s | Occupancy distribution suitable for use in 'nimble' models
rOcc_v | Occupancy distribution suitable for use in 'nimble' models