R: Mutation Models for Pedigree Likelihood Computations

# Mutation Models for Pedigree Likelihood Computations

## Documentation for package ‘pedmut’ version 0.9.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

adjustRate | Adjust the overall mutation rate of a model
alwaysLumpable | Mutation model properties
findStationary | Find the stationary frequency distribution
getParams | Get model parameters
isBounded | Mutation model properties
isLumpable | Mutation model properties
isMutationMatrix | Test for mutation matrix/model
isMutationModel | Test for mutation matrix/model
isReversible | Mutation model properties
isStationary | Mutation model properties
lumpedMatrix | Combine alleles in a mutation matrix
lumpedModel | Combine alleles in a mutation matrix
lumpMutSpecial | Special lumping of mutation models
makeReversible | Transformations to reversibility
makeStationary | Transformation (stabilisation) to stationarity
maxRate | Upper limits for overall mutation rate for the stepwise reversible model.
model_properties | Mutation model properties
mutationMatrix | Mutation matrix
mutationModel | Mutation models
mutRate | Overall mutation rate
sexEqual | Mutation models
stabilize | Stabilization of mutation matrix
stepwiseReversible | Dawid's reversible stepwise model
validateMutationMatrix | Mutation matrix
validateMutationModel | Mutation models