R: 'PLINK' (and 'GCTA') File Helpers

# 'PLINK' (and 'GCTA') File Helpers

## Documentation for package ‘plinkFile’ version 0.2.1

- DESCRIPTION file

## Help Pages

bed | travers variants in a PLINK1 BED fileset
CHR | A dictionary to map chromosome names to integers.
DBT | A decoding byte table to map raw intergers to genotype dosages.
loopBED | travers variants in a PLINK1 BED fileset
readBED | Read BED file
readBIM | Read BIM file
readBSM | Read Binary Symmetric Matrix (BSM)
readFAM | Read FAM file
readGRM | Read Genetic Related Matrix (GRM) of GCTA
readIBS | Read PLINK Binary IBS matrix
readIID | read individual ID
readREL | Read PLINK Binary REL matrix
readVCM | Read Variant Count Matrix (VCM) accompanying a GCTA GRM
readVID | read variant ID
saveBED | Save BED file
saveBSM | Save Symmetric Matrix to Binary
saveGRM | Save symmetic matrix to GCTA GRM format.
scanBED | travers variants in a PLINK1 BED fileset
testReadBED | Test BED Reader
testReadBSM | Test Genetic Relatedness Matrix Reader