alien                   Alien Mammals dataset: Example dataset for the
                        package sensiPhy
alien.data              Alien Mammals dataset: Example dataset for the
                        package sensiPhy
alien.phy               Alien Mammals dataset: Example dataset for the
                        package sensiPhy
clade_continuous        Influential Clade Detection - Trait Evolution
                        Continuous Characters
clade_discrete          Influential Clade Detection - Trait Evolution
                        Discrete Characters
clade_phyglm            Estimate the impact on model estimates of
                        phylogenetic logistic regression after removing
                        clades from the analysis.
clade_phylm             Influential clade detection - Phylogenetic
                        Linear Regression
clade_physig            Influential clade detection - Phylogenetic
                        signal
influ_continuous        Influential Species Detection - Trait Evolution
                        Continuous Characters
influ_discrete          Influential Species Detection - Trait Evolution
                        Discrete Characters
influ_phyglm            Influential species detection - Phylogenetic
                        Logistic Regression
influ_phylm             Influential species detection - Phylogenetic
                        Linear Regression
influ_physig            Influential species detection - Phylogenetic
                        signal
intra_clade_phyglm      Interaction between intraspecific variability
                        and influential clade detection - Phylogenetic
                        Logistic Regression
intra_clade_phylm       Interaction between intraspecific variability
                        and influential clade detection - Phylogenetic
                        Linear Regression
intra_influ_phyglm      Interaction between intraspecific variability
                        and influential species - Phylogenetic Logistic
                        Regression
intra_influ_phylm       Interaction between intraspecific variability
                        and influential species - Phylogenetic Linear
                        Regression
intra_phyglm            Intraspecific variability - Phylogenetic
                        Logistic Regression
intra_phylm             Intraspecific variability - Phylogenetic Linear
                        Regression
intra_physig            Intraspecific variability - Phylogenetic signal
intra_samp_phyglm       Interaction between intraspecific variability
                        and species sampling - Phylogenetic Logistic
                        Regression
intra_samp_phylm        Interaction between intraspecific variability
                        and species sampling - Phylogenetic Linear
                        Regression
match_dataphy           Match data and phylogeny based on model formula
miss.phylo.d            Phylogenetic signal in missing data
primates                Primates dataset: Example dataset for the
                        package sensiPhy
primates.data           Primates dataset: Example dataset for the
                        package sensiPhy
primates.phy            Primates dataset: Example dataset for the
                        package sensiPhy
samp_continuous         Species Sampling uncertainty - Trait Evolution
                        Continuous Characters
samp_discrete           Species Sampling uncertainty - Trait Evolution
                        Discrete Characters
samp_phyglm             Sensitivity Analysis Species Sampling -
                        Phylogenetic Logistic Regression
samp_phylm              Sensitivity Analysis Species Sampling -
                        Phylogenetic Linear Regression
samp_physig             Sensitivity Analysis Species Sampling -
                        Phylogenetic signal
sensiPhy                Sensitivity Analysis for Comparative Methods
sensi_plot              Graphical sensitivity analysis for comparative
                        methods
sensi_plot.clade.physig
                        Graphical diagnostics for class 'clade.physig'
sensi_plot.influ.physig
                        Graphical diagnostics for class 'influ.physig'
sensi_plot.intra.physig
                        Graphical diagnostics for class 'intra.physig'
sensi_plot.samp.physig
                        Graphical diagnostics for class 'samp.physig'
sensi_plot.sensiClade   Graphical diagnostics for class 'sensiClade'
sensi_plot.sensiClade.TraitEvol
                        Graphical diagnostics for class
                        'sensiClade.TraitEvol'
sensi_plot.sensiInflu   Graphical diagnostics for class 'sensiInflu'
sensi_plot.sensiInflu.TraitEvol
                        Graphical diagnostics for class
                        'sensiInflu.TraitEvol'
sensi_plot.sensiIntra   Graphical diagnostics for class 'sensiIntra'
sensi_plot.sensiIntra_Clade
                        Graphical diagnostics for class
                        'sensiIntra_Clade'
sensi_plot.sensiIntra_Influ
                        Graphical diagnostics for class
                        'sensiIntra_Influ'
sensi_plot.sensiIntra_Samp
                        Graphical diagnostics for class
                        'sensiIntra_Samp' and 'sensiTree_samp'
sensi_plot.sensiSamp    Graphical diagnostics for class 'sensiSamp'
sensi_plot.sensiSamp.TraitEvol
                        Graphical diagnostics for class
                        'sensiSamp.TraitEvol'
sensi_plot.sensiTree    Graphical diagnostics for class 'sensiTree'
sensi_plot.sensiTree.TraitEvol
                        Graphical diagnostics for class
                        'sensiTree.TraitEvol'
sensi_plot.sensiTree_Clade
                        Graphical diagnostics for class
                        'sensiTree_Clade'
sensi_plot.sensiTree_Influ
                        Graphical diagnostics for class
                        'sensiTree_Influ'
sensi_plot.sensiTree_Intra
                        Graphical diagnostics for class
                        'sensiIntra_Tree'
sensi_plot.sensiTree_Samp
                        Graphical diagnostics for class
                        'sensiTree_samp'
sensi_plot.tree.bd      Graphical diagnostics for class 'tree.physig'
sensi_plot.tree.physig
                        Graphical diagnostics for class 'tree.physig'
tree_bd                 Phylogenetic uncertainty - net diversification
                        rate
tree_clade_phyglm       Interaction between phylogenetic uncertainty
                        and influential clade detection - Phylogenetic
                        Logistic Regression
tree_clade_phylm        Interaction between phylogenetic uncertainty
                        and influential clade detection - Phylogenetic
                        Linear Regression
tree_continuous         Phylogenetic uncertainty - Trait Evolution
                        Continuous Characters
tree_discrete           Phylogenetic uncertainty - Trait Evolution
                        Discrete Characters
tree_influ_phyglm       Interaction between phylogenetic uncertainty
                        and influential species detection -
                        Phylogenetic Logistic Regression
tree_influ_phylm        Interaction between phylogenetic uncertainty
                        and influential species detection -
                        Phylogenetic Linear Regression
tree_intra_phyglm       Interaction between phylogenetic uncertainty
                        and intraspecific variability - Phylogenetic
                        logistic Regression
tree_intra_phylm        Interaction between phylogenetic uncertainty
                        and intraspecific variability - Phylogenetic
                        Linear Regression
tree_phyglm             Phylogenetic uncertainty - Phylogenetic
                        Logistic Regression
tree_phylm              Phylogenetic uncertainty - Phylogenetic Linear
                        Regression
tree_physig             Phylogenetic uncertainty - Phylogenetic signal
tree_samp_phyglm        Interaction between phylogenetic uncertainty
                        and sensitivity to species sampling -
                        Phylogenetic Logistic Regression
tree_samp_phylm         Interaction between phylogenetic uncertainty
                        and sensitivity to species sampling -
                        Phylogenetic Linear Regression
