Aijfcn                  A function to calculate the nitrogen surplus or
                        deficit each species gets from consuming
                        another species
Andres2016              The soil food webs published for grazed and
                        ungrazed plots in the Shortgrass Steppe
                        long-term research station.
CNsim                   A function to simulate the dynamics over time
                        wrapping getPARAMS and foodwebode
Cijfcn                  A utility function to calculate the consumption
                        rate of each species on all prey assuming a
                        type I functional response.
Holtkamp2011            The soil food webs published along a
                        chronosequence in the Netherlands.
Hunt1987                The soil food web published for CPER
Jacobsindex             Calculate Jacob's index.
Koltz2018               The soil food web published for an Arctic
                        Tundra site
RESCALE                 A function to rescale a vector.
TLcheddar               Calculates the trophic level for each
                        tropospecies
TLsort                  Sorts the trophic levels from lowest to highest
build_foodweb           A function to compile the food web from simple
                        data inputs
calc_smin               Calculate the strength of stability as smin.
calculate_inputs        A function to calculate the inputs and outputs
                        at equilibrium and print them for the user.
calculate_smin          Function used inside the calc_smin function
can_mutfeed             A function that identifies cannibalism and
                        mutual feeding
checkcomm               A function check the community for errors
                        before it is used in calculations.
checkeqm                Check the carbon flux equilibrium output by
                        comana.
comana                  A function to calculate carbon and nitrogen
                        fluxes in the food web.
comtrosp                A function to combine trophic species.
correct_diet            A function to correct the diet of trophic
                        species.
correction_function     A function to correct stoichiometry dynamically
corrstoich              Correct stoichiometry
deRuiter1994            The soil food webs published for conventional
                        (CON) and integrated (INT) management at
                        Lovinkhoeve experimental farm.
decompexpt              Decomposition rates and effect of individual
                        organisms
foodwebode              A function to simulation the food webs away
                        from equilibrium.
getPARAMS               A function to get the parameters for a food web
                        model.
intro_comm              A baseline community for examples
newnode                 Add node to the community
parameter_uncertainty   Parameter uncertainty returns community with
                        new parameters drawn from a distribution of
                        choice
productionadj           A function to fix production efficiency.
removenodes             Remove nodes from community.
renamenode              Rename a node in a community.
stability               Calculates the stability of the food web
stability2              A function to run the stability analysis using
                        the numerical simulation of the Jacobain
                        matrix.
whomineralizes          Direct and indirect contributions to
                        mineralizations
