Package: symphony
Title: Efficient and Precise Single-Cell Reference Atlas Mapping
Version: 0.1.2
Authors@R: c(
    person(given = "Joyce", family = "Kang",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0002-1962-1291"),
           email = "joyce_kang@hms.harvard.edu"),
    person("Ilya", "Korsunsky", email = "ilya.korsunsky@gmail.com", 
           role = c("aut"), comment = c(ORCID = "0000-0003-4848-3948")),
    person("Soumya", "Raychaudhuri", 
        role = c("aut"), comment = c(ORCID = "0000-0002-1901-8265"))
    )
Description: Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, testthat, ggthemes, ggrepel, ggrastr
LinkingTo: Rcpp, RcppArmadillo
Imports: methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr,
        ggplot2, stats, utils, magrittr, data.table, tibble, Matrix,
        tidyr, rlang, RColorBrewer, RANN
VignetteBuilder: knitr
Depends: R (>= 3.5)
NeedsCompilation: yes
Packaged: 2025-10-31 02:00:35 UTC; joyce
Author: Joyce Kang [aut, cre] (ORCID: <https://orcid.org/0000-0002-1962-1291>),
  Ilya Korsunsky [aut] (ORCID: <https://orcid.org/0000-0003-4848-3948>),
  Soumya Raychaudhuri [aut] (ORCID:
    <https://orcid.org/0000-0002-1901-8265>)
Maintainer: Joyce Kang <joyce_kang@hms.harvard.edu>
Repository: CRAN
Date/Publication: 2025-10-31 03:20:02 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-25 13:27:58 UTC; unix
Archs: symphony.so.dSYM
