check_coverage          Check whether a taxon is covered by The
                        Taxonomicon
clear_cache             Clear the taxodist lineage cache
closest_relative        Find the closest relative of a taxon among a
                        set of candidates
compare_lineages        Compare lineages of two taxa side by side
distance_matrix         Compute pairwise taxonomic distances for a set
                        of taxa
filter_clade            Filter a vector of taxa to those belonging to a
                        given clade
get_lineage             Retrieve the full taxonomic lineage of a taxon
                        by name
get_lineage_by_id       Retrieve the full taxonomic lineage of a taxon
get_taxonomicon_id      Find the Taxonomicon ID for a taxon name
is_member               Test whether one taxon is nested within another
lineage_depth           Get the lineage depth of a taxon
load_cache              Load a previously saved taxodist cache from
                        disk
mrca                    Compute the most recent common ancestor of two
                        taxa
plot.taxodist_cluster   Plot method for taxodist_cluster objects
plot.taxodist_ord       Plot method for taxodist_ord objects
print.taxodist_path     Print method for taxodist_path objects
print.taxodist_result   Print method for taxodist distance results
save_cache              Save the taxodist lineage cache to disk
shared_clades           List all clades shared between two taxa
summary.taxodist_ord    Summary method for taxodist_ord objects
taxo_cluster            Cluster taxa by taxonomic distance
taxo_distance           Compute the phylogenetic distance between two
                        taxa
taxo_heatmap            Plot a taxonomic heatmap
taxo_ordinate           Ordinate taxa in taxonomic distance space
taxo_path               Get the taxonomic path between two taxa
taxodist-package        taxodist: Taxonomic Distance and Phylogenetic
                        Lineage Computation
