GT.chld.hsld            2009 A/H1N1 observed generation time
                        distribution
Germany.1918            Germany 1918 dataset
H1N1.serial.interval    H1N1 serial interval
est.GT                  Estimate generation time distribution
estimate.R              Estimate reproduction number (R0 or Rt) for one
                        incidence dataset using available methods
generation.time         Generation Time distribution
impute.incid            Impute censored cases to rebuild longer
                        epidemic vector
inspect.data            Audit input data for common issues
integrity.checks        Integrity checks for input parameters
sa.GT                   Sensitivity of R0 to varying generation time
                        distributions
sa.time                 Sensitivity of R0 to time estimation windows
sensitivity.analysis    Sensitivity analysis of basic reproduction
                        ratio to begin/end dates
sim.epid                Epidemic outbreak simulation
sim.epid.indiv          Influenza-like illness simulation
                        (individual-based model)
smooth.Rt               Smooth real-time reproduction number over
                        larger time periods
