auto_geo_group          auto_geo_group
box_surv                box_surv
cod                     cod
cor.full                cor.test for all variables
cor.one                 cor.test for one variable with all variables
corheatmap              corheatmap
corscatterplot          corscatterplot
deg                     deg
deseq_data              deseq_data
double_enrich           draw enrichment bar plots for both up and down
                        genes
draw_KM                 draw_KM
draw_boxplot            draw boxplot for expression
draw_heatmap            draw a heatmap plot
draw_heatmap2           draw heatmap plots
draw_pca                draw PCA plots
draw_tsne               draw_tsne
draw_venn               draw a venn plot
draw_volcano            draw a volcano plot
draw_volcano2           draw_volcano2
dumd                    count unique values in every columns for
                        data.frame
edges_to_nodes          edges_to_nodes
exists_anno_list        exists_anno_list
exp_boxplot             exp_boxplot
exp_hub1                exp_hub1
exp_surv                exp_surv
exprSet_hub1            exprSet_hub1
find_anno               Find an annotation table for a GEO platform
                        accession.
genes                   genes
geo_download            geo_download
geo_parser              geo_parser
get_cgs                 get_cgs
get_count_txt           get count from GEO
get_deg                 get_deg
get_deg_all             get_deg_all
get_gpl_txt             get gpl txt from GEO
get_ids                 Get probe-to-symbol ids for a GEO platform
                        accession.
ggheat                  ggheat
hypertest               hypertest
interaction_to_edges    interaction_to_edges
intersect_all           intersect_all
lnc_anno                lnc_anno
mRNA_anno               mRNA_anno
make_tcga_group         make_tcga_group
match_exp_cl            match_exp_cl
meta1                   meta1
multi_deg               multi_deg
multi_deg_all           multi_deg_all
pkg_all                 pkg_all
plcortest               plcortest
plot_deg                plot_deg
point_cut               point_cut
print.geo_auto_group    Print a GEO auto-group result
quick_enrich            quick_enrich
risk_plot               risk_plot
sam_filter              sam_filter
surv_KM                 surv_KM
surv_cox                surv_cox
t_choose                t_choose
trans_array             trans_array
trans_ensembl_exp       trans_ensembl_exp
trans_entrezexp         trans_entrezexp
trans_exp               trans_exp
trans_exp_new           trans_exp_new
union_all               union_all
