# BioUtils 0.0.1

## Initial release

### Features
- Load and parse GEO SOFT files (`load.geo.soft`)
- Extract expression, phenotype, and gene annotation data (`extract.expression`)
- Perform differential expression analysis using limma (`run.limma.de`)
- Visualize results with PCA and volcano plots
- Conduct single-gene statistical analysis (`analyze.gene`)
- Generate gene-level visualizations (`gene.analysis.plot`)
- Compute gene correlation matrices and heatmaps
- Perform Gene Set Enrichment Analysis (`run.gsea`)
- Fit LASSO models for multi-gene biomarker discovery (`fit.lasso`)

### Documentation
- Added full pkgdown website
- Added case study vignette on renal cell carcinoma transcriptomics

# BioUtils 0.1.1

## Working release

### Features
No features were changed

### Documentation
- Added an additional vignette to show extensions upon the package particularly
  relating to visual analytics
