859dbdbe6b69972d76e18eb42e370a1a *DESCRIPTION
d9425718e7a49d5a5e55f20b2b14805f *NAMESPACE
6250176b9432725ca81af491704c4b2b *R/RcppExports.R
2c99bb3923c46b2d84937b60a76e1531 *R/ancestry_module.R
945687b1d78ee482d146b164138c13b3 *R/calculate_allele_frequencies.R
16b85cbc3f01d1db2db5f392563486a2 *R/calculate_frequencies.R
307a8a41ba844c1f6858c4ff6d507574 *R/calculate_fst.R
9deb94c9f884cabf5104314d85ec94f1 *R/calculate_heterozygosity.R
774915ccdf527c9b7d5c007f1dfbfb6e *R/calculate_ld.R
24fdd43981b12b5c374b100e40d4ec75 *R/calculate_marker_frequency.R
0374086d75e5b24ad855852199d1484a *R/create_input_data.R
71e9a92d732f3851972d2eb5bc65c18c *R/create_iso_female.R
713601994f25cf3b5006f72f78eb3f4d *R/create_iso_female_data.R
7ac579ba688ea5114031d0eb3e0c9985 *R/data.R
e5d54944d4b03a5ce9367b0b2e4854e1 *R/default_params_doc.R
c2d17d222664207dae55941303a545a6 *R/joyplot_frequencies.R
fba84ae4dd685544c435d979ca5a26ef *R/junctions.R
07f53e7a657a7f68a833786490490f4b *R/migration_settings.R
52b67bd537ea9f55a00700c8695e6dc7 *R/plot_chromosome.R
2e8fd451e5619b4bfb2b7496c59497e8 *R/plot_difference_frequencies.R
4ee1500b6a3ee5007b31f5e8f38d002e *R/plot_frequencies.R
61d6b2ac0eb9702772b69aa6b661bdd0 *R/plot_over_time.R
5d77736c7af2141afd659f3ab21a6b97 *R/plot_start_end.R
ef5dea24ad579515896d43e111dac04f *R/save_load.R
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a517ec27937ed9e8ce3bfa82f47a258e *R/simulate_admixture.R
df315278f3c4b84f2f81bfbe0a8e90a1 *R/simulate_ancestry.R
8feb2fb267d576d845b1bfade62b30f0 *R/simulate_ancestry_migration.R
32f76acf01080da846d388c241daed24 *R/simulate_ancestry_until.R
9f5bfdb97bddebc96bc46560f12c0a01 *R/simulate_sequence.R
538449126589bf53276f816039b4ba0c *R/simulate_sequence_migration.R
5c6d977cb2526b2894bc7fa2787d3beb *R/simulate_sequence_until.R
8a22e92649162b80fbb5591732a6c883 *R/utilities.R
106fddd063a5d7e01009633c9ed56390 *README.md
16be7ecc9e0201843770c14dba38d5cb *build/vignette.rds
eb58c0531f57b4bbb4e5cf3c958b8896 *data/dgrp2.3R.5k.data.rda
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848fe075ed9da1cec23c4a83f9bf5b37 *inst/doc/Empirical_data.R
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589a5b7bfdd5dff9aa6b6739b968ea1b *inst/doc/Visualization.html
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4a9b731abee9c0f5e0ffa0c2cc1d0923 *inst/doc/Walkthrough.html
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790975f96816121022a027f671db5f4f *man/calculate_dist_junctions.Rd
1b5acaffabd26ad3b8bab60e9c430dfe *man/calculate_fst.Rd
7ecf7289ef0eb3fa63ea6de3b16b91ec *man/calculate_heterozygosity.Rd
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bd9799b5f3756bb383e4a7771c0bd56a *man/calculate_marker_frequency.Rd
1ca714d518264bce35202067e17c4aa3 *man/combine_input_data.Rd
3a72296c58d45c5f243c5499318410b1 *man/create_artificial_genomeadmixr_data.Rd
61e337bbfff2ec1ffb4c884d7db87a97 *man/create_iso_female.Rd
6f3dbebff6eeb3fd404e96263e55721a *man/default_params_doc.Rd
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3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
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4731af25681f2657226561b31eab1190 *man/iso_female_sequence.Rd
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38433053c39f9279c190025cb2740299 *man/migration_settings.Rd
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2214cfa4c87d11f2f68db5b2a0f0ea48 *man/plot.individual.Rd
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08014b02cff3b1ae8b74d7bb221af355 *man/plot_difference_frequencies.Rd
db081cf524c50d02f71c7fd8d7968340 *man/plot_dist_junctions.Rd
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cc6e24af687708d16649df07bb697ded *man/plot_joyplot_frequencies.Rd
51988aba2c9ed1af008f2b550afdc2c5 *man/plot_over_time.Rd
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d1a61fb6f6dadedc57c0f42f96a06321 *man/save_population.Rd
d30f553b5099b3a4eb6f4192c469d207 *man/sequence_module.Rd
e63d11504b673281f426c866a901d7ba *man/simulate_admixture.Rd
4ac096dcf9a64a7e26ca76694102827e *man/simulate_ancestry.Rd
9b9adde8e165413d1c200a5220918199 *man/simulate_ancestry_migration.Rd
3a5568a87de0d20b5e49849ece903527 *man/simulate_sequence.Rd
f8128f2d5dbeb404a6a2fb5c462f0590 *man/simulate_sequence_migration.Rd
922a5d22da9eed724874e5d274f34c70 *man/simulation_data_to_genomeadmixr_data.Rd
9d38a71e73d0055f01489727ac4808e3 *man/vcfR_to_genomeadmixr_data.Rd
cc1118bf24bbe6ff31caf271cbcaf331 *man/write_as_plink.Rd
e3c26b9d9b1fa25c7fa18144c50b9971 *src/Fish.cpp
a1b0269a7b4ed082b6da149414f32bda *src/Fish.h
7790ddf5243e1a27d03eea75e4f44638 *src/Fish_emp.h
50e5031030947d935ca759cea5d50042 *src/Makevars
aa8f04852a974dde070ed93a59907e38 *src/Makevars.win
7158e7c4681a4bf0bc00afc7fa38ba78 *src/RcppExports.cpp
38864fef95769f186ae495e893f4d9ac *src/helper_functions.cpp
1ab7d5cac49ac5a56d0ba92a0ce56440 *src/helper_functions.h
53783ca07d4e54195d16412a382109dc *src/random_functions.h
8be882cb700c3b0943d2d4bd6e6f0f50 *src/simulate.cpp
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2ae46e6d0035ef34ebfd0bf6f2740b7a *src/simulate_migration.cpp
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7dd929bc266d5f63de06188b557b22df *src/util.h
120850808feec7e5fe0598b14ecc083f *tests/testthat.R
d17a75b72ea62f4676e76efd21974e0c *tests/testthat/Rplots.pdf
641e749e91c773597dc40f697c201665 *tests/testthat/test-LD.R
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a8b3988634fc417d101f9760b30dff66 *tests/testthat/test-combined_input_data.R
979439a996831af9c8c36d11a1827d4c *tests/testthat/test-fst.R
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d5173004e6972c3f612166b96cde6289 *tests/testthat/test-isoFemales.R
3c17553b693708036fd330286d8c605f *tests/testthat/test-joyplot.R
65f637e920ae414045338037f26784c6 *tests/testthat/test-junctions.R
13594dd2b511e7d77cc699dbacfaa7f1 *tests/testthat/test-plink.R
24e817e35184b77b4dc4ed336f25a8e9 *tests/testthat/test-save_load.R
051847bf6d4a0f5972e5634d8108c8a9 *tests/testthat/test-selection.R
ca7a767014f7b9b019ecb9820f80e409 *tests/testthat/test-simulate_admixture.R
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715beedcdf7f1ce0dee59fa3293e984b *tests/testthat/test-simulate_migration.R
f9e6dd8a6157ee8061530fe73105a7e5 *tests/testthat/test-utilities.R
1f63bfdad33315a45f9663c019bd380b *vignettes/Demonstrate_isofemales.Rmd
d7791029db4865e6bc5876364dc8cf22 *vignettes/Empirical_data.Rmd
ecc729d1e1cbf40ff7a62970fce129f8 *vignettes/Joyplots.Rmd
bed0736630db490340fd059ddd31bfdd *vignettes/Visualization.Rmd
0f37de26e9821d73a08adbeaab97fde6 *vignettes/Walkthrough.Rmd
