% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/deconvo_tme.R
\name{deconvo_estimate}
\alias{deconvo_estimate}
\title{Calculate ESTIMATE Scores}
\usage{
deconvo_estimate(eset, project = NULL, platform = "affymetrix")
}
\arguments{
\item{eset}{Gene expression matrix with gene symbols.}

\item{project}{Optional project name. Default is `NULL`.}

\item{platform}{Platform type: `"affymetrix"` or `"illumina"`.
Default is `"affymetrix"`.}
}
\value{
Data frame with ESTIMATE scores. Columns suffixed with `_estimate`.
}
\description{
Calculates stromal, immune, and ESTIMATE scores from gene expression.
}
\examples{
eset_stad <- load_data("eset_stad")
anno_grch38 <- load_data("anno_grch38")
eset <- anno_eset(eset = eset_stad, annotation = anno_grch38, probe = "id")
\donttest{
estimate_result <- deconvo_estimate(eset, project = "TCGA-STAD")
}
}
\author{
Dongqiang Zeng
}
