% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data_doc.R
\docType{data}
\name{pdata_stad}
\alias{pdata_stad}
\title{Toy STAD Phenotype Data}
\format{
A data frame with one row per TCGA-STAD sample and 8 variables:
\describe{
  \item{ID}{Character. TCGA sample barcode, matching the column names
  of \code{eset_stad}.}
  \item{stage}{Factor. Pathological stage (e.g. \code{"Stage_I"},
  \code{"Stage_II"}, \code{"Stage_III"}, \code{"Stage_IV"}).}
  \item{status}{Factor. Vital status at last follow-up
  (\code{"Alive"} or \code{"Dead"}).}
  \item{Lauren}{Factor. Lauren classification of gastric cancer
  (\code{"Intestinal"}, \code{"Diffuse"}, \code{"Mixed"} or \code{NA}).}
  \item{subtype}{Factor. Molecular subtype (e.g. \code{"CIN"}, \code{"EBV"},
  \code{"GS"}, \code{"MSI"}).}
  \item{EBV}{Factor. EBV status of the tumour (\code{"Positive"} or
  \code{"Negative"}).}
  \item{time}{Numeric. Overall survival or follow-up time, typically
  measured in months.}
  \item{OS_status}{Integer/binary. Overall survival status indicator.
  (\code{1} = death, \code{0} = censored)}
}
}
\usage{
data(pdata_stad)
}
\description{
A data frame containing clinical and pathological annotations for the
TCGA stomach adenocarcinoma (STAD) cohort. Each row corresponds to one
tumour sample and can be matched to the columns of \code{eset_stad} via
the \code{ID} column. This dataset is typically used together with
\code{eset_stad} in examples of survival analysis, subgroup comparison
and immune deconvolution in the IOBR package.
}
\examples{
data(pdata_stad)
head(pdata_stad)
}
\keyword{datasets}
