% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/ImmuneSigR.R
\name{Get_Markers}
\alias{Get_Markers}
\title{Get Marker Genes for Specific Cell Types}
\usage{
Get_Markers(
  cell_type = NULL,
  ignore_case = TRUE,
  fixed = FALSE,
  min_genes = 1,
  gmt_file = NULL
)
}
\arguments{
\item{cell_type}{A character vector specifying cell type keywords. If NULL, returns the entire database.}

\item{ignore_case}{Logical. If TRUE, matching ignores case.}

\item{fixed}{Logical. If TRUE, treats \code{cell_type} as plain text instead of a regular expression.}

\item{min_genes}{Minimum number of genes required for a returned signature.}

\item{gmt_file}{Optional path to a custom GMT file.}
}
\value{
A list containing the marker genes.
}
\description{
Retrieve the marker gene lists for specified immune cell subpopulations.
}
\examples{
# Get all markers
all_markers <- Get_Markers()
# Get specific markers
t_cell_markers <- Get_Markers("T cell")
}
