@article{Otsu.1979,
 author = {Otsu, Nobuyuki},
 year = {1979},
 title = {{A Threshold Selection Method from Gray-Level Histograms}},
 pages = {62--66},
 volume = {9},
 number = {1},
 issn = {2168-2909},
 journal = {{IEEE Transactions on Systems, Man, and Cybernetics}},
 doi = {10.1109/TSMC.1979.4310076},
 file = {Otsu 1979 - A Threshold Selection Method.pdf}
}

@book{Shiny2020,
 author = {Chang, W. and Cheng, J. and Allaire, J. and Xie, Y. and McPherson, J.},
 year = {2020},
 title = {{Web Application Framework for R. R package shiny version 1.5.0.}},
 url = {https://CRAN.R-project.org/package=shiny},
 publisher = {{Comprehensive R Archive Network (CRAN)}}
}

@book{shinyImage,
 abstract = {Standard imaging operations, e.g. crop and contrast adjustment, but with ability to go back and forth through sequence of changes, with records being persistent. Optional Shiny interface. Useful to help with the research reproducibility problem, and as a teaching tool.},
 author = {Fu, A. and Shin, A. and Matlof, N.},
 year = {2017},
 title = {{Image Manipulation, with an Emphasis on Journaling. R package ShinyImage version 0.1.0.}},
 url = {https://CRAN.R-project.org/package=ShinyImage},
 publisher = {{Comprehensive R Archive Network (CRAN)}}
}

@inproceedings{Liu.2009,
 author = {Liu, Dongju and Yu, Jian},
 title = {{Otsu Method and K-means}},
 pages = {344--349},
 publisher = {IEEE},
 isbn = {978-0-7695-3745-0},
 editor = {Pan, Jeng-Shyang},
 booktitle = {{2009 Ninth International Conference on Hybrid Intelligent Systems}},
 year = {2009},
 address = {Piscataway, NJ},
 doi = {10.1109/HIS.2009.74},
 file = {http://ieeexplore.ieee.org/document/5254345/}
}

@article{Li.1993,
 author = {Li, C. H. and Lee, C. K.},
 year = {1993},
 title = {{Minimum cross entropy thresholding}},
 url = {http://www.sciencedirect.com/science/article/pii/003132039390115D},
 pages = {617--625},
 volume = {26},
 number = {4},
 issn = {00313203},
 journal = {{Pattern Recognition}},
 doi = {10.1016/0031-3203(93)90115-D}
}

@article{Li.1998,
 author = {Li, C. H. and Tam, P.K.S.},
 year = {1998},
 title = {{An iterative algorithm for minimum cross entropy thresholding}},
 pages = {771--776},
 volume = {19},
 number = {8},
 issn = {01678655},
 journal = {{Pattern Recognition Letters}},
 doi = {10.1016/S0167-8655(98)00057-9}
}

@article{Zack.1977,
 author = {Zack, G. W. and Rogers, W. E. and Latt, S. A.},
 year = {1977},
 title = {{Automatic measurement of sister chromatid exchange frequency}},
 pages = {741--753},
 volume = {25},
 number = {7},
 issn = {0022-1554},
 journal = {{The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society}},
 doi = {10.1177/25.7.70454},
 file = {http://www.ncbi.nlm.nih.gov/pubmed/70454},
 file = {4272cf1b-52fc-4228-a69f-c6527c4b84cf:C\:\\Users\\Weronika Schary\\AppData\\Local\\Swiss Academic Software\\Citavi 6\\ProjectCache\\j8aglyuzhkrxdpvs4fm5han730sefzmcrez7exbz\\Citavi Attachments\\4272cf1b-52fc-4228-a69f-c6527c4b84cf.pdf:pdf}
}

@misc{R2020,
 author = {{R Core Team}},
 year = {2021},
 title = {{R: A Language and Environment for Statistical Computing}},
 url = {https://www.R-project.org},
 address = {Vienna, Austria}
}

@misc{shinyjs.2020,
 author = {Attali, Dean},
 year = {2020},
 title = {{Shinyjs: Easily Improve the User Experience of Your Shiny Apps in Seconds.}},
 url = {https://CRAN.R-project.org/package=shinyjs},
 urldate = {8/27/2020},
 file = {https://cran.r-project.org/web/packages/shinyjs/index.html}
}

@misc{shinythemes.2018,
 author = {Chang, Winston},
 year = {2018},
 title = {{Shinythemes: Themes for Shiny.}},
 url = {https://CRAN.R-project.org/package=shinythemes},
 urldate = {8/27/2020},
 file = {https://cran.r-project.org/web/packages/shinythemes/index.html}
}

@misc{fs.2020,
 author = {{Hester, Jim, and Hadley Wickham}},
 year = {2020},
 title = {{Fs: Cross-Platform File System Operations Based on 'Libuv'.}},
 url = {https://CRAN.R-project.org/package=fs},
 urldate = {8/27/2020},
 file = {https://cran.r-project.org/web/packages/shinyFiles/index.html}
}

@misc{shinyfiles.2020,
 author = {{Pedersen, Thomas Lin, Vincent Nijs, Thomas Schaffner, and Eric Nantz}},
 year = {2020},
 title = {{ShinyFiles: A Server-Side File System Viewer for Shiny.}},
 url = {https://CRAN.R-project.org/package=shinyFiles},
 urldate = {8/27/2020},
 file = {https://cran.r-project.org/web/packages/fs/index.html}
}

@article{Pau.2010,
 author = {Pau, Gr{\'e}goire and Fuchs, Florian and Sklyar, Oleg and Boutros, Michael and Huber, Wolfgang},
 year = {2010},
 title = {{EBImage--an R package for image processing with applications to cellular phenotypes}},
 keywords = {Computer Graphics;Databases, Factual;Image Processing, Computer-Assisted/methods;Information Storage and Retrieval;Phenotype;Software;User-Computer Interface},
 pages = {979--981},
 volume = {26},
 number = {7},
 issn = {1367-4803},
 journal = {{Bioinformatics (Oxford, England)}},
 doi = {10.1093/bioinformatics/btq046},
 file = {EBImage--an R package for image processing with applicat.pdf}
}

@misc{DT.2020,
 author = {{Xie, Yihui, Joe Cheng, and Xianying Tan}},
 year = {2020},
 title = {{DT: A Wrapper of the Javascript Library 'Datatables'.}},
 url = {https://CRAN.R-project.org/package=DT},
 urldate = {8/27/2020},
 file = {https://cran.r-project.org/web/packages/DT/index.html}
}

@book{rmarkdown,
 abstract = {Convert R Markdown documents into a variety of formats.},
 author = {Allaire, J. and Xie, Y. and McPherson, J. and Luraschi, J. and Ushey, K. and Atkins, A. and Wickham, H. and Cheng, J. and Chang, W. and Iannone, R.},
 year = {2020},
 title = {{R Markdown: Dynamic Documents for R. R package rmarkdown version 2.6.4}},
 url = {https://rmarkdown.rstudio.com},
 publisher = {{Comprehensive R Archive Network (CRAN)}}
}

@book{Wickham.2016,
 author = {Wickham, Hadley},
 year = {2016},
 title = {{ggplot2: Elegant graphics for data analysis}},
 address = {Cham},
 publisher = {Springer},
 isbn = {9783319242774},
 series = {{Use R!}},
 doi = {10.1007/978-3-319-24277-4}
}

@Book{mgcv,
  title = {Generalized Additive Models: An Introduction with R},
  year = {2017},
  author = {S.N Wood},
  edition = {2},
  publisher = {Chapman and Hall/CRC},
}

