@article{lu2012markov,
  title={Markov modulated Poisson process associated with state-dependent marks and its applications to the deep earthquakes},
  author={Lu, Shaochuan},
  journal={Annals of the Institute of Statistical Mathematics},
  volume={64},
  pages={87--106},
  year={2012},
  publisher={Springer}
}

@article{mews2023markov,
  title={Markov-modulated marked Poisson processes for modeling disease dynamics based on medical claims data},
  author={Mews, Sina and Surmann, Bastian and Hasemann, Lena and Elkenkamp, Svenja},
  journal={Statistics in Medicine},
  year={2023},
  publisher={Wiley Online Library}
}

@article{langrock2013markov,
  title={Markov-modulated nonhomogeneous Poisson processes for modeling detections in surveys of marine mammal abundance},
  author={Langrock, Roland and Borchers, David L and Skaug, Hans J},
  journal={Journal of the American Statistical Association},
  volume={108},
  number={503},
  pages={840--851},
  year={2013},
  publisher={Taylor \& Francis}
}

@article{meier1987fitting,
  title={A fitting algorithm for Markov-modulated Poisson processes having two arrival rates},
  author={Meier-Hellstern, Kathleen S},
  journal={European Journal of Operational Research},
  volume={29},
  number={3},
  pages={370--377},
  year={1987},
  publisher={Elsevier}
}

@article{feldmann2023,
  title={Flexible modelling of diel and other periodic variation in hidden {M}arkov models},
  author={Feldmann, Carlina C and Mews, S and Coculla, A and Stanewsky, R and Langrock, R},
  journal={Journal of Statistical Theory and Practice},
  volume={17},
  number={45},
  pages={1--15},
  year={2023}
}

@phdthesis{langrock2011some,
  title={On some special-purpose hidden Markov models},
  author={Langrock, Roland},
  year={2011},
  school={University of Göttingen}
}

@article{langrock2011hidden,
  title={Hidden Markov models with arbitrary state dwell-time distributions},
  author={Langrock, Roland and Zucchini, Walter},
  journal={Computational Statistics \& Data Analysis},
  volume={55},
  number={1},
  pages={715--724},
  year={2011},
  publisher={Elsevier}
}

@book{zucchini,
  title={Hidden {M}arkov {M}odels for {T}ime {S}eries: {A}n {I}ntroduction {U}sing {R}},
  author={Zucchini, Walter and MacDonald, Iain L. and Langrock, Roland},
  year={2016},
  publisher={Boca Raton: Chapman \& Hall/CRC}
}

@book{dobrow2016introduction,
  title={Introduction to stochastic processes with R},
  author={Dobrow, Robert P},
  year={2016},
  publisher={John Wiley \& Sons}
}

@article{glennie2023hidden,
  title={Hidden Markov models: Pitfalls and opportunities in ecology},
  author={Glennie, Richard and Adam, Timo and Leos-Barajas, Vianey and Michelot, Th{\'e}o and Photopoulou, Theoni and McClintock, Brett T},
  journal={Methods in Ecology and Evolution},
  volume={14},
  number={1},
  pages={43--56},
  year={2023},
  publisher={Wiley Online Library}
}

@article{beumer2020application,
  title={An application of upscaled optimal foraging theory using hidden Markov modelling: year-round behavioural variation in a large arctic herbivore},
  author={Beumer, Larissa T and Pohle, Jennifer and Schmidt, Niels M and Chimienti, Marianna and Desforges, Jean-Pierre and Hansen, Lars H and Langrock, Roland and Pedersen, Stine H{\o}jlund and Stelvig, Mikkel and van Beest, Floris M},
  journal={Movement Ecology},
  volume={8},
  pages={1--16},
  year={2020},
  publisher={Springer}
}

@article{pohle2022flexible,
  title={Flexible estimation of the state dwell-time distribution in hidden semi-Markov models},
  author={Pohle, Jennifer and Adam, Timo and Beumer, Larissa T},
  journal={Computational Statistics \& Data Analysis},
  volume={172},
  pages={107479},
  year={2022},
  publisher={Elsevier}
}

@article{mews2024build,
  title={How to build your latent Markov model: {T}he role of time and space},
  author={Mews, Sina and Koslik, Jan-Ole and Langrock, Roland},
  journal={Statistical {M}odelling},
  volume={0},
  number={0},
  doi={10.1177/1471082X251355681},
  publisher={SAGE Publications Sage India: New Delhi, India},
  year={2025}
}

@article{koslik2023inference,
  title={Inference on the state process of periodically inhomogeneous hidden Markov models for animal behavior},
  author={Koslik, Jan-Ole and Feldmann, Carlina C and Mews, Sina and Michels, Rouven and Langrock, Roland},
  journal={The Annals of Applied Statistics},
  volume={19}, 
  number={4},
  year={2025}
}

@book{wood2017generalized,
  title={Generalized additive models: an introduction with R},
  author={Wood, Simon},
  year={2017},
  publisher={chapman and hall/CRC}
}

@article{koslik2024efficient,
      title={Efficient smoothness selection for nonparametric {M}arkov-switching models via quasi restricted maximum likelihood}, 
      author={Jan-Ole Koslik},
      year={2024},
      eprint={2411.11498},
      archivePrefix={arXiv},
      primaryClass={stat.ME},
      url={https://arxiv.org/abs/2411.11498}, 
}

