% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{luad_run_data}
\alias{luad_run_data}
\title{Lung adenocarcinoma from TCGA cohort as SelectSim run object}
\format{
A named list with four elements:
\describe{
\item{M}{A named list containing:
\describe{
\item{M}{A named list of binary alteration matrices (genes x samples),
one per alteration type (e.g., \code{missense}, \code{truncating}).}
\item{tmb}{A named list of data frames, one per alteration type, each
with columns \code{sample} (character) and \code{mutation} (integer
TMB count).}
}
}
\item{sample.class}{Named character vector of sample-type annotations
(length = number of samples). Names are sample IDs.}
\item{alteration.class}{Named character vector of alteration-type annotations
(length = number of genes). Names are gene symbols.}
}
}
\usage{
data(luad_run_data)
}
\value{
A named list containing preprocessed LUAD input data for
\code{selectX()}.
}
\description{
Preprocessed TCGA LUAD data ready to pass directly to \code{selectX()}.
}
\examples{
data(luad_run_data)
names(luad_run_data)
str(luad_run_data, max.level = 1)
}
\keyword{datasets}
