87271afc2690e94ae7e6346cae01e1b4 *DESCRIPTION
757df941727fd3ce594696aceeb9c692 *NAMESPACE
262768be3f620da07a9f3ea919a6802f *NEWS.md
fd3afdf697087fd7e546a09ba799b63f *R/MFItoRAU.R
9d524853e4792ccd0d625327cd5a36b3 *R/SeroTrackR-package.R
d058120850e85ae864d8c00ab0ae2276 *R/classifyResults.R
d5c2f83e9f5574af7299fddcc5bb512a *R/data-documentation.R
8fe2e00bc9230fd8072acb2c032bdef6 *R/getGithubRelease.R
8c2f49023eafcb079a5481877ee0a6e7 *R/getPlateLayout.R
9dcadca0d6d3dd412d4c99601e1c49ff *R/getRepeats.R
977275bfccfa0e64d25f53e63adc98ed *R/globals.R
a8c46344877dabcc34f6c456e7c51bd4 *R/makeCard.R
73de6555ac805044f680ce8e15f73f86 *R/plotBeadCounts.R
17759210e55fccb2e71f62f09998b025 *R/plotBlanks.R
7cebe882a31d8df29efbbe2a210ba313 *R/plotBoxPlotClassification.R
8c7cdf2a5ce7312fc75274fae246be8d *R/plotCounts.R
183e2f80bbed4abdefe184a44b8db1df *R/plotMFI.R
c354fab9c8ca8255ef2cbceb7545d1d9 *R/plotModel.R
4a91da658baddaeed8d1636262081d43 *R/plotRAU.R
d2d05a521a9fd5f18f6f6fe09feba2df *R/plotStds.R
4203bdc8c06475ef31e56fe197b8a0d5 *R/processPkPfPv.R
d21b724771280299ed8994482b33d0bc *R/readPlateLayout.R
faf038e3c27403cbd81060c47f645a63 *R/readSeroData.R
3ff4207d85124734981adc98128dbe09 *R/renderClassificationTable.R
ffcba294d581fe7d924c4025e24473fb *R/renderDetailsList.R
0b3f623e02ca36b047a0d77ed048750c *R/renderQCReport.R
dda0b493e01c2048bad094193d72ef40 *R/renderReport.R
80ac3190fa57409cfe516582c5106c7d *R/renderTwoCols.R
543482521e3b63f4b6001573adb9fe33 *R/runLDHPipeline.R
36b38d3f282acd12b20864d4fcd02817 *R/runPlasmoPipeline.R
7f560e854e065ec1a16358e8827fa7c9 *R/runPvSeroPipeline.R
8857d953f0c9d5a5064b49f01cb0f9d7 *R/runQC.R
8a231d9b89e479c8bc97e6fdf4eb5500 *README.md
53d710063c187b6e76fc71c82e9ec1c4 *build/vignette.rds
d8741b98a0ad33ec1708499673539414 *inst/doc/FAQs.R
be30bb9e606c754eaf4c00a695303c75 *inst/doc/FAQs.Rmd
06b37ac2cb9cfc323a46f371423b8d35 *inst/doc/FAQs.html
ddd1d2299a3431f9676f7f3e22bbe2bf *inst/doc/Pk_Pv_Pf_Serology_Tutorial.R
bbf477414bd2bd5cbc343639477ca2fb *inst/doc/Pk_Pv_Pf_Serology_Tutorial.Rmd
cd91b88c91ee6e4bbd6a09993c3a1e36 *inst/doc/Pk_Pv_Pf_Serology_Tutorial.html
5d1e5c6a0b698a46be7ffb4e15cf7b5c *inst/doc/PvLDH_Tutorial.R
e48c77891ad767751e85a81c5f008483 *inst/doc/PvLDH_Tutorial.Rmd
1712110c782020bedcdb20798a91fbda *inst/doc/PvLDH_Tutorial.html
116baf1aba24a16d1276e555f980af8f *inst/doc/PvSeroApp_R_Tutorial.R
6e3e9baaa4bc1d386d9c2b7db829cb13 *inst/doc/PvSeroApp_R_Tutorial.Rmd
fbcf6907658f32235269a121b7b4fd65 *inst/doc/PvSeroApp_R_Tutorial.html
b0ac53e9590d4cdeb310a3e0e9e1fad9 *inst/doc/setup.Rmd
2c0abfab3fedbf9ec952c6d2383f185f *inst/doc/setup.html
8808d892f056d16cb21d6f27adab09b8 *inst/extdata/PkPfPv_Panel_1.csv
98aea93595c9fdc3fdca0f371e188c6c *inst/extdata/all_stds_MFI.csv
09b2b5b83ac4673fd1b65f33a327830b *inst/extdata/example_BioPlex_PvLDH_plate1.xlsx
e1deb7114db307a2b6aec4bc0dea9475 *inst/extdata/example_BioPlex_plate1.xlsx
edf551c9bd14030a88586ddc45d7a4fd *inst/extdata/example_BioPlex_plate2.xlsx
97013d47f45a7243f0a6c38c5582d47c *inst/extdata/example_BioPlex_plate3.xlsx
06e3236aac3faec9d3811f20f7e35af3 *inst/extdata/example_MAGPIX_pk_10std_plate1.csv
5c60883565d32dbbf8ae8cd3de1dd6b1 *inst/extdata/example_MAGPIX_pk_10std_plate2.csv
b18d26d257b7c266010a683831bb634e *inst/extdata/example_MAGPIX_pk_5std_plate1.csv
dc304b95efb12b5b406585f30fdcc189 *inst/extdata/example_MAGPIX_pk_5std_plate2.csv
7c80794020a1eadf5c8e9c959f475c6a *inst/extdata/example_MAGPIX_plate1.csv
8d738425db9cbf899f741579f5eb0e43 *inst/extdata/example_MAGPIX_plate2.csv
79be08c699c63637e3aa79f9f546c4a4 *inst/extdata/example_MAGPIX_plate3.csv
b5b09a8ec272e34ed5b9356ff1107941 *inst/extdata/example_platelayout_1.xlsx
9ce05f6dbcd2f56bb6474096256c23f4 *inst/extdata/example_platelayout_pk_10std.xlsx
96009d728597abf8a1078dc36b0f8836 *inst/extdata/example_platelayout_pk_5std.xlsx
fb6fe1aa9bf13ee144a8db0d0689c72b *inst/extdata/longitudinal_MFI.csv
377d59727291b4451c90bcd5d5d08e29 *inst/extdata/longitudinal_RAU.csv
be7928792f8280403836758435775684 *inst/extdata/platemap.csv
e2f99fee5eda2131e9ea7b4cdbaf51e2 *inst/extdata/png_eth_stds.csv
56b208fdef254233e6298b41a7cf23bd *inst/extdata/threshold_values.csv
f2f6e810958e926d86813f08094debbe *inst/rmd/experiment1_20260408_ETH_v1.5.1_QCreport.log
ffba49ee59acf94d755c8b614da9a1d7 *inst/rmd/template.Rmd
e0729181daae4a45e84e430221c654b6 *man/MFItoRAU.Rd
576ef05830c548a1a937611d5d1268cd *man/MFItoRAU_Adj.Rd
44f1d4bade21ff6c9a00de8bcc8a4285 *man/MFItoRAU_LDH.Rd
922902c17ddfe28d8f94a1b199c80215 *man/MFItoRAU_Pk.Rd
2c41cf51b0ad8d377133cb64ce4de58e *man/MFItoRAU_Plasmo.Rd
58f7d09e4387cfc50ef4c03a3d595a7a *man/SeroTrackR-package.Rd
ba266a69e1bf3c76ab14e511ba3d67a5 *man/classifyResults.Rd
a033b3dda7d1c7e9d6e70807aac27a78 *man/dot-check_platform.Rd
05be9226959feed5fde35c48cec7382a *man/dot-clean_bioplex.Rd
588029542eecb7574c17e345ec510a49 *man/dot-clean_luminex.Rd
a7c077a17db62e9644c3b9d9a8686d10 *man/dot-convert_dilution_to_mfi.Rd
40fe8edf2455b1ef4426124d8e0b1257 *man/dot-convert_mfi_to_dilution.Rd
ed0cb24413fcff666fd530f9501a8b57 *man/dot-convert_mfi_to_dilution_no_bounds.Rd
03aab86ee7132866f402739cf4ea0dcb *man/dot-convert_mfi_to_dilution_no_lower_bound.Rd
302fd5c7af87fcde5ab784defee6a429 *man/dot-extract_luminex_sections.Rd
5d636484aee427ec3a9e135848b54432 *man/dot-fit_standard_curve.Rd
6dc445c5f5f2faa6ce129ab97b01c7ca *man/dot-magpix_version_config.Rd
326762ead0a7230625a73d6c415c7a8c *man/dot-merge_mfitorau.Rd
728e47799c354e073af3e7ca39d036fb *man/dot-post_process_bioplex.Rd
45dc749946c03a338d53c094b92142ca *man/dot-post_process_luminex.Rd
ee6a1d314165cf7e0f6f24f9aab060a3 *man/dot-process_antigen_loglog.Rd
243ebf82c90da5a4a4baa2eef3ebc73c *man/dot-read_luminex_file.Rd
d60dc910c28b6efe4f558a3021c45e29 *man/dot-relabel_columns.Rd
40358a5abb462466e06e97777e820f42 *man/dot-setup_mfitorau_inputs.Rd
b5d4977ed0e671c1ecd52a9ffae9b39a *man/example_BioPlex_PvLDH_plate1_xlsx.Rd
a8562760fc213b5fe7b60ff25c85f39f *man/example_BioPlex_plate1_xlsx.Rd
9c45ecde81b4878945ae7b7f832aee4f *man/example_BioPlex_plate2_xlsx.Rd
8bd159fbf011d9163d304effb7cb57e5 *man/example_BioPlex_plate3_xlsx.Rd
ec543589c4659d0f3338426173915ea3 *man/example_MAGPIX_pk_10std_plate1_csv.Rd
241bb2d90a09e7874932a035d18bf10d *man/example_MAGPIX_pk_10std_plate2_csv.Rd
4480e522001b9f383fc06bf7a2b68048 *man/example_MAGPIX_pk_5std_plate1_csv.Rd
ebe34e69c8897c8bda4d1c7893af3388 *man/example_MAGPIX_pk_5std_plate2_csv.Rd
abaa82a83ac9e5f5f6343a5f8fcb769d *man/example_MAGPIX_plate1_csv.Rd
3591d846bea19081ab0fafae9d880584 *man/example_MAGPIX_plate2_csv.Rd
922d5f7038911a4a7723ac3bfee16c49 *man/example_MAGPIX_plate3_csv.Rd
00dc61e19874292b599cc1c4d47aab24 *man/example_platelayout_1_xlsx.Rd
37a22f2adb720fa5b38bc00e20c5d036 *man/example_platelayout_pk_10std_xlsx.Rd
1c3089a8f2e9ce4040e38598abe8e9d5 *man/example_platelayout_pk_5std_xlsx.Rd
b2656eb86cbe5043beda30467aca76d1 *man/figures/SeroTrackR_Pk_Pf_Pv.jpg
d16c8cd59f9f9918161ea611d905cb56 *man/figures/SeroTrackR_PvSeroApp.jpg
98779ae63f5410dd81efd843c4f7f559 *man/figures/SeroTrackR_sticker.jpg
c7efb29cc4eea9f758ad7a983d57817c *man/figures/bioplex_raw.jpg
82f6ff82b22b07a7f0fada0ea37f85d4 *man/figures/logo.jpg
7323f18d70142100513a80fe82c8335d *man/figures/magpix_raw.jpg
218dcb70361c474c1c6342da4ab80f3a *man/figures/plate_layout_1.jpg
bd9d76496e6215f34a5c8a337ce9f6e8 *man/getAntigenCounts.Rd
9374f084135703ad63ad9dc549308d66 *man/getCounts.Rd
2dbacaa449f9f04498befe6ecee9db8b *man/getCountsQC.Rd
03a0d4bc746fc5086317ce739858f398 *man/getGithubRelease.Rd
4f6f5bb7848ad75e452e2cf0a94e07b1 *man/getPlateLayout.Rd
b98d4dea7cf2bbf2c8559095b66b532e *man/getRepeats.Rd
29e8a648aa22b10dd961287c1065b657 *man/getSampleID.Rd
7c924baa073396eee4108429b38c1d34 *man/makeCard.Rd
00e0271c17eb9bdc83900b6790d97754 *man/plotBeadCounts.Rd
e670820cdc2a989840cef2724458420e *man/plotBlanks.Rd
e4ae563a52a3f3aa056c66eecdd88d68 *man/plotBoxPlotClassification.Rd
22094f38291dd6d0f4c43112cea92ae5 *man/plotCounts.Rd
fb6acb8381962f7dfce0ed7ab7952535 *man/plotMFI.Rd
bbe802c209d46315419dddcca18dd001 *man/plotModel.Rd
2c0a2b5b8ba7445fee82069b3a858c23 *man/plotModel_Adj.Rd
b1569c9106aeee0857c32a3611a8a576 *man/plotRAU.Rd
f2eb237b33a629126efc5946f4666a78 *man/plotStds.Rd
d1524fe5cfeddb9ca2f3725b3a508ad8 *man/plotStds_PkPfPv.Rd
e4a5f41c96dc16c15f223917cc5f5c9b *man/plotStds_all.Rd
a4161f46657cb8a37ce541e4b8291321 *man/processCounts.Rd
4309df9d8b44a9a95410dfa8c1ff0aea *man/processPkPfPv.Rd
6f04660ea1ee724e0ae0b9b8f4a319e0 *man/readPlateLayout.Rd
ed77b2e40c029e9efde032a83bda072c *man/readSeroData.Rd
76f68e7734ac5fcfff49b3d2f73632a5 *man/renderClassificationTable.Rd
11d6c549e574002022bd6fcf1502a540 *man/renderDetailsList.Rd
54aeb0041364f9cde288cff2c8937cc7 *man/renderQCReport.Rd
f999cbf7857ad5fcb5b2b56df9adac05 *man/renderReport.Rd
f5bf4f743cc6888df628bb41ece9f5f5 *man/renderTwoCols.Rd
76db7f6da744dd2204cd8fd113ec3353 *man/runLDHPipeline.Rd
7c6cd59e5897e27829d1e49213b697a2 *man/runPlasmoPipeline.Rd
5a7eab5a2b2c7521503dd8440e7d7644 *man/runPvSeroPipeline.Rd
0d291965f37cc03b97762b1ed8e18dd7 *man/runQC.Rd
be30bb9e606c754eaf4c00a695303c75 *vignettes/FAQs.Rmd
bbf477414bd2bd5cbc343639477ca2fb *vignettes/Pk_Pv_Pf_Serology_Tutorial.Rmd
e48c77891ad767751e85a81c5f008483 *vignettes/PvLDH_Tutorial.Rmd
6e3e9baaa4bc1d386d9c2b7db829cb13 *vignettes/PvSeroApp_R_Tutorial.Rmd
b0ac53e9590d4cdeb310a3e0e9e1fad9 *vignettes/setup.Rmd
