% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plotting_and_reporting_functions.R
\name{plot_volcano_deg}
\alias{plot_volcano_deg}
\title{Generate volcano plots for categorized DEGs}
\usage{
plot_volcano_deg(de_results, top_n = 5, logfc_thresh = 1.5, ncol = 2)
}
\arguments{
\item{de_results}{A data.frame or named list of data.frames containing categorized DEGs.
Required columns: DEG_Type, Gene_Symbols, Male_avg_logFC, Male_FDR,
Female_avg_logFC, Female_FDR}

\item{top_n}{Number of top genes to highlight per sex (default = 5).}

\item{logfc_thresh}{Minimum absolute logFC to consider a gene for highlighting (default = 1.5).}

\item{ncol}{Number of columns for arranging plots (default = 2).}
}
\value{
Named list of combined volcano plots per cell type or "all" for bulk.
}
\description{
Creates volcano plots for all DEG categories (male-specific, female-specific,
sex-dimorphic, sex-neutral). Accepts either a single data.frame (bulk) or a
list of data.frames per cell type.
}
