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@Manual{R,
  Title                    = {\proglang{R}: {A} Language and Environment for Statistical Computing},

  Address                  = {Vienna, Austria},
  Author                   = {{\proglang{R} Core Team}},
  Organization             = {\proglang{R} Foundation for Statistical Computing},
  Year                     = {2017},

  Url                      = {https://www.R-project.org/}
}

@Article{Eddelbuettel2013,
  Title                    = {{RcppArmadillo}: Accelerating {R} with high-performance {C++} linear algebra},
  Author                   = {Dirk Eddelbuettel and Conrad Sanderson},
  Journal                  = {Comput. Stat. Data Anal.},
  Year                     = {2014},
  Pages                    = {1054--63},
  Volume                   = {71},

  Doi                      = {10.1016/j.csda.2013.02.005},
  Owner                    = {mooresm},
  Timestamp                = {2013.07.31}
}

@InProceedings{Friel2012,
  Title                    = {Bayesian inference for {G}ibbs random fields using composite likelihoods},
  Author                   = {Friel, Nial},
  Booktitle                = {Proc. Winter Simulation Conference},
  Year                     = {2012},
  Editor                   = {C. Laroque and J. Himmelspach and R. Pasupathy and O. Rose and A. M. Uhrmacher},
  Month                    = {Dec},
  Pages                    = {1--8},

  Doi                      = {10.1109/WSC.2012.6465236},
  Owner                    = {stsrjs},
  Timestamp                = {2018.02.16}
}

@Article{Friel2004,
  Title                    = {Likelihood Estimation and Inference for the Autologistic Model},
  Author                   = {Friel, Nial and Pettitt, Anthony N.},
  Journal                  = {J. Comp. Graph. Stat.},
  Year                     = {2004},
  Number                   = {1},
  Pages                    = {232--246},
  Volume                   = {13},

  Doi                      = {10.1198/1061860043029},
  Owner                    = {MMoores},
  Timestamp                = {2014.11.14}
}

@Article{Friel2009,
  Title                    = {Bayesian Inference in Hidden {M}arkov Random Fields for Binary Data Defined on Large Lattices},
  Author                   = {Friel, N. and Pettitt, A. N. and Reeves, R. and Wit, E.},
  Journal                  = {J. Comp. Graph. Stat.},
  Year                     = {2009},
  Number                   = {2},
  Pages                    = {243--261},
  Volume                   = {18},

  Doi                      = {10.1198/jcgs.2009.06148},
  Owner                    = {Matt},
  Timestamp                = {2013.05.24}
}

@Article{Garthwaite2010,
  Title                    = {Adaptive optimal scaling of {M}etropolis-{H}astings algorithms using the {R}obbins-{M}onro process},
  Author                   = {P. H. Garthwaite and Y. Fan and S. A. Sisson},
  Journal                  = {Commun. Stat. Theory},
  Year                     = {2016},

  Doi                      = {10.1080/03610926.2014.936562},
  Owner                    = {stsrjs},
  Timestamp                = {2016.03.02}
}

@Article{Gelman1998,
  Title                    = {Simulating normalizing constants: from importance sampling to bridge sampling to path sampling},
  Author                   = {Andrew Gelman and Xiao-Li Meng},
  Journal                  = {Statist. Sci.},
  Year                     = {1998},
  Number                   = {2},
  Pages                    = {163--185},
  Volume                   = {13},

  Doi                      = {10.1214/ss/1028905934},
  Owner                    = {Matt},
  Quality                  = {1},
  Timestamp                = {2013.05.23}
}

@Article{Geman1984,
  Title                    = {Stochastic relaxation, {Gibbs} distributions and the {Bayesian} restoration of images},
  Author                   = {Geman, Stuart and Geman, Donald},
  Journal                  = {IEEE Trans. PAMI},
  Year                     = {1984},
  Pages                    = {721--41},
  Volume                   = {6},

  Owner                    = {mooresm},
  Timestamp                = {2013.12.16}
}

@Article{Grelaud2009,
  Title                    = {{ABC} likelihood-free methods for model choice in {G}ibbs random fields},
  Author                   = {Aude Grelaud and Christian P. Robert and Jean-Michel Marin and Fran{\c c}ois Rodolphe and Jean-Fran{\c c}ois Taly},
  Journal                  = {Bayesian Analysis},
  Year                     = {2009},
  Number                   = {2},
  Pages                    = {317--336},
  Volume                   = {4},

  Doi                      = {10.1214/09-BA412},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.23}
}

@Article{Moeller2006,
  Title                    = {An Efficient {M}arkov Chain {M}onte {C}arlo Method for Distributions with Intractable Normalising Constants},
  Author                   = {M{\o}ller, J. and Pettitt, A. N. and Reeves, R. and Berthelsen, K. K.},
  Journal                  = {Biometrika},
  Year                     = {2006},
  Number                   = {2},
  Pages                    = {451--458},
  Volume                   = {93},

  Doi                      = {10.1093/biomet/93.2.451},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.23}
}

@Article{McGrory2012,
  Title                    = {Variational {B}ayes and the Reduced Dependence Approximation for the Autologistic Model on an Irregular Grid With Applications},
  Author                   = {McGrory, Clare A. and Pettitt, Anthony N. and Reeves, Robert and Griffin, Mark and Dwyer, Mark},
  Journal                  = {J. Comput. Graph. Stat.},
  Year                     = {2012},
  Number                   = {3},
  Pages                    = {781-796},
  Volume                   = {21},

  Doi                      = {10.1080/10618600.2012.632232},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.23}
}

@Article{McGrory2009,
  Title                    = {Variational {B}ayes for estimating the parameters of a hidden {P}otts model},
  Author                   = {McGrory, Clare A. and Titterington, D.M. and Reeves, Robert and Pettitt, Anthony N.},
  Journal                  = {Stat. Comput.},
  Year                     = {2009},
  Number                   = {3},
  Pages                    = {329--340},
  Volume                   = {19},

  Doi                      = {10.1007/s11222-008-9095-6},
  Issue                    = {3},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.23}
}

@Article{MHHM,
  Title                    = {An external field prior for the hidden {P}otts model with application to cone-beam computed tomography},
  Author                   = {M. T. Moores and C. Hargrave and T. Deegan and M. Poulsen and F. Harden and K. Mengersen},
  Journal                  = {Comput. Stat. Data Anal.},
  Year                     = {2015},
  Pages                    = {27--41},
  Volume                   = {86},

  Doi                      = {10.1016/j.csda.2014.12.001},
  Owner                    = {mooresm},
  Timestamp                = {2013.11.12}
}

@InProceedings{Murray2006,
  Title                    = {{MCMC} for Doubly-intractable Distributions},
  Author                   = {Iain Murray and Zoubin Ghahramani and David J. C. MacKay},
  Booktitle                = {Proc. $22^{nd}$ Conf. UAI},
  Year                     = {2006},

  Address                  = {Arlington, VA},
  Pages                    = {359--366},
  Publisher                = {AUAI Press},

  Owner                    = {stsrjs},
  Timestamp                = {2018.02.16}
}

@Article{Ogden2017,
  Title                    = {On asymptotic validity of naive inference with an approximate likelihood},
  Author                   = {Ogden, Helen E.},
  Journal                  = {Biometrika},
  Year                     = {2017},
  Number                   = {1},
  Pages                    = {153-164},
  Volume                   = {104},

  Doi                      = {10.1093/biomet/asx002},
  Owner                    = {stsrjs},
  Timestamp                = {2018.02.16}
}

@Article{Okabayashi2011,
  Title                    = {Extending pseudo-likelihood for {P}otts models},
  Author                   = {Saisuke Okabayashi and Leif Johnson and Charles J. Geyer},
  Journal                  = {Statistica Sinica},
  Year                     = {2011},
  Pages                    = {331--347},
  Volume                   = {21},

  Owner                    = {MMoores},
  Timestamp                = {2014.11.14}
}

@Article{Pettitt2003,
  Title                    = {Efficient calculation of the normalizing constant of the autologistic and related models on the cylinder and lattice},
  Author                   = {Pettitt, Anthony N. and Friel, Nial and Reeves, Robert},
  Journal                  = {J. R. Stat. Soc. Ser. B},
  Year                     = {2003},
  Number                   = {1},
  Pages                    = {235--246},
  Volume                   = {65},

  Doi                      = {10.1111/1467-9868.00383},
  Owner                    = {stsrjs},
  Timestamp                = {2018.02.16}
}

@Article{Potts1952,
  Title                    = {Some generalized order-disorder transformations},
  Author                   = {Potts, Renfrey B.},
  Journal                  = {Proc. Camb. Philos. Soc.},
  Year                     = {1952},
  Pages                    = {106--9},
  Volume                   = {48},

  Doi                      = {10.1017/S0305004100027419},
  Issue                    = {1},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.23}
}

@Article{Reeves2004,
  Title                    = {Efficient Recursions for General Factorisable Models},
  Author                   = {Reeves, R. and Pettitt, A. N.},
  Journal                  = {Biometrika},
  Year                     = {2004},
  Number                   = {3},
  Pages                    = {751--757},
  Volume                   = {91},

  Doi                      = {10.1093/biomet/91.3.751},
  Owner                    = {stsrjs},
  Timestamp                = {2018.02.16}
}

@Article{Ryden1998,
  Title                    = {Computational {B}ayesian Analysis of Hidden {M}arkov Models},
  Author                   = {Ryd{\'e}n, Tobias and Titterington, D. M.},
  Journal                  = {J. Comput. Graph. Stat.},
  Year                     = {1998},
  Number                   = {2},
  Pages                    = {194--211},
  Volume                   = {7},

  Doi                      = {10.1080/10618600.1998.10474770},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.23}
}

@Article{Swendsen1987,
  Title                    = {Nonuniversal critical dynamics in {Monte Carlo} simulations},
  Author                   = {Swendsen, Robert H. and Wang, Jian-Sheng},
  Journal                  = {Phys. Rev. Lett.},
  Year                     = {1987},
  Pages                    = {86--88},
  Volume                   = {58},

  Doi                      = {10.1103/PhysRevLett.58.86},
  Issue                    = {2},
  Owner                    = {mooresm},
  Timestamp                = {2013.05.27}
}

@Article{Varin2011,
  Title                    = {An overview of composite likelihood methods},
  Author                   = {Cristiano Varin and Nancy Reid and David Firth},
  Journal                  = {Statistica Sinica},
  Year                     = {2011},
  Pages                    = {5--42},
  Volume                   = {21},

  Owner                    = {stsrjs},
  Timestamp                = {2014.11.10}
}

