Package: clusteredMSM
Type: Package
Title: Nonparametric Analysis of Clustered Multistate Processes
Version: 0.1.0
Authors@R: 
    person(given = "Giorgos",
           family = "Bakoyannis",
           role = c("aut", "cre"),
           email = "gbakogia@iu.edu",
           comment = c(ORCID = "0000-0002-2789-2497"))
Description: Nonparametric estimation of population-averaged transition
    probabilities, with cluster-bootstrap pointwise confidence intervals,
    simultaneous confidence bands, and two-sample Kolmogorov-Smirnov-type
    tests for clustered or independent multistate process data.
    Estimation follows Bakoyannis (2021) <doi:10.1111/biom.13327>;
    two-sample inference for the cluster-randomized and
    independent-samples designs follows Bakoyannis and Bandyopadhyay
    (2022) <doi:10.1007/s10463-021-00819-x>. Both methods use the
    working-independence Aalen-Johansen estimator. The package supports
    both progressive (acyclic) and non-monotone (e.g., illness-death
    with recovery) multistate processes, right censoring, left
    truncation, and informative cluster size. The user supplies data
    in interval format (one row per mutually-exclusive time interval
    per subject) and interacts with the package through a single
    formula-based function, patp().
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: survival, stats, utils
Suggests: mstate, testthat (>= 3.0.0), knitr, rmarkdown
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/gbakoyannis/clusteredMSM
BugReports: https://github.com/gbakoyannis/clusteredMSM/issues
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-05-20 02:07:01 UTC; giorgos
Author: Giorgos Bakoyannis [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2789-2497>)
Maintainer: Giorgos Bakoyannis <gbakogia@iu.edu>
Repository: CRAN
Date/Publication: 2026-05-27 19:20:08 UTC
