Package: diagFDR
Title: Verifiable FDR Diagnostics for Proteomics
Version: 0.1.1
Authors@R: c(person("Quentin", "Giai Gianetto", email = "quentin.giaigianetto@pasteur.fr", role = c("aut", "cre")))
Description: Provides methods to compute verifiable false discovery rate (FDR) diagnostic checks for workflows based on target-decoy competition and related confidence measures. Implements calibration, stability and tail diagnostics, including tail support, threshold elasticity, posterior error probability (PEP) reliability, and equal-chance checks. If you used this package in your research, please cite the associated preprint <doi:10.64898/2026.04.16.718468>. Detailed examples of using this package can also be found on the GitHub repository (<https://github.com/Jacky11/diagFDR>).
URL: https://www.biorxiv.org/content/10.64898/2026.04.16.718468
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.2.0)
Imports: dplyr, tibble, ggplot2, purrr, rlang, readr, xml2, cp4p,
        tidyr, scales, data.table
Suggests: arrow, knitr, officer, rvg, testthat (>= 3.0.0), withr,
        rmarkdown, jsonlite
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-04-27 12:05:13 UTC; qgiaigia
Author: Quentin Giai Gianetto [aut, cre]
Maintainer: Quentin Giai Gianetto <quentin.giaigianetto@pasteur.fr>
Repository: CRAN
Date/Publication: 2026-04-27 18:30:08 UTC
