% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plot.ngme.R
\name{get_trace_trajectories}
\alias{get_trace_trajectories}
\title{Get trace trajectories from ngme fitting}
\usage{
get_trace_trajectories(ngme, name = "general", apply_transform = TRUE)
}
\arguments{
\item{ngme}{ngme object}

\item{name}{name of latent models, otherwise get fixed effects and measurement noise
should be in names(ngme$models) or other}

\item{apply_transform}{logical, whether to apply parameter transformations (default: TRUE)}
}
\value{
list containing:
\describe{
  \item{trajectories}{named list of trajectory matrices for each parameter}
  \item{parameter_names}{character vector of parameter names}
  \item{transformations}{list of transformation functions used}
  \item{n_chains}{number of chains}
  \item{n_iterations}{number of iterations}
}
}
\description{
Extract numerical trajectories of parameters during ngme optimization
without creating plots. This function provides the underlying data
used by traceplot().
}
