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@article{VanEeuwijk2009,
author = {{Van Eeuwijk}, Fred A. and Boer, Martin and Totir, L. Radu and Bink, Marco and Wright, Deanne and Winkler, Christopher R. and Podlich, Dean and Boldman, Keith and Baumgarten, Andy and Smalley, Matt and Arbelbide, Martin and ter Braak, Cajo J. F. and Cooper, Mark},
doi = {10.1007/S00122-009-1205-0},
issn = {1432-2242},
journal = {Theor. Appl. Genet. 2009 1202},
keywords = {Agriculture,Biochemistry,Biotechnology,Plant Biochemistry,Plant Breeding/Biotechnology,Plant Genetics and Genomics,general},
month = {nov},
number = {2},
pages = {429--440},
publisher = {Springer},
title = {{Mixed model approaches for the identification of QTLs within a maize hybrid breeding program}},
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author = {Lander, Eric S. and Green, Philip},
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@article{Zheng2019,
author = {Zheng, Chaozhi and Boer, Martin P and {Van Eeuwijk}, Fred A},
doi = {10.1534/GENETICS.119.302229},
journal = {Genetics},
keywords = {Cross-pollinated (CP),Genetic map construction,Hidden Markov model (HMM),MPP,Multiparent advanced generation intercross (MAGIC),Multiparental populations,Nested association mapping (NAM)},
month = {aug},
number = {4},
pages = {1031--1044},
publisher = {Oxford Academic},
title = {{Construction of Genetic Linkage Maps in Multiparental Populations}},
url = {https://academic.oup.com/genetics/article/212/4/1031/5931406},
volume = {212},
year = {2019}
}

@article{Zheng2014,
	title = {A General Modeling Framework for Genome Ancestral Origins in Multiparental Populations},
  author = {Zheng, Chaozhi and Boer, Martin P and {Van Eeuwijk}, Fred A},
	year = {2014},
	month = {09},
	date = {2014-09-01},
	journal = {Genetics},
	pages = {87--101},
	volume = {198},
	number = {1},
	doi = {10.1534/genetics.114.163006},
	url = {http://dx.doi.org/10.1534/genetics.114.163006},
	langid = {en}
}


@article{Zheng2018,
author = {Zheng, Chaozhi and Boer, Martin P and {Van Eeuwijk}, Fred A},
doi = {10.1534/G3.118.200340},
file = {:C$\backslash$:/Users/boer032/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Zheng, Boer, Van Eeuwijk - 2018 - Recursive Algorithms for Modeling Genomic Ancestral Origins in a Fixed Pedigree.pdf:pdf},
journal = {G3 Genes|Genomes|Genetics},
keywords = {Ancestral inference,Collaborative cross (CC),Identical by descent,Junction theory,Multiparent advanced generation intercross (MAGIC),Multiparental populations mpp,QTL mapping,Recombinant inbred line (RIL),Resolution},
month = {oct},
number = {10},
pages = {3231--3245},
publisher = {Oxford Academic},
title = {{Recursive Algorithms for Modeling Genomic Ancestral Origins in a Fixed Pedigree}},
url = {https://academic.oup.com/g3journal/article/8/10/3231/6027011},
volume = {8},
year = {2018}
}

@article{Zheng2015,
author = {Zheng, Chaozhi and Boer, Martin P and {Van Eeuwijk}, Fred A},
doi = {10.1534/GENETICS.115.177873},
journal = {Genetics},
keywords = {Collaborative cross (CC),Diversity outcross (DO),Haplotype reconstruction,Hidden Markov model,MPP,Multiparent advanced generation inter-cross (MAGIC),Multiparental populations},
month = {aug},
number = {4},
pages = {1073--1087},
publisher = {Oxford Academic},
title = {{Reconstruction of Genome Ancestry Blocks in Multiparental Populations}},
url = {https://academic.oup.com/genetics/article/200/4/1073/5936150},
volume = {200},
year = {2015}
}

@article{Huang2011,
author = {Huang, Xueqing and Paulo, Maria-Jo{\~{a}}o and Boer, Martin and Effgen, Sigi and Keizer, Paul and Koornneef, Maarten and {Van Eeuwijk}, Fred A},
doi = {10.1073/pnas.1100465108},
title = {{Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population}},
url = {www.pnas.org/cgi/doi/10.1073/pnas.1100465108},
year = {2011}
}

@article{Liller2017-jz,
  title     = "Fine mapping of a major {QTL} for awn length in barley using a
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  author    = "Liller, Corinna B and Walla, Agatha and Boer, Martin P and
               Hedley, Pete and Macaulay, Malcolm and Effgen, Sieglinde and von
               Korff, Maria and van Esse, G Wilma and Koornneef, Maarten",
  journal   = "Z{\"u}chter Genet. Breed. Res.",
  publisher = "Springer Science and Business Media LLC",
  volume    =  130,
  number    =  2,
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  month     =  feb,
  year      =  2017,
  language  = "en",
  doi = {10.1007/s00122-016-2807-y},
}

@article{Giraud2014,
  title     = "Linkage disequilibrium with linkage analysis of multiline
               crosses reveals different multiallelic {QTL} for hybrid
               performance in the flint and dent heterotic groups of maize",
  author    = "Giraud, H{\'e}lo{\"\i}se and Lehermeier, Christina and Bauer,
               Eva and Falque, Matthieu and Segura, Vincent and Bauland, Cyril
               and Camisan, Christian and Campo, Laura and Meyer, Nina and
               Ranc, Nicolas and Schipprack, Wolfgang and Flament, Pascal and
               Melchinger, Albrecht E and Menz, Monica and Moreno-Gonz{\'a}lez,
               Jes{\'u}s and Ouzunova, Milena and Charcosset, Alain and
               Sch{\"o}n, Chris-Carolin and Moreau, Laurence",
  journal   = "Genetics",
  publisher = "Oxford University Press (OUP)",
  volume    =  198,
  number    =  4,
  pages     = "1717--1734",
  month     =  dec,
  year      =  2014,
  keywords  = "MPP; Multiparent Advanced Generation Inter-Cross (MAGIC); QTL
               detection; allelic series; linkage disequilibrium information
               with linkage analysis (LDLA); maize biomass production;
               multiparental families; multiparental populations",
  copyright = "https://academic.oup.com/journals/pages/open\_access/funder\_policies/chorus/standard\_publication\_model",
  language  = "en",
  doi = {10.1534/genetics.114.169367}
  }

@article{Li2021,
author = {Li, Wenhao and Boer, Martin P. and Zheng, Chaozhi and Joosen, Ronny V. L. and {Van Eeuwijk}, Fred A.},
doi = {10.1007/S00122-021-03919-7},
issn = {1432-2242},
journal = {Theor. Appl. Genet. 2021},
keywords = {Agriculture,Biochemistry,Biotechnology,Plant Biochemistry,Plant Breeding/Biotechnology,Plant Genetics and Genomics,general},
month = {aug},
pages = {1--18},
publisher = {Springer},
title = {{An IBD-based mixed model approach for QTL mapping in multiparental populations}},
url = {https://link.springer.com/article/10.1007/s00122-021-03919-7},
volume = {1},
year = {2021}
}

@article{Li2022,
  title={statgenMPP: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations},
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  journal={Bioinformatics},
  volume={38},
  number={22},
  pages={5134--5136},
  year={2022},
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}

@article{boer2023,
  title={Tensor product {P}-splines using a sparse mixed model formulation},
  author={Boer, Martin P.},
  journal={Statistical Modelling},
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  publisher={SAGE Publications Sage India: New Delhi, India}
}

@article{Zheng2014,
  title     = "A general modeling framework for genome ancestral origins in
               multiparental populations",
  author    = "Zheng, Chaozhi and Boer, Martin P and {Van Eeuwijk}, Fred A",
  journal   = "Genetics",
  publisher = "Oxford University Press (OUP)",
  volume    =  198,
  number    =  1,
  pages     = "87--101",
  month     =  sep,
  year      =  2014,
  keywords  = "Arabidopsis multiparent recombinant inbred lines (AMPRIL);
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               Inter-Cross (MAGIC); Multiparental populations; identity by
               descent (IBD); multiparent advanced generation intercross
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  copyright = "https://academic.oup.com/journals/pages/open\_access/funder\_policies/chorus/standard\_publication\_model",
  language  = "en",
  doi = {10.1534/genetics.114.163006}
}

@article{Zheng2015,
  title     = "Reconstruction of genome ancestry blocks in multiparental
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  author    = "Zheng, Chaozhi and Boer, Martin P and {Van Eeuwijk}, Fred A",
  journal   = "Genetics",
  publisher = "Oxford University Press (OUP)",
  volume    =  200,
  number    =  4,
  pages     = "1073--1087",
  month     =  aug,
  year      =  2015,
  keywords  = "Collaborative Cross (CC); Multiparent Advanced Generation
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  copyright = "https://academic.oup.com/journals/pages/open\_access/funder\_policies/chorus/standard\_publication\_model",
  language  = "en",
  doi = {10.1534/genetics.115.177873}
}












