#' cod
#'
#' Example TCGA expression matrix used in grouping and plotting demos.
#'
#' @examples
#'   cod
"cod"

#' deg
#'
#' Example limma differential analysis result for GSE42872.
#'
#' @examples
#'   head(deg)
"deg"

#' deseq_data
#'
#' Example DESeq2 differential analysis result.
#'
#' @examples
#'   head(deseq_data)
"deseq_data"

#' exists_anno_list
#'
#' GEO GPL platforms with direct AnnoProbe annotation support.
#'
#' @examples
#'   exists_anno_list
"exists_anno_list"

#' exp_hub1
#'
#' Example TCGA+GTEx expression matrix.
#'
#' @examples
#'   exp_hub1[1:4,1:4]
"exp_hub1"


#' exprSet_hub1
#'
#' Example TCGA CPM matrix with tumor samples only.
#'
#' @examples
#'   exprSet_hub1[1:4,1:4]
"exprSet_hub1"


#' genes
#'
#' Small example vector of Entrez IDs.
#'
#' @examples
#'   genes
"genes"

#' lnc_anno
#'
#' Compact lncRNA annotation table for TCGA expression matrices.
#'
#' Only the columns needed by the package are kept, so the bundled object stays
#' small and can be used offline without extra annotation files.
#'
#' @examples
#'   head(lnc_anno)
"lnc_anno"

#' mRNA_anno
#'
#' Compact mRNA annotation table for TCGA expression matrices.
#'
#' Only the columns needed by the package are kept, so the bundled object stays
#' small and can be used offline without extra annotation files.
#'
#' @examples
#'   head(mRNA_anno)
"mRNA_anno"

#' meta1
#'
#' Example clinical table matched to exprSet_hub1.
#'
#' @examples
#'   head(meta1)
"meta1"

#' pkg_all
#'
#' Lookup table for GEO platform annotation packages.
#'
#' @examples
#'   head(pkg_all)
"pkg_all"
