Last updated on 2026-02-07 09:50:08 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| colorhcplot | 13 | ||
| easyPubMed | 13 | ||
| mutSignatures | 2 | 11 | |
| TCGAretriever | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.1.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Damiano",
family = "Fantini",
role = c("aut", "cre"),
email = "damiano.fantini@gmail.com"),
person(given = "Vania",
family = "Vidimar",
role = "aut"),
person(given = c("Joshua", "J"),
family = "Meeks",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 3, OK: 10
Version: 1.10.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown
Quitting from getting_started_with_TCGAretriever.Rmd:43-57 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. ├─base::grepl("tcga_pub$", all_studies[, "studyId"])
2. │ └─base::is.factor(x)
3. ├─all_studies[, "studyId"]
4. └─base::`[.data.frame`(all_studies, , "studyId")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started_with_TCGAretriever.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘getting_started_with_TCGAretriever.Rmd’
SUMMARY: processing the following file failed:
‘getting_started_with_TCGAretriever.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.10.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown
Quitting from getting_started_with_TCGAretriever.Rmd:43-57 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. ├─base::grepl("tcga_pub$", all_studies[, "studyId"])
2. │ └─base::is.factor(x)
3. ├─all_studies[, "studyId"]
4. └─base::`[.data.frame`(all_studies, , "studyId")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started_with_TCGAretriever.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘getting_started_with_TCGAretriever.Rmd’
SUMMARY: processing the following file failed:
‘getting_started_with_TCGAretriever.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang