Last updated on 2026-03-17 08:52:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.5 | 28.07 | 315.93 | 344.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.5 | 18.89 | 187.89 | 206.78 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.5 | 50.00 | 507.19 | 557.19 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.6.5 | 53.00 | 587.38 | 640.38 | OK | |
| r-devel-macos-arm64 | 0.6.5 | 7.00 | 101.00 | 108.00 | OK | |
| r-devel-windows-x86_64 | 0.6.5 | 40.00 | 350.00 | 390.00 | OK | |
| r-patched-linux-x86_64 | 0.6.5 | 30.56 | 302.52 | 333.08 | OK | |
| r-release-linux-x86_64 | 0.6.5 | 23.77 | 300.82 | 324.59 | OK | |
| r-release-macos-arm64 | 0.6.5 | OK | ||||
| r-release-macos-x86_64 | 0.6.5 | 20.00 | 282.00 | 302.00 | OK | |
| r-release-windows-x86_64 | 0.6.5 | 41.00 | 344.00 | 385.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.5 | OK | ||||
| r-oldrel-macos-x86_64 | 0.6.5 | 20.00 | 260.00 | 280.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.5 | 58.00 | 456.00 | 514.00 | OK |
Version: 0.6.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘EDA.Rmd’ using rmarkdown
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, x$check.overlap)
2: drawDetails.text(x, recording = FALSE)
3: drawDetails(x, recording = FALSE)
4: drawGrob(x)
5: recordGraphics(drawGrob(x), list(x = x), getNamespace("grid"))
6: grid.draw.grob(x$children[[i]], recording = FALSE)
7: grid.draw(x$children[[i]], recording = FALSE)
8: drawGTree(x)
9: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
10: grid.draw.gTree(x$children[[i]], recording = FALSE)
11: grid.draw(x$children[[i]], recording = FALSE)
12: drawGTree(x)
13: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
14: grid.draw.gTree(g)
15: grid.draw(g)
16: gridExtra::grid.arrange(top_left, top_right, bottom_left, bottom_right, ncol = 2, nrow = 2, top = top)
17: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
18: suppressWarnings(gridExtra::grid.arrange(top_left, top_right, bottom_left, bottom_right, ncol = 2, nrow = 2, top = top))
19: plot_normality_raw(x, left, right, main, col, typographic, base_family)
20: plot_normality(df, x, left, right, col, typographic, base_family)
21: FUN(X[[i]], ...)
22: lapply(vars[idx_numeric], function(x) plot_normality(df, x, left, right, col, typographic, base_family))
23: plot_normality_impl(.data, vars, left, right, col, typographic, base_family)
24: plot_normality.data.frame(carseats, Sales, CompPrice)
25: plot_normality(carseats, Sales, CompPrice)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("EDA.Rmd", "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dlookr.Rcheck/vign_test/dlookr", TRUE, FALSE, "EDA", "UTF-8", "/tmp/RtmpLczTHd/file28b4d13b10f955.rds")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
--- re-building ‘diagonosis.Rmd’ using rmarkdown
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, x$check.overlap)
2: drawDetails.text(x, recording = FALSE)
3: drawDetails(x, recording = FALSE)
4: drawGrob(x)
5: recordGraphics(drawGrob(x), list(x = x), getNamespace("grid"))
6: grid.draw.grob(x$children[[i]], recording = FALSE)
7: grid.draw(x$children[[i]], recording = FALSE)
8: drawGTree(x)
9: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
10: grid.draw.gTree(x$children[[i]], recording = FALSE)
11: grid.draw(x$children[[i]], recording = FALSE)
12: drawGTree(x)
13: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
14: grid.draw.gTree(g)
15: grid.draw(g)
16: gridExtra::grid.arrange(top_left, top_right, bottom_left, bottom_right, ncol = 2, nrow = 2, widths = c(2, 3), top = top)
17: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
18: suppressWarnings(gridExtra::grid.arrange(top_left, top_right, bottom_left, bottom_right, ncol = 2, nrow = 2, widths = c(2, 3), top = top))
19: plot_outlier_raw(x, main, col, typographic, base_family)
20: plot_outliers(df, x, col, typographic, base_family)
21: FUN(X[[i]], ...)
22: lapply(vars[idx_numeric][!idx_na], function(x) plot_outliers(df, x, col, typographic, base_family))
23: plot_outlier_impl(.data, vars, col, typographic, base_family)
24: plot_outlier.data.frame(., arr_delay)
25: plot_outlier(., arr_delay)
26: flights %>% plot_outlier(arr_delay)
27: eval(expr, envir)
28: eval(expr, envir)
29: withVisible(eval(expr, envir))
30: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
31: eval(call)
32: eval(call)
33: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
34: doWithOneRestart(return(expr), restart)
35: withOneRestart(expr, restarts[[1L]])
36: withRestartList(expr, restarts[-nr])
37: doWithOneRestart(return(expr), restart)
38: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
39: withRestartList(expr, restarts)
40: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
41: evaluate::evaluate(...)
42: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
43: in_dir(input_dir(), expr)
44: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
45: eng_r(options)
46: block_exec(params)
47: call_block(x)
48: process_group(group)
49: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
50: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
51: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
52: process_file(text, output)
53: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
54: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
55: vweave_rmarkdown(...)
56: engine$weave(file, quiet = quiet, encoding = enc)
57: doTryCatch(return(expr), name, parentenv, handler)
58: tryCatchOne(expr, names, parentenv, handlers[[1L]])
59: tryCatchList(expr, classes, parentenv, handlers)
60: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
61: tools:::.buildOneVignette("diagonosis.Rmd", "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dlookr.Rcheck/vign_test/dlookr", TRUE, FALSE, "diagonosis", "UTF-8", "/tmp/RtmpLczTHd/file28b4d11b0679e1.rds")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
--- re-building ‘introduce.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘introduce.Rmd’
--- re-building ‘transformation.Rmd’ using rmarkdown
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, x$check.overlap)
2: drawDetails.text(x, recording = FALSE)
3: drawDetails(x, recording = FALSE)
4: drawGrob(x)
5: recordGraphics(drawGrob(x), list(x = x), getNamespace("grid"))
6: grid.draw.grob(x$children[[i]], recording = FALSE)
7: grid.draw(x$children[[i]], recording = FALSE)
8: drawGTree(x)
9: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
10: grid.draw.gTree(x$children[[i]], recording = FALSE)
11: grid.draw(x$children[[i]], recording = FALSE)
12: drawGTree(x)
13: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
14: grid.draw.gTree(x$children[[i]], recording = FALSE)
15: grid.draw(x$children[[i]], recording = FALSE)
16: drawGTree(x)
17: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
18: grid.draw.gTree(gtable)
19: grid.draw(gtable)
20: `print.ggplot2::ggplot`(x)
21: print(x)
22: normal_print(x)
23: knit_print.default(x, ...)
24: knit_print(x, ...)
25: withVisible(knit_print(x, ...))
26: fun(x, options = options)
27: handler$value(value, visible)
28: handle_value(handler, value, visible, envir)
29: withVisible(handle_value(handler, value, visible, envir))
30: watcher$print_value(ev$value, ev$visible, envir)
31: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
32: eval(call)
33: eval(call)
34: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
35: doWithOneRestart(return(expr), restart)
36: withOneRestart(expr, restarts[[1L]])
37: withRestartList(expr, restarts[-nr])
38: doWithOneRestart(return(expr), restart)
39: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
40: withRestartList(expr, restarts)
41: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
42: evaluate::evaluate(...)
43: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
44: in_dir(input_dir(), expr)
45: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
46: eng_r(options)
47: block_exec(params)
48: call_block(x)
49: process_group(group)
50: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
51: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
52: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
53: process_file(text, output)
54: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
55: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
56: vweave_rmarkdown(...)
57: engine$weave(file, quiet = quiet, encoding = enc)
58: doTryCatch(return(expr), name, parentenv, handler)
59: tryCatchOne(expr, names, parentenv, handlers[[1L]])
60: tryCatchList(expr, classes, parentenv, handlers)
61: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
62: tools:::.buildOneVignette("transformation.Rmd", "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dlookr.Rcheck/vign_test/dlookr", TRUE, FALSE, "transformation", "UTF-8", "/tmp/RtmpLczTHd/file28b4d17c9b0632.rds")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
SUMMARY: processing the following files failed:
‘EDA.Rmd’ ‘diagonosis.Rmd’ ‘transformation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc