Last updated on 2026-01-19 09:49:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.42 | 255.72 | 269.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 11.03 | 238.46 | 249.49 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 29.00 | 323.15 | 352.15 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 30.00 | 416.93 | 446.93 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 195.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.45 | 276.00 | 291.45 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 13.99 | 270.09 | 284.08 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 214.00 | 224.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 22.00 | 200.00 | 222.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 296.00 | 306.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 243.00 | 267.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/171s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.541, system: 0.044, elapsed: 2.520 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.548, system: 0.096, elapsed: 13.803 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.015, elapsed: 0.909 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.595, system: 0.629, elapsed: 22.694 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.185 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.636, system: 0.808, elapsed: 40.984 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.609, system: 0.046, elapsed: 2.273 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.575, system: 0.132, elapsed: 12.660 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.015, elapsed: 0.425 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.937, system: 0.689, elapsed: 10.822 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.179 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.123, system: 0.910, elapsed: 27.134 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.637, system: 0.048, elapsed: 2.101 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.587, system: 0.084, elapsed: 21.680 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.314, system: 0.015, elapsed: 1.261 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.781, system: 0.693, elapsed: 31.647 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.011, elapsed: 0.284 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.265, system: 0.354, elapsed: 1.097 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.484, system: 1.248, elapsed: 59.041 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.701, system: 0.060, elapsed: 2.093 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.596, system: 0.124, elapsed: 11.852 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.359, system: 0.031, elapsed: 0.215 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.029, system: 0.967, elapsed: 7.965 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.003, elapsed: 0.215 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.199, system: 0.559, elapsed: 13.274 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 32.862, system: 1.785, elapsed: 36.511 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/208s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.036, elapsed: 4.153 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.548, system: 0.069, elapsed: 27.597 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.017, elapsed: 0.547 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.282, system: 0.435, elapsed: 12.793 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.478 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.354, system: 0.585, elapsed: 47.247 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.573, system: 0.032, elapsed: 4.513 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.516, system: 0.056, elapsed: 25.716 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.012, elapsed: 0.579 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.285, system: 0.432, elapsed: 12.337 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.005, elapsed: 0.425 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.301, system: 0.560, elapsed: 45.158 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.580, system: 0.042, elapsed: 4.626 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.643, system: 0.135, elapsed: 26.262 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.014, elapsed: 0.549 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.309, system: 0.386, elapsed: 8.366 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.005, elapsed: 0.311 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.154, system: 0.304, elapsed: 1.329 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.725, system: 0.916, elapsed: 43.041 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.557, system: 0.029, elapsed: 3.767 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.501, system: 0.065, elapsed: 19.427 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.013, elapsed: 0.362 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.249, system: 0.409, elapsed: 10.553 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.479 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.832, system: 0.519, elapsed: 24.477 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.186, system: 1.061, elapsed: 60.599 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64