Last updated on 2025-03-15 08:52:41 CET.
Package | WARN | NOTE | OK |
---|---|---|---|
CongreveLamsdell2016 | 15 | ||
PlotTools | 15 | ||
Quartet | 15 | ||
Rogue | 15 | ||
TBRDist | 15 | ||
Ternary | 6 | 9 | |
TotalCopheneticIndex | 15 | ||
TreeDist | 7 | 8 | |
TreeSearch | 1 | 9 | 5 |
TreeTools | 4 | 11 |
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: NOTE: 15
Version: 1.0.2
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.2
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
libs 5.1Mb
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 6, OK: 9
Version: 2.3.3
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 5.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 15
Current CRAN status: NOTE: 7, OK: 8
Version: 2.9.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TreeDistData’
Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.9.2
Check: installed package size
Result: NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
doc 4.9Mb
libs 3.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 1, NOTE: 9, OK: 5
Version: 1.5.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
AdditionTree.Rd: ImposeConstraint
AllSPR.Rd: phylo
CharacterLength.Rd: phylo
ConcordantInformation.Rd: phylo
Consistency.Rd: phylo
DoubleNNI.Rd: phylo
JackLabels.Rd: phylo
Jackknife.Rd: phylo
MaximizeParsimony.Rd: phylo, ImposeConstraint
MorphyTreeLength.Rd: RenumberTips, phylo
NNI.Rd: phylo
PlotCharacter.Rd: phylo
Ratchet.Rd: phylo
RearrangeEdges.Rd: phylo
SPR.Rd: phylo
SiteConcordance.Rd: phylo
StopUnlessBifurcating.Rd: phylo
SuccessiveApproximations.Rd: phylo
TBR.Rd: phylo
TBRWarning.Rd: phylo
TaxonInfluence.Rd: ClusteringInfoDistance, write.nexus, path_sanitize
TreeSearch.Rd: phylo
cSPR.Rd: phylo
dot-NonDuplicateRoot.Rd: phylo
inapplicable.datasets.Rd: read.nexus.data
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 1.5.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rd warning: AdditionTree.Rd:27: missing link ‘ImposeConstraint’
Rd warning: AllSPR.Rd:11: missing link ‘phylo’
Rd warning: AllSPR.Rd:14: missing link ‘phylo’
Rd warning: AllSPR.Rd:16: missing link ‘phylo’
Rd warning: CharacterLength.Rd:16: missing link ‘phylo’
Rd warning: ConcordantInformation.Rd:16: missing link ‘phylo’
Rd warning: Consistency.Rd:13: missing link ‘phylo’
Rd warning: DoubleNNI.Rd:11: missing link ‘phylo’
Rd warning: DoubleNNI.Rd:14: missing link ‘phylo’
Rd warning: JackLabels.Rd:20: missing link ‘phylo’
Rd warning: Jackknife.Rd:23: missing link ‘phylo’
Rd warning: MaximizeParsimony.Rd:52: missing link ‘phylo’
Rd warning: MaximizeParsimony.Rd:112: missing link ‘ImposeConstraint’
Rd warning: MorphyTreeLength.Rd:26: missing link ‘RenumberTips’
Rd warning: MorphyTreeLength.Rd:33: missing link ‘phylo’
Rd warning: MorphyTreeLength.Rd:36: missing link ‘phylo’
Rd warning: NNI.Rd:27: missing link ‘phylo’
Rd warning: NNI.Rd:40: missing link ‘phylo’
Rd warning: NNI.Rd:43: missing link ‘phylo’
Rd warning: PlotCharacter.Rd:25: missing link ‘phylo’
Rd warning: Ratchet.Rd:106: missing link ‘phylo’
Rd warning: RearrangeEdges.Rd:22: missing link ‘phylo’
Rd warning: RearrangeEdges.Rd:25: missing link ‘phylo’
Rd warning: SPR.Rd:42: missing link ‘phylo’
Rd warning: SPR.Rd:49: missing link ‘phylo’
Rd warning: SPR.Rd:52: missing link ‘phylo’
Rd warning: SPR.Rd:55: missing link ‘phylo’
Rd warning: SiteConcordance.Rd:23: missing link ‘phylo’
Rd warning: StopUnlessBifurcating.Rd:11: missing link ‘phylo’
Rd warning: SuccessiveApproximations.Rd:25: missing link ‘phylo’
Rd warning: TBR.Rd:40: missing link ‘phylo’
Rd warning: TBR.Rd:54: missing link ‘phylo’
Rd warning: TBR.Rd:57: missing link ‘phylo’
Rd warning: TBRWarning.Rd:15: missing link ‘phylo’
Rd warning: TBRWarning.Rd:18: missing link ‘phylo’
Rd warning: TaxonInfluence.Rd:29: missing link ‘ClusteringInfoDistance’
Rd warning: TaxonInfluence.Rd:35: missing link ‘write.nexus’
Rd warning: TaxonInfluence.Rd:39: missing link ‘path_sanitize’
Rd warning: TreeSearch.Rd:86: missing link ‘phylo’
Rd warning: cSPR.Rd:10: missing link ‘phylo’
Rd warning: dot-NonDuplicateRoot.Rd:11: missing link ‘phylo’
Rd warning: dot-NonDuplicateRoot.Rd:14: missing link ‘phylo’
Rd warning: dot-NonDuplicateRoot.Rd:17: missing link ‘phylo’
Rd warning: inapplicable.datasets.Rd:149: missing link ‘read.nexus.data’
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/TreeSearch.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-14 (Debian 14.2.0-17) 14.2.0’
* used C++ compiler: ‘g++-14 (Debian 14.2.0-17) 14.2.0’
Flavor: r-patched-linux-x86_64
Version: 1.5.1
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
datasets 1.6Mb
doc 1.3Mb
libs 1.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 4, OK: 11
Version: 1.13.0
Check: installed package size
Result: NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 3.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64