CRAN Package Check Results for Maintainer ‘Michael Kleinsasser <mkleinsa at umich.edu>’

Last updated on 2026-03-20 08:54:28 CET.

Package ERROR NOTE OK
AEenrich 14
bama 14
FEprovideR 14
gigg 14
INTRIGUE 2 12
medScan 14
messi 14
MetaIntegration 14
PPMR 14
qif 14
snSMART 1 13
StackImpute 14
SynDI 14

Package AEenrich

Current CRAN status: OK: 14

Package bama

Current CRAN status: OK: 14

Package FEprovideR

Current CRAN status: OK: 14

Package gigg

Current CRAN status: NOTE: 14

Version: 0.2.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’ The Description field contains (2021) <arXiv:2102.10670>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.1
Check: Rd files
Result: NOTE checkRd: (-1) gigg.Rd:70-77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gigg.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package INTRIGUE

Current CRAN status: NOTE: 2, OK: 12

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package medScan

Current CRAN status: OK: 14

Package messi

Current CRAN status: OK: 14

Package MetaIntegration

Current CRAN status: NOTE: 14

Version: 0.1.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’ The Description field contains (2020) <arXiv:2010.09971>. A meta-analysis framework along with two Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: Rd files
Result: NOTE checkRd: (-1) asympVar_LinReg.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LinReg.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LinReg.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LinReg.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LinReg.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LogReg.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LogReg.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LogReg.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LogReg.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) asympVar_LogReg.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_gamma_EB.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_gamma_EB.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_gamma_EB.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.1.2
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘knitr’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package PPMR

Current CRAN status: OK: 14

Package qif

Current CRAN status: NOTE: 14

Version: 1.5
Check: Rd files
Result: NOTE checkRd: (-1) qif.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) qif.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package snSMART

Current CRAN status: ERROR: 1, OK: 13

Version: 0.2.4
Check: examples
Result: ERROR Running examples in ‘snSMART-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: group_seq > ### Title: BJSM method for interim analysis and final analysis of group > ### sequential trial design > ### Aliases: group_seq print.summary.group_seq print.group_seq > > ### ** Examples > > mydata <- groupseqDATA_look1 > > result1 <- group_seq( + data = mydata, interim = TRUE, drop_threshold_pair = c(0.5, 0.4), + prior_dist = c("beta", "beta", "pareto"), pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6), + beta_prior = c(1.6, 0.4, 3, 1), MCMC_SAMPLE = 6000, n.adapt = 1000, n_MCMC_chain = 1 + ) Interim Analysis Outcome: Threshold tau_l is set to: 0.5 Threshold psi_l is set to: 0.4 Step 1: Arm C's interim posterior probability of having the greatest response is bigger than threshold 0.5 Step 2: Arm A's interim posterior probability of having the lowest response is higher Arm A is dropped > > summary(result1) Arm A is dropped Iterations = 1101:7100 Thinning interval = 1 Number of chains = 1 Sample size per chain = 6000 1. Empirical mean and standard deviation for each variable, plus standard error of the mean: Mean SD Naive SE Time-series SE beta[1] 0.777 0.2150 0.00278 0.00644 beta[2] 1.246 0.2883 0.00372 0.01093 beta[3] 0.695 0.2787 0.00360 0.00781 beta[4] 1.350 0.3187 0.00411 0.00897 beta[5] 0.838 0.1957 0.00253 0.00697 beta[6] 1.208 0.2051 0.00265 0.00651 pi[1] 0.290 0.0899 0.00116 0.00182 pi[2] 0.423 0.0838 0.00108 0.00178 pi[3] 0.572 0.1093 0.00141 0.00256 2. Quantiles for each variable: 2.5% 25% 50% 75% 97.5% beta[1] 0.281 0.634 0.839 0.966 1.000 beta[2] 1.005 1.064 1.153 1.320 2.051 beta[3] 0.101 0.479 0.770 0.953 1.000 beta[4] 1.011 1.115 1.262 1.504 2.182 beta[5] 0.307 0.753 0.920 0.987 1.000 beta[6] 1.005 1.063 1.151 1.287 1.736 pi[1] 0.135 0.226 0.284 0.347 0.479 pi[2] 0.263 0.366 0.422 0.479 0.590 pi[3] 0.353 0.497 0.574 0.648 0.779 > > > mydata <- groupseqDATA_full > result2 <- group_seq( + data = mydata, interim = FALSE, prior_dist = c("beta", "beta", "pareto"), + pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6), + beta_prior = c(1.6, 0.4, 3, 1), MCMC_SAMPLE = 6000, n.adapt = 1000, + n_MCMC_chain = 1, ci = 0.95, DTR = TRUE + ) Error in update.jags(model, n.iter, ...) : Error in node beta[5] Slicer stuck at value with infinite density Calls: group_seq ... do.call -> <Anonymous> -> jags.samples -> update.jags Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package StackImpute

Current CRAN status: NOTE: 14

Version: 0.1.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Mike Kleinsasser <mkleinsa@umich.edu>’ The Description field contains stacking” <arXiv:2101.07954>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: Rd files
Result: NOTE checkRd: (-1) stackExample.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) stackExample.Rd:11: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘MASS’ ‘mice’ ‘sandwich’ ‘zoo’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package SynDI

Current CRAN status: NOTE: 14

Version: 0.1.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’ The Description field contains populations <arXiv:2106.06835>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: Rd files
Result: NOTE checkRd: (-1) create_synthetic_example.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) create_synthetic_example.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) create_synthetic_example.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) initial_estimates_example.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) initial_estimates_example.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) initial_estimates_example.Rd:12: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘MASS’ ‘StackImpute’ ‘arm’ ‘boot’ ‘broom’ ‘knitr’ ‘mvtnorm’ ‘randomForest’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc