CRAN Package Check Results for Package mlr3pipelines

Last updated on 2026-03-01 09:51:31 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.10.0 37.32 825.25 862.57 OK
r-devel-linux-x86_64-debian-gcc 0.10.0 23.23 533.77 557.00 OK
r-devel-linux-x86_64-fedora-clang 0.10.0 65.00 1204.62 1269.62 OK
r-devel-linux-x86_64-fedora-gcc 0.11.0 67.00 1212.29 1279.29 OK
r-devel-macos-arm64 0.11.0 8.00 120.00 128.00 OK
r-devel-windows-x86_64 0.10.0 37.00 593.00 630.00 OK
r-patched-linux-x86_64 0.10.0 52.10 746.38 798.48 OK
r-release-linux-x86_64 0.10.0 36.68 734.52 771.20 OK
r-release-macos-arm64 0.11.0 8.00 113.00 121.00 OK
r-release-macos-x86_64 0.10.0 26.00 542.00 568.00 OK
r-release-windows-x86_64 0.10.0 38.00 554.00 592.00 OK
r-oldrel-macos-arm64 0.11.0 8.00 109.00 117.00 ERROR
r-oldrel-macos-x86_64 0.10.0 27.00 1012.00 1039.00 ERROR
r-oldrel-windows-x86_64 0.10.0 56.00 676.00 732.00 ERROR

Check Details

Version: 0.11.0
Check: examples
Result: ERROR Running examples in ‘mlr3pipelines-Ex.R’ failed The error most likely occurred in: > ### Name: mlr_pipeops_nmf > ### Title: Non-negative Matrix Factorization > ### Aliases: mlr_pipeops_nmf PipeOpNMF > > ### ** Examples > > ## Don't show: > if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf + ## End(Don't show) + ## Don't show: + # NMF attaches these packages to search path on load, #929 + lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE) + ## End(Don't show) + library("mlr3") + + task = tsk("iris") + pop = po("nmf") + + task$data() + pop$train(list(task))[[1]]$data() + + pop$state + ## Don't show: + # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112 + # Necessary as detaching packages does not remove registered S3 methods + suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE)) + ## End(Don't show) + ## Don't show: + }) # examplesIf > lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), + detach, character.only = TRUE) Error in FUN(X[[i]], ...) : invalid 'name' argument Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.11.0
Check: tests
Result: ERROR Running ‘testthat.R’ [90s/44s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_multiplicities.R: > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-03-01 20:20:49.168677: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.168916: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.172331: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.17855: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.189982: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.190121: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.192392: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.198324: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.204616: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.204751: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.209303: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.223719: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.22405: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.229225: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.229342: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.233818: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.248553: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.248891: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.268639: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.268747: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.278535: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.313643: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.325665: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.325847: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.334612: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.41244: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.413519: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.444679: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.444802: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.451193: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.457512: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.46579: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.465933: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.470112: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.485853: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.486239: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.513814: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.513921: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.515958: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.521928: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.533501: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.533666: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.538235: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.553002: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.553374: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.578075: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.578205: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.580256: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.586187: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.596023: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.596159: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.599769: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.614142: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.61451: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.631543: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.631649: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.633848: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.639847: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.651013: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.651161: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.683725: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.698543: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.698914: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.721565: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.721673: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.723858: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.729792: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.739848: L-Isomap embed START > test_pipeop_isomap.R: 2026-03-01 20:20:49.74001: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.74447: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.761092: embedding > test_pipeop_isomap.R: 2026-03-01 20:20:49.761473: DONE > test_pipeop_isomap.R: 2026-03-01 20:20:49.783426: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.783587: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.785856: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.792573: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.812292: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.812407: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.814719: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.820767: Classical Scaling > test_pipeop_isomap.R: 2026-03-01 20:20:49.825958: Isomap START > test_pipeop_isomap.R: 2026-03-01 20:20:49.826074: constructing knn graph > test_pipeop_isomap.R: 2026-03-01 20:20:49.828372: calculating geodesic distances > test_pipeop_isomap.R: 2026-03-01 20:20:49.834415: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] ══ Skipped tests (128) ═════════════════════════════════════════════════════════ • On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_doublearrow.R:2:1', 'test_gunion.R:2:1', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_classweightsex.R:9:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_ppl.R:63:3', 'test_typecheck.R:188:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.10.0
Check: examples
Result: ERROR Running examples in ‘mlr3pipelines-Ex.R’ failed The error most likely occurred in: > ### Name: mlr_pipeops_nmf > ### Title: Non-negative Matrix Factorization > ### Aliases: mlr_pipeops_nmf PipeOpNMF > > ### ** Examples > > ## Don't show: > if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf + ## End(Don't show) + ## Don't show: + # NMF attaches these packages to search path on load, #929 + lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE) + ## End(Don't show) + library("mlr3") + + task = tsk("iris") + pop = po("nmf") + + task$data() + pop$train(list(task))[[1]]$data() + + pop$state + ## Don't show: + # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112 + # Necessary as detaching packages does not remove registered S3 methods + suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE)) + ## End(Don't show) + ## Don't show: + }) # examplesIf > lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), + detach, character.only = TRUE) Error in FUN(X[[i]], ...) : invalid 'name' argument Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN Execution halted Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [408s/491s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-02-27 01:29:03.399151: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:03.399967: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:03.416103: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:03.434603: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:03.50995: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:03.510327: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:03.51764: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:03.574016: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:03.73668: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:03.73716: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:03.791667: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:03.89158: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:03.896006: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:03.930617: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:03.930925: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:04.023799: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:04.075842: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:04.07712: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:04.203259: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:04.203566: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:04.242487: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:04.388786: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:04.42908: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:04.429915: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:04.479302: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:04.768006: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:04.7743: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:04.960508: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:04.962507: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:04.973301: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:04.998662: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:05.059137: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:05.060964: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:05.106994: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:05.161383: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:05.162826: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:05.449233: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:05.449539: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:05.461642: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:05.484978: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:05.539906: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:05.540343: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:05.700235: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:05.801171: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:05.810546: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:05.950505: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:05.95081: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:05.95859: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:05.981624: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:06.056112: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:06.056597: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:06.121029: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:06.21348: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:06.214874: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:06.356239: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:06.356571: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:06.364343: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:06.451169: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:06.575458: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:06.575922: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:06.615386: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:06.711864: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:06.714633: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:06.936186: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:06.936555: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:06.954898: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:06.981995: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:07.047532: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-27 01:29:07.047965: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:07.074434: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:07.141736: embedding > test_pipeop_isomap.R: 2026-02-27 01:29:07.143025: DONE > test_pipeop_isomap.R: 2026-02-27 01:29:07.234886: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:07.23518: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:07.243438: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:07.265758: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:07.347316: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:07.347631: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:07.368454: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:07.394061: Classical Scaling > test_pipeop_isomap.R: 2026-02-27 01:29:07.421289: Isomap START > test_pipeop_isomap.R: 2026-02-27 01:29:07.421576: constructing knn graph > test_pipeop_isomap.R: 2026-02-27 01:29:07.429301: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-27 01:29:07.459085: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64

Version: 0.10.0
Check: tests
Result: ERROR Running 'testthat.R' [294s] Running the tests in 'tests/testthat.R' failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-02-25 16:53:35.175809: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:35.176823: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:35.190077: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:35.212139: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:35.291769: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:35.292485: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:35.305269: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:35.327881: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:35.375384: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:35.376312: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:35.41152: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:35.455348: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:35.457078: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:35.504244: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:35.505022: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:35.525146: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:35.575999: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:35.577889: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:35.712001: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:35.712591: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:35.736012: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:35.841057: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:35.879798: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:35.880448: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:36.004977: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:36.243402: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:36.250602: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:36.487825: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:36.488453: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:36.498584: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:36.521234: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:36.569843: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:36.570687: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:36.593: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:36.64245: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:36.64431: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:36.858807: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:36.859413: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:36.870062: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:36.893007: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:36.96995: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:36.970851: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:36.995393: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.047838: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:37.050014: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:37.191469: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:37.192106: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:37.203523: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.224898: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:37.301394: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:37.302275: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:37.323626: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.360074: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:37.361463: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:37.492268: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:37.492909: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:37.502373: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.522678: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:37.594993: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:37.595875: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:37.617954: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.667016: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:37.668821: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:37.775062: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:37.775654: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:37.788062: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.810837: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:37.893541: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-25 16:53:37.894448: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:37.916797: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:37.954928: embedding > test_pipeop_isomap.R: 2026-02-25 16:53:37.955997: DONE > test_pipeop_isomap.R: 2026-02-25 16:53:38.059554: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:38.059993: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:38.067583: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:38.08821: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:38.197578: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:38.198193: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:38.209329: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:38.225198: Classical Scaling > test_pipeop_isomap.R: 2026-02-25 16:53:38.250183: Isomap START > test_pipeop_isomap.R: 2026-02-25 16:53:38.250623: constructing knn graph > test_pipeop_isomap.R: 2026-02-25 16:53:38.257674: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-25 16:53:38.277822: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64