CRAN Package Check Results for Package mlr3pipelines

Last updated on 2026-02-04 09:51:46 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.10.0 40.17 817.53 857.70 ERROR
r-devel-linux-x86_64-debian-gcc 0.10.0 22.62 548.01 570.63 OK
r-devel-linux-x86_64-fedora-clang 0.10.0 70.00 1412.01 1482.01 OK
r-devel-linux-x86_64-fedora-gcc 0.10.0 67.00 1364.59 1431.59 OK
r-devel-windows-x86_64 0.10.0 40.00 578.00 618.00 OK
r-patched-linux-x86_64 0.10.0 53.83 752.54 806.37 OK
r-release-linux-x86_64 0.10.0 35.82 732.80 768.62 OK
r-release-macos-arm64 0.10.0 OK
r-release-macos-x86_64 0.10.0 26.00 542.00 568.00 OK
r-release-windows-x86_64 0.10.0 39.00 537.00 576.00 OK
r-oldrel-macos-arm64 0.10.0 8.00 124.00 132.00 ERROR
r-oldrel-macos-x86_64 0.10.0 26.00 661.00 687.00 ERROR
r-oldrel-windows-x86_64 0.10.0 54.00 666.00 720.00 ERROR

Check Details

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [488s/242s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. Saving _problems/test_filter_ensemble-294.R Saving _problems/test_filter_ensemble-307.R > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr > test_mlr_graphs_robustify.R: ecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: > test_multiplicities.R: [1] > test_multiplicities.R: 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_isomap.R: 2026-02-03 04:51:33.591216: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:33.593428: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:33.603933: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:33.62289: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:33.677984: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:33.67846: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:33.68585: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:33.703682: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:33.73178: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:33.732453: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:33.74637: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:33.788973: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:33.790092: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:33.822519: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:33.822989: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:33.838827: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:33.879396: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:33.880697: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:33.973358: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:33.973804: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:34.011797: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:34.107509: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:34.144359: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:34.145037: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:34.170583: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:34.36366: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:34.367803: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:34.519492: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:34.519962: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:34.527302: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:34.54808: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:34.582989: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:34.583663: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:34.598642: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:34.637562: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:34.640276: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:34.789925: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:34.790399: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:34.79993: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:34.818546: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:34.871274: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:34.871939: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:34.887447: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:34.929173: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:34.930439: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:35.036318: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:35.036798: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.045685: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.065105: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:35.141524: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:35.142203: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.156051: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.19831: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:35.1995: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:35.284963: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:35.285413: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.294199: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.312884: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:35.369542: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:35.370255: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.384516: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.426895: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:35.428144: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:35.516328: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:35.516793: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.5258: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.544499: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:35.601755: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-03 04:51:35.602459: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.616527: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.658291: embedding > test_pipeop_isomap.R: 2026-02-03 04:51:35.659514: DONE > test_pipeop_isomap.R: 2026-02-03 04:51:35.759002: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:35.759484: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.767092: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.787857: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:35.880538: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:35.881011: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.902294: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.921105: Classical Scaling > test_pipeop_isomap.R: 2026-02-03 04:51:35.947976: Isomap START > test_pipeop_isomap.R: 2026-02-03 04:51:35.948458: constructing knn graph > test_pipeop_isomap.R: 2026-02-03 04:51:35.955863: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-03 04:51:35.97501: Classical Scaling > test_pipeop_nmf.R: [PipeOpNMFstate] > test_pipeop_nmf.R: [PipeOpNMFstate] > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead. > test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated"). > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ] ══ Skipped tests (100) ═════════════════════════════════════════════════════════ • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE. Differences: `actual` is a character vector ('Mean relative difference: 0.2819739') `expected` is a logical vector (TRUE) Backtrace: ▆ 1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3 2. └─testthat::expect_true(...) [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.10.0
Check: examples
Result: ERROR Running examples in ‘mlr3pipelines-Ex.R’ failed The error most likely occurred in: > ### Name: mlr_pipeops_nmf > ### Title: Non-negative Matrix Factorization > ### Aliases: mlr_pipeops_nmf PipeOpNMF > > ### ** Examples > > ## Don't show: > if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf + ## End(Don't show) + ## Don't show: + # NMF attaches these packages to search path on load, #929 + lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE) + ## End(Don't show) + library("mlr3") + + task = tsk("iris") + pop = po("nmf") + + task$data() + pop$train(list(task))[[1]]$data() + + pop$state + ## Don't show: + # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112 + # Necessary as detaching packages does not remove registered S3 methods + suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE)) + ## End(Don't show) + ## Don't show: + }) # examplesIf > lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), + detach, character.only = TRUE) Error in FUN(X[[i]], ...) : invalid 'name' argument Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [112s/56s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-02-04 11:17:37.206165: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.206442: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.209693: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.21585: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.227632: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.227784: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.23015: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.236278: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.2435: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.243681: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.248407: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.264022: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.264423: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.270356: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.270477: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.274849: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.289896: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.29023: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.309228: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.309342: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.313885: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.34846: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.357503: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.357687: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.371446: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.45116: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.452343: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.488145: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.488277: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.490755: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.497171: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.504159: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.504353: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.509176: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.524847: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.525276: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.755116: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.755242: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.757447: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.763133: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.779231: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.779437: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.78426: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.799318: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.799714: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.816365: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.816481: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.818882: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.824996: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.83628: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.836429: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.840553: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.853845: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.854177: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.872833: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.872966: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.875296: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.881547: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.893492: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.893659: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.898391: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.911896: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.912184: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.936828: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.936964: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.939261: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.945408: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:37.956777: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 11:17:37.95718: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.961389: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:37.976169: embedding > test_pipeop_isomap.R: 2026-02-04 11:17:37.976582: DONE > test_pipeop_isomap.R: 2026-02-04 11:17:37.997095: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:37.997218: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:37.99963: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:38.005844: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:38.024767: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:38.024891: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:38.027233: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:38.033703: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 11:17:38.039397: Isomap START > test_pipeop_isomap.R: 2026-02-04 11:17:38.039513: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 11:17:38.04181: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 11:17:38.047984: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.10.0
Check: tests
Result: ERROR Running ‘testthat.R’ [322s/408s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-02-04 01:33:11.85636: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:11.856908: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:11.886984: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:11.928552: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:12.043967: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:12.044282: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:12.051427: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:12.125098: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:12.182459: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:12.182929: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:12.229846: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:12.331342: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:12.332587: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:12.383436: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:12.383762: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:12.417641: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:12.570022: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:12.5729: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:12.761614: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:12.761919: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:12.790327: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:13.05166: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:13.127147: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:13.127626: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:13.203038: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:13.752944: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:13.757913: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:14.070259: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:14.070556: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:14.227887: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:14.268494: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:14.348271: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:14.348734: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:14.379996: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:14.498766: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:14.499921: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:14.779763: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:14.78008: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:14.805342: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:14.864378: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:14.946952: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:14.947498: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:14.992708: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:15.11399: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:15.115114: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:15.277362: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:15.277682: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:15.28456: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:15.334368: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:15.440948: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:15.441416: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:15.502847: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:15.61586: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:15.636798: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:15.777889: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:15.778195: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:15.802405: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:15.85099: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:15.957092: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:15.957528: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:16.00103: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:16.108272: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:16.10947: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:16.271792: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:16.272101: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:16.279605: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:16.329507: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:16.407194: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-04 01:33:16.421796: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:16.45136: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:16.56408: embedding > test_pipeop_isomap.R: 2026-02-04 01:33:16.565256: DONE > test_pipeop_isomap.R: 2026-02-04 01:33:16.734845: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:16.735161: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:16.78331: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:16.837122: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:17.015735: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:17.016035: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:17.036054: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:17.093178: Classical Scaling > test_pipeop_isomap.R: 2026-02-04 01:33:17.148291: Isomap START > test_pipeop_isomap.R: 2026-02-04 01:33:17.148623: constructing knn graph > test_pipeop_isomap.R: 2026-02-04 01:33:17.155431: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-04 01:33:17.211516: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64

Version: 0.10.0
Check: tests
Result: ERROR Running 'testthat.R' [290s] Running the tests in 'tests/testthat.R' failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes. > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1) > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_PipeOp.R: Training test_autotrain > test_PipeOp.R: Predicting test_autotrain > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. Saving _problems/test_filter_ensemble-294.R Saving _problems/test_filter_ensemble-307.R > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated. > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead. > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated"). > test_multiplicities.R: > test_multiplicities.R: > test_multiplicities.R: [[1]] > test_multiplicities.R: [1] 0 > test_multiplicities.R: > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done" Saving _problems/test_pipeop_datefeatures-7.R Saving _problems/test_pipeop_datefeatures-17.R > test_pipeop_isomap.R: 2026-02-02 18:20:45.64582: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:45.646715: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:45.666308: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:45.69165: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:45.776208: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:45.776847: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:45.788593: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:45.812705: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:45.86572: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:45.86682: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:45.90679: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:45.953691: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:45.955383: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:45.995957: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:45.996575: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:46.014663: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:46.064058: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:46.066533: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:46.202191: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:46.202831: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:46.23373: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:46.351303: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:46.409841: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:46.410738: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:46.462211: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:46.775262: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:46.781839: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:47.01977: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:47.020393: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:47.030535: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:47.052698: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:47.10506: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:47.105922: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:47.145216: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:47.195401: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:47.19721: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:47.408832: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:47.409563: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:47.420283: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:47.435212: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:47.498841: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:47.499476: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:47.531241: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:47.568698: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:47.569869: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:47.674924: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:47.67566: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:47.686429: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:47.708877: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:47.79501: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:47.796005: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:47.820068: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:47.873638: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:48.35774: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:48.493555: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:48.494069: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:48.501242: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:48.516649: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:48.577365: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:48.578101: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:48.595811: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:48.64719: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:48.648827: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:48.779485: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:48.780222: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:48.792399: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:48.815085: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:48.893156: L-Isomap embed START > test_pipeop_isomap.R: 2026-02-02 18:20:48.894027: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:48.913458: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:48.970839: embedding > test_pipeop_isomap.R: 2026-02-02 18:20:48.97284: DONE > test_pipeop_isomap.R: 2026-02-02 18:20:49.117957: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:49.118582: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:49.130381: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:49.153134: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:49.263208: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:49.263683: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:49.272997: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:49.295783: Classical Scaling > test_pipeop_isomap.R: 2026-02-02 18:20:49.335262: Isomap START > test_pipeop_isomap.R: 2026-02-02 18:20:49.335931: constructing knn graph > test_pipeop_isomap.R: 2026-02-02 18:20:49.368668: calculating geodesic distances > test_pipeop_isomap.R: 2026-02-02 18:20:49.391091: Classical Scaling Saving _problems/test_pipeop_nmf-45.R Saving _problems/test_pipeop_nmf-73.R Saving _problems/test_pipeop_nmf-93.R Saving _problems/test_pipeop_nmf-98.R > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_task_preproc.R: Training debug_affectcols > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead. [ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3', 'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1278:3' • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ── Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE. Differences: `actual` is a character vector ('Mean relative difference: 0.400645') `expected` is a logical vector (TRUE) Backtrace: ▆ 1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3 2. └─testthat::expect_true(...) ── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ── Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified Backtrace: ▆ 1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3 2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L) ── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ── Error in `detach(package:generics)`: invalid 'name' argument Backtrace: ▆ 1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3 ── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ── Error in `FUN(X[[i]], ...)`: invalid 'name' argument This happened in PipeOp nmf's $train() Backtrace: ▆ 1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3 2. │ └─mlr3pipelines:::.__PipeOp__train(...) 3. │ ├─base::withCallingHandlers(...) 4. │ └─private$.train(input) 5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...) 6. │ └─private$.train_task(intask) 7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...) 8. │ ├─data.table::as.data.table(...) 9. │ └─private$.train_dt(dt, task$levels(cols), task$truth()) 10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...) 11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE) 12. │ └─base::lapply(.x, .f, ...) 13. │ └─base (local) FUN(X[[i]], ...) 14. │ └─base::stop("invalid 'name' argument") 15. └─base::.handleSimpleError(...) 16. └─mlr3pipelines (local) h(simpleError(msg, call)) [ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64