CRAN Package Check Results for Maintainer ‘Sean Wen <sean.wenwx at gmail.com>’

Last updated on 2025-03-12 08:53:36 CET.

Package ERROR NOTE OK
MARVEL 1 5 9
VALERIE 6 9

Package MARVEL

Current CRAN status: ERROR: 1, NOTE: 5, OK: 9

Additional issues

noSuggests

Version: 1.4.0
Check: examples
Result: ERROR Running examples in ‘MARVEL-Ex.R’ failed The error most likely occurred in: > ### Name: RunPCA.Exp > ### Title: Principle component analysis for gene Data > ### Aliases: RunPCA.Exp > > ### ** Examples > > marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL")) > > # Define genes for analysis > gene_ids <- marvel.demo$Exp$gene_id > > # PCA > marvel.demo <- RunPCA.Exp(MarvelObject=marvel.demo, + sample.ids=marvel.demo$SplicePheno$sample.id, + cell.group.column="cell.type", + cell.group.order=c("iPSC", "Endoderm"), + min.cells=5, + features=gene_ids, + point.size=2 + ) Error in loadNamespace(x) : there is no package called ‘FactoMineR’ Calls: RunPCA.Exp ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-devel-macos-x86_64

Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘MARVEL.Rmd’ using rmarkdown Quitting from lines 60-71 [unnamed-chunk-4] (MARVEL.Rmd) Error: processing vignette 'MARVEL.Rmd' failed with diagnostics: there is no package called 'FactoMineR' --- failed re-building ‘MARVEL.Rmd’ SUMMARY: processing the following file failed: ‘MARVEL.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-macos-x86_64

Version: 1.4.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.NCBI.GRCh38', 'org.Mm.eg.db', 'wiggleplotr' Flavors: r-release-macos-arm64, r-oldrel-macos-x86_64

Version: 1.4.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.NCBI.GRCh38', 'wiggleplotr' Flavor: r-release-macos-x86_64

Version: 1.4.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.NCBI.GRCh38', 'clusterProfiler', 'org.Mm.eg.db', 'wiggleplotr' Flavor: r-oldrel-macos-arm64

Version: 1.4.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: 'BSgenome.Hsapiens.NCBI.GRCh38' Flavor: r-oldrel-windows-x86_64

Package VALERIE

Current CRAN status: NOTE: 6, OK: 9

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 9.4Mb sub-directories of 1Mb or more: extdata 8.7Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64