CRAN Package Check Results for Maintainer ‘Tobias Schmidt <tobias.schmidt331 at gmail.com>’

Last updated on 2026-02-02 09:51:35 CET.

Package ERROR NOTE OK
FastRet 13
metabodecon 1 2 10
toscmask 13
toscutil 13

Package FastRet

Current CRAN status: OK: 13

Package metabodecon

Current CRAN status: ERROR: 1, NOTE: 2, OK: 10

Version: 1.6.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘mdrb’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.6.2
Check: tests
Result: ERROR Running 'testthat.R' [16s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(metabodecon) > > test_check("metabodecon") Starting 2 test processes. > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.39 Starting deconvolution of 1 spectrum using 1 worker > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.39 Starting deconvolution of sap_01 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.39 Removing water signal > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.39 Removing negative signals > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.39 Smoothing signals > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 Starting peak selection > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 Detected 24 peaks > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 > test-generate_lorentz_curves.R: Detected 24 peaks > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 Removing peaks with low scores > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 Removed 20 peaks > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 Initializing Lorentz curves > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.40 MSE at peak tiplet positions: 0.0000023352180995647374 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.41 Refining Lorentz Curves > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.41 MSE at peak tiplet positions: 0.0000000822818617368644 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.42 MSE at peak tiplet positions: 0.0000000163050712082373 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.42 MSE at peak tiplet positions: 0.0000000069366441759494 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.43 Formatting return object as decon1 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.43 Finished deconvolution of sap_01 > test-generate_lorentz_curves.R: 2026-01-31 10:55:23.44 Finished deconvolution of 1 spectrum in 0.045 secs > test-as_decon.R: 2026-01-31 10:55:25.41 Starting deconvolution of sap_01 > test-as_decon.R: 2026-01-31 10:55:25.41 > test-as_decon.R: Removing water signal > test-as_decon.R: 2026-01-31 10:55:25.41 Removing negative signals > test-as_decon.R: 2026-01-31 10:55:25.41 Smoothing signals > test-as_decon.R: 2026-01-31 10:55:25.41 Starting peak selection > test-as_decon.R: 2026-01-31 10:55:25.41 Detected 18 peaks > test-as_decon.R: 2026-01-31 10:55:25.41 Detected 18 peaks > test-as_decon.R: 2026-01-31 10:55:25.41 Removing peaks with low scores > test-as_decon.R: 2026-01-31 10:55:25.41 Removed 14 peaks > test-as_decon.R: 2026-01-31 10:55:25.41 Initializing Lorentz curves > test-as_decon.R: 2026-01-31 10:55:25.41 MSE at peak tiplet positions: 0.0000024963648931653171 > test-as_decon.R: 2026-01-31 10:55:25.42 Refining Lorentz Curves > test-as_decon.R: 2026-01-31 10:55:25.42 MSE at peak tiplet positions: 0.0000001165616696457336 > test-as_decon.R: 2026-01-31 10:55:25.42 MSE at peak tiplet positions: 0.0000000180892220732881 > test-as_decon.R: 2026-01-31 10:55:25.43 MSE at peak tiplet positions: 0.0000000055685735596686 > test-as_decon.R: 2026-01-31 10:55:25.43 Formatting return object as idecon > test-as_decon.R: 2026-01-31 10:55:25.43 Finished deconvolution of sap_01 > test-as_decon.R: 2026-01-31 10:55:25.43 > test-as_decon.R: Starting deconvolution of sap_01 using Rust backend > test-deconvolute.R: 2026-01-31 10:55:26.33 Starting deconvolution of 1 spectrum using 1 worker > test-deconvolute.R: 2026-01-31 10:55:26.33 Starting deconvolution of sap_01 > test-deconvolute.R: 2026-01-31 10:55:26.33 > test-deconvolute.R: Removing water signal > test-deconvolute.R: 2026-01-31 10:55:26.33 Removing negative signals > test-deconvolute.R: 2026-01-31 10:55:26.33 Smoothing signals > test-deconvolute.R: 2026-01-31 10:55:26.34 Starting peak selection > test-deconvolute.R: 2026-01-31 10:55:26.34 Detected 24 peaks > test-deconvolute.R: 2026-01-31 10:55:26.34 Detected 24 peaks > test-deconvolute.R: 2026-01-31 10:55:26.34 Removing peaks with low scores > test-deconvolute.R: 2026-01-31 10:55:26.34 Removed 20 peaks > test-deconvolute.R: 2026-01-31 10:55:26.34 Initializing Lorentz curves > test-deconvolute.R: 2026-01-31 10:55:26.34 MSE at peak tiplet positions: 0.0000023352180995647374 > test-deconvolute.R: 2026-01-31 10:55:26.34 Refining Lorentz Curves > test-deconvolute.R: 2026-01-31 10:55:26.35 MSE at peak tiplet positions: 0.0000000822818617368644 > test-deconvolute.R: 2026-01-31 10:55:26.35 MSE at peak tiplet positions: 0.0000000163050712082373 > test-deconvolute.R: 2026-01-31 10:55:26.36 MSE at peak tiplet positions: 0.0000000069366441759494 > test-deconvolute.R: 2026-01-31 10:55:26.36 Formatting return object as decon2 > test-deconvolute.R: 2026-01-31 10:55:26.37 Finished deconvolution of sap_01 > test-deconvolute.R: 2026-01-31 10:55:26.37 Finished deconvolution of 1 spectrum in 0.033 secs > test-deconvolute.R: 2026-01-31 10:55:26.42 Starting deconvolution of 2 spectra using 1 worker > test-deconvolute.R: 2026-01-31 10:55:26.42 Starting deconvolution of sim_01 > test-deconvolute.R: 2026-01-31 10:55:26.42 Removing water signal > test-deconvolute.R: 2026-01-31 10:55:26.42 Removing negative signals > test-deconvolute.R: 2026-01-31 10:55:26.42 > test-deconvolute.R: Smoothing signals > test-deconvolute.R: 2026-01-31 10:55:26.44 Starting peak selection > test-deconvolute.R: 2026-01-31 10:55:26.44 Detected 314 peaks > test-deconvolute.R: 2026-01-31 10:55:26.44 > test-deconvolute.R: Detected 314 peaks > test-deconvolute.R: 2026-01-31 10:55:26.44 Removing peaks with low scores > test-deconvolute.R: 2026-01-31 10:55:26.44 Removed 287 peaks > test-deconvolute.R: 2026-01-31 10:55:26.44 Initializing Lorentz curves > test-deconvolute.R: 2026-01-31 10:55:26.44 MSE at peak tiplet positions: 4.0838805770844048836921 > test-deconvolute.R: 2026-01-31 10:55:26.45 Refining Lorentz Curves > test-deconvolute.R: 2026-01-31 10:55:26.45 MSE at peak tiplet positions: 0.1609359876216345797140 > test-deconvolute.R: 2026-01-31 10:55:26.46 MSE at peak tiplet positions: 0.0228015051613790313556 > test-deconvolute.R: 2026-01-31 10:55:26.46 MSE at peak tiplet positions: 0.0071638016610617799920 > test-deconvolute.R: 2026-01-31 10:55:26.47 Formatting return object as decon2 > test-deconvolute.R: 2026-01-31 10:55:26.48 Finished deconvolution of sim_01 > test-deconvolute.R: 2026-01-31 10:55:26.48 Starting deconvolution of sim_02 > test-deconvolute.R: 2026-01-31 10:55:26.48 Removing water signal > test-deconvolute.R: 2026-01-31 10:55:26.48 Removing negative signals > test-deconvolute.R: 2026-01-31 10:55:26.48 Smoothing signals > test-deconvolute.R: 2026-01-31 10:55:26.50 Starting peak selection > test-deconvolute.R: 2026-01-31 10:55:26.50 Detected 316 peaks > test-deconvolute.R: 2026-01-31 10:55:26.50 Detected 316 peaks > test-deconvolute.R: 2026-01-31 10:55:26.50 Removing peaks with low scores > test-deconvolute.R: 2026-01-31 10:55:26.50 Removed 286 peaks > test-deconvolute.R: 2026-01-31 10:55:26.50 Initializing Lorentz curves > test-deconvolute.R: 2026-01-31 10:55:26.50 MSE at peak tiplet positions: 3.8338943428876719465848 > test-deconvolute.R: 2026-01-31 10:55:26.50 Refining Lorentz Curves > test-deconvolute.R: 2026-01-31 10:55:26.51 MSE at peak tiplet positions: 0.1289481941626757499630 > test-deconvolute.R: 2026-01-31 10:55:26.52 MSE at peak tiplet positions: 0.0135651899090413786964 > test-deconvolute.R: 2026-01-31 10:55:26.53 MSE at peak tiplet positions: 0.0025556755331531087749 > test-deconvolute.R: 2026-01-31 10:55:26.53 Formatting return object as decon2 > test-deconvolute.R: 2026-01-31 10:55:26.55 Finished deconvolution of sim_02 > test-deconvolute.R: 2026-01-31 10:55:26.55 Finished deconvolution of 2 spectra in 0.13 secs > test-deconvolute.R: 2026-01-31 10:55:26.63 Starting deconvolution of 1 spectrum using 1 worker > test-deconvolute.R: 2026-01-31 10:55:26.63 > test-deconvolute.R: Starting deconvolution of sim_00 > test-deconvolute.R: 2026-01-31 10:55:26.63 Removing water signal > test-deconvolute.R: 2026-01-31 10:55:26.63 Removing negative signals > test-deconvolute.R: 2026-01-31 10:55:26.63 Smoothing signals > test-deconvolute.R: 2026-01-31 10:55:26.63 Starting peak selection > test-deconvolute.R: 2026-01-31 10:55:26.64 Detected 63 peaks > test-deconvolute.R: 2026-01-31 10:55:26.64 Detected 63 peaks > test-deconvolute.R: 2026-01-31 10:55:26.64 Removing peaks with low scores > test-deconvolute.R: 2026-01-31 10:55:26.66 Starting deconvolution of 1 spectrum using 1 worker > test-deconvolute.R: 2026-01-31 10:55:26.66 Starting deconvolution of sim_00 > test-deconvolute.R: 2026-01-31 10:55:26.66 Removing water signal > test-deconvolute.R: 2026-01-31 10:55:26.66 Removing negative signals > test-deconvolute.R: 2026-01-31 10:55:26.66 Smoothing signals > test-deconvolute.R: 2026-01-31 10:55:26.66 Starting peak selection > test-deconvolute.R: 2026-01-31 10:55:26.66 Detected 63 peaks > test-deconvolute.R: 2026-01-31 10:55:26.66 Detected 63 peaks > test-deconvolute.R: 2026-01-31 10:55:26.66 Removing peaks with low scores > test-deconvolute.R: 2026-01-31 10:55:26.66 Not enough signals found in signal free region. This is a clear indication that the deconvolution parameters are not set correctly. Continuing anyways without dynamic peak filtering, because `force` is TRUE. Note that this might increase runtime drastically. > test-deconvolute.R: 2026-01-31 10:55:26.66 Removed 0 peaks > test-deconvolute.R: 2026-01-31 10:55:26.66 Initializing Lorentz curves > test-deconvolute.R: 2026-01-31 10:55:26.66 MSE at peak tiplet positions: 1.2776621160691834511169 > test-deconvolute.R: 2026-01-31 10:55:26.67 Refining Lorentz Curves > test-deconvolute.R: 2026-01-31 10:55:26.67 MSE at peak tiplet positions: 0.0382680161940291627132 > test-deconvolute.R: 2026-01-31 10:55:26.69 MSE at peak tiplet positions: 0.0106273721357571498264 > test-deconvolute.R: 2026-01-31 10:55:26.70 MSE at peak tiplet positions: 0.0050118558740662863191 > test-deconvolute.R: 2026-01-31 10:55:26.70 Formatting return object as decon2 > test-deconvolute.R: 2026-01-31 10:55:26.71 Finished deconvolution of sim_00 > test-deconvolute.R: 2026-01-31 10:55:26.71 Finished deconvolution of 1 spectrum in 0.052 secs > test-find_peaks_fast2.R: 2026-01-31 10:55:27.83 Starting peak selection > test-find_peaks_fast2.R: 2026-01-31 10:55:27.83 Detected 3 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.39 Starting deconvolution of 2 spectra using 1 worker > test-get_si_mat.R: 2026-01-31 10:55:28.39 Starting deconvolution of sim_01 > test-get_si_mat.R: 2026-01-31 10:55:28.39 Removing water signal > test-get_si_mat.R: 2026-01-31 10:55:28.39 Removing negative signals > test-get_si_mat.R: 2026-01-31 10:55:28.39 Smoothing signals > test-get_si_mat.R: 2026-01-31 10:55:28.41 Starting peak selection > test-get_si_mat.R: 2026-01-31 10:55:28.41 Detected 314 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.41 > test-get_si_mat.R: Detected 314 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.41 Removing peaks with low scores > test-get_si_mat.R: 2026-01-31 10:55:28.41 Removed 287 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.41 Initializing Lorentz curves > test-get_si_mat.R: 2026-01-31 10:55:28.41 MSE at peak tiplet positions: 4.0838805770844048836921 > test-get_si_mat.R: 2026-01-31 10:55:28.41 Refining Lorentz Curves > test-get_si_mat.R: 2026-01-31 10:55:28.42 MSE at peak tiplet positions: 0.1609359876216345797140 > test-get_si_mat.R: 2026-01-31 10:55:28.43 MSE at peak tiplet positions: 0.0228015051613790313556 > test-get_si_mat.R: 2026-01-31 10:55:28.43 MSE at peak tiplet positions: 0.0071638016610617799920 > test-get_si_mat.R: 2026-01-31 10:55:28.44 Formatting return object as decon2 > test-get_si_mat.R: 2026-01-31 10:55:28.45 Finished deconvolution of sim_01 > test-get_si_mat.R: 2026-01-31 10:55:28.45 Starting deconvolution of sim_02 > test-get_si_mat.R: 2026-01-31 10:55:28.45 Removing water signal > test-get_si_mat.R: 2026-01-31 10:55:28.45 Removing negative signals > test-get_si_mat.R: 2026-01-31 10:55:28.45 Smoothing signals > test-get_si_mat.R: 2026-01-31 10:55:28.47 Starting peak selection > test-get_si_mat.R: 2026-01-31 10:55:28.47 Detected 316 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.47 > test-get_si_mat.R: Detected 316 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.47 Removing peaks with low scores > test-get_si_mat.R: 2026-01-31 10:55:28.47 Removed 286 peaks > test-get_si_mat.R: 2026-01-31 10:55:28.47 Initializing Lorentz curves > test-get_si_mat.R: 2026-01-31 10:55:28.47 MSE at peak tiplet positions: 3.8338943428876719465848 > test-get_si_mat.R: 2026-01-31 10:55:28.48 Refining Lorentz Curves > test-get_si_mat.R: 2026-01-31 10:55:28.48 MSE at peak tiplet positions: 0.1289481941626757499630 > test-get_si_mat.R: 2026-01-31 10:55:28.49 MSE at peak tiplet positions: 0.0135651899090413786964 > test-get_si_mat.R: 2026-01-31 10:55:28.50 MSE at peak tiplet positions: 0.0025556755331531087749 > test-get_si_mat.R: 2026-01-31 10:55:28.50 Formatting return object as decon2 > test-get_si_mat.R: 2026-01-31 10:55:28.51 Finished deconvolution of sim_02 > test-get_si_mat.R: 2026-01-31 10:55:28.51 Finished deconvolution of 2 spectra in 0.125 secs > test-get_si_mat.R: 2026-01-31 10:55:28.51 All requested packages are already installed. > test-get_si_mat.R: > test-get_si_mat.R: > test-get_si_mat.R: -------------------------------- > test-get_si_mat.R: dohCluster will run with maxShift= 50 > test-get_si_mat.R: If you want dohCluster to detect the optimal maxShift automatically, > test-get_si_mat.R: use dohCluster(..., maxShift = NULL, ...) > test-get_si_mat.R: -------------------------------- > test-get_si_mat.R: > test-get_si_mat.R: aligning spectrum 1 > test-get_si_mat.R: > test-get_si_mat.R: Median pearson correlation of aligned spectra: > test-get_si_mat.R: 0.9976321 > test-get_si_mat.R: Alignment time: 5e-04 minutes > test-read_decon_params.R: Error: ! testthat subprocess exited in file 'test-read_decon_params.R'. Caused by error: ! R session crashed with exit code -1073741819 Backtrace: ▆ 1. └─testthat::test_check("metabodecon") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─cli::cli_abort(...) 18. └─rlang::abort(...) Execution halted Flavor: r-oldrel-windows-x86_64

Package toscmask

Current CRAN status: OK: 13

Package toscutil

Current CRAN status: OK: 13