AiES: Axon Integrity Evaluation System for Microscopy Images
Provides tools for the quantitative analysis of axon integrity
in phase-contrast microscopy images. 'AiES' (Axon integrity Evaluation
System) implements image pre-processing, adaptive thresholding, feature
extraction, and support vector machine-based classification to compute
indices such as the Axon Integrity Index (AII) and Degeneration Index
(DI). Two built-in models are provided, and classifiers can be re-trained
on user data. The package is designed for reproducible and automated
analysis in neuroscience research.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.6.0) |
| Imports: |
EBImage, e1071, stats, fs, utils, data.table, rstudioapi, tiff |
| Suggests: |
knitr, rmarkdown, tcltk, svDialogs |
| Published: |
2026-11-02 |
| DOI: |
10.32614/CRAN.package.AiES |
| Author: |
Shinji Tokunaga 
[aut, cre],
Masabumi Funakoshi [ctb],
Toshiyuki Araki
[ctb],
National Center of Neurology and Psychiatry [cph] |
| Maintainer: |
Shinji Tokunaga <tokunaga at ncnp.go.jp> |
| BugReports: |
https://github.com/BreezyCave/AiES/issues |
| License: |
BSD_3_clause + file LICENSE |
| Copyright: |
2025 National Center of Neurology and Psychiatry |
| URL: |
https://github.com/BreezyCave/AiES |
| NeedsCompilation: |
no |
| Citation: |
AiES citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
AiES results |
Documentation:
Downloads:
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