FN Thomson Reuters Web of Science™
VR 1.0
PT J
AU Grey, TL
Webster, TM
AF Grey, Timothy L.
Webster, Theodore M.
BE Russo, VM
TI Transplant Production
SO PEPPERS: BOTANY, PRODUCTION AND USES
LA English
DT Article; Book Chapter
ID CAPSICUM-ANNUUM-L; PEPPER SEED LOTS; BELL PEPPER; CELL-SIZE; GROWTH;
GERMINATION; QUALITY; YIELD; SEEDLINGS; PLANTS
C1 [Grey, Timothy L.] Univ Georgia, Coll Agr & Environm Sci, Dept Crops & Soil Sci, Tifton, GA 31794 USA.
[Webster, Theodore M.] ARS, Crop Protect & Management Res Unit, USDA, Tifton, GA 31793 USA.
RP Grey, TL (reprint author), Univ Georgia, Coll Agr & Environm Sci, Dept Crops & Soil Sci, Tifton Campus,115 Coastal Way, Tifton, GA 31794 USA.
RI Webster, Theodore/A-4468-2009
OI Webster, Theodore/0000-0002-8259-2059
NR 44
TC 0
Z9 0
U1 0
U2 3
PU CABI PUBLISHING-C A B INT
PI WALLINGFORD
PA CABI PUBLISHING, WALLINGFORD 0X10 8DE, OXON, ENGLAND
BN 978-1-84593-767-6
PY 2012
BP 87
EP 99
D2 10.1079/9781845937676.0000
PG 13
WC Agronomy
SC Agriculture
GA BDE60
UT WOS:000312955000007
ER
PT J
AU Webber, CL
AF Webber, Charles L., III
BE Russo, VM
TI Weed Control
SO PEPPERS: BOTANY, PRODUCTION AND USES
LA English
DT Article; Book Chapter
ID SOYBEAN GLYCINE-MAX; PIGWEED AMARANTHUS-RETROFLEXUS; COTTON
GOSSYPIUM-HIRSUTUM; CLAY SOIL; EMERGENCE; MULCHES; SEEDS; CORN;
INTERFERENCE; GERMINATION
C1 ARS, USDA, Wes Watkins Agr Res Lab, Lane, OK 74555 USA.
RP Webber, CL (reprint author), ARS, USDA, Wes Watkins Agr Res Lab, 911 Hwy 3W,POB 159, Lane, OK 74555 USA.
NR 42
TC 0
Z9 0
U1 0
U2 2
PU CABI PUBLISHING-C A B INT
PI WALLINGFORD
PA CABI PUBLISHING, WALLINGFORD 0X10 8DE, OXON, ENGLAND
BN 978-1-84593-767-6
PY 2012
BP 189
EP 202
D2 10.1079/9781845937676.0000
PG 14
WC Agronomy
SC Agriculture
GA BDE60
UT WOS:000312955000015
ER
PT J
AU Funk, PA
Marshall, DE
AF Funk, Paul A.
Marshall, Dale E.
BE Russo, VM
TI Pepper Harvest Technology
SO PEPPERS: BOTANY, PRODUCTION AND USES
LA English
DT Article; Book Chapter
ID CHILI PEPPERS; MECHANISM
C1 [Funk, Paul A.] ARS, USDA, SW Cotton Ginning Res Lab, Mesilla Pk, NM 88047 USA.
RP Funk, PA (reprint author), ARS, USDA, SW Cotton Ginning Res Lab, 300 E Coll Dr,POB 578, Mesilla Pk, NM 88047 USA.
NR 54
TC 3
Z9 3
U1 0
U2 0
PU CABI PUBLISHING-C A B INT
PI WALLINGFORD
PA CABI PUBLISHING, WALLINGFORD 0X10 8DE, OXON, ENGLAND
BN 978-1-84593-767-6
PY 2012
BP 227
EP 240
D2 10.1079/9781845937676.0000
PG 14
WC Agronomy
SC Agriculture
GA BDE60
UT WOS:000312955000018
ER
PT J
AU Gusta, LV
Wisniewski, M
AF Gusta, Lawrence V.
Wisniewski, Michael
BE Shabala, S
TI Frost Tolerance in Plants
SO PLANT STRESS PHYSIOLOGY
LA English
DT Article; Book Chapter
ID INFRARED VIDEO THERMOGRAPHY; COLD-ACCLIMATION; LOW-TEMPERATURE; FREEZING
TOLERANCE; ICE NUCLEATION; GENE-EXPRESSION; WINTER-WHEAT;
TRANSCRIPTIONAL ACTIVATOR; ARABIDOPSIS-THALIANA; ANTIFREEZE PROTEINS
AB Understanding and improving the cold hardiness of plants has been an endeavour that has been pursued since the onset of studying plant biology. Advances in biotechnology have allowed us to move beyond structure and physiology to identifying and understanding the role of specific genes and proteins. Most recently we have moved into the era of 'omics', where the entire transcriptome, proteome and metabolome can be assessed and integrated to gain a holistic picture of plant metabolism. This approach is known as systems biology. The present chapter discusses these latest advances in biotechnology but emphasizes that essential to the beneficial use of modern biotechnology is a solid understanding of plant biology in relation to cold hardiness. The process of cold acclimation, types of freezing injury and the role of plant structure in the freezing response are discussed. Additionally, the importance of 'realistic' protocols for acclimating plants and assessing cold hardiness are emphasized, as well as the important role of photosynthesis and sugars in cold acclimation. The use of plant biotechnology grounded in an understanding of plant biology has great potential for increasing plant productivity in a rapidly changing climate.
C1 [Gusta, Lawrence V.] Univ Saskatchewan, Saskatoon, SK S7N 5A8, Canada.
[Wisniewski, Michael] USDA ARS, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
RP Gusta, LV (reprint author), Univ Saskatchewan, 51 Campus Dr, Saskatoon, SK S7N 5A8, Canada.
EM larry.gusta@usask.ca; Michael.Wisniewski@ars.usda.gov
NR 76
TC 2
Z9 2
U1 5
U2 23
PU CABI PUBLISHING-C A B INT
PI WALLINGFORD
PA CABI PUBLISHING, WALLINGFORD 0X10 8DE, OXON, ENGLAND
BN 978-1-84593-995-3
PY 2012
BP 132
EP 147
D2 10.1079/9781845939953.0000
PG 16
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA BDE17
UT WOS:000312933900007
ER
PT J
AU Cavatorta, JR
Gray, SM
Jahn, MM
AF Cavatorta, Jason R.
Gray, Stewart M.
Jahn, Molly M.
BE Popp, JS
Jahn, MM
Matlock, MD
Kemper, NP
TI Biotechnology and the Control of Viral Diseases of Crops
SO ROLE OF BIOTECHNOLOGY IN A SUSTAINABLE FOOD SUPPLY
LA English
DT Article; Book Chapter
ID RESISTANT TRANSGENIC PLANTS; LONG-DISTANCE MOVEMENT;
PAPAYA-RINGSPOT-VIRUS; TOBACCO-MOSAIC-VIRUS; RECESSIVE RESISTANCE;
INITIATION-FACTORS; POTYVIRUS RESISTANCE; INSECTICIDAL CONTROL;
RISK-ASSESSMENT; MESSENGER-RNA
C1 [Cavatorta, Jason R.] Monsanto Co, Vegetable Seeds Div, Woodland, CA USA.
[Gray, Stewart M.] Cornell Univ, USDA ARS, Ithaca, NY 14853 USA.
[Gray, Stewart M.] Cornell Univ, Dept Plant Pathol & Plant Microbe Biol, Ithaca, NY USA.
[Jahn, Molly M.] Univ Wisconsin, Madison, WI USA.
RP Cavatorta, JR (reprint author), Monsanto Co, Vegetable Seeds Div, Woodland, CA USA.
RI Jahn, Molly /G-6133-2015
OI Jahn, Molly /0000-0001-8319-3300
NR 75
TC 0
Z9 0
U1 0
U2 5
PU CAMBRIDGE UNIV PRESS
PI CAMBRIDGE
PA THE PITT BUILDING, TRUMPINGTON ST, CAMBRIDGE CB2 1RP, CAMBS, ENGLAND
BN 978-0-521-19234-7
PY 2012
BP 77
EP 89
D2 10.1017/CBO9781139026710
PG 13
WC Biotechnology & Applied Microbiology; Plant Sciences
SC Biotechnology & Applied Microbiology; Plant Sciences
GA BDG40
UT WOS:000313116700006
ER
PT J
AU Bussan, AJ
Knuteson, D
Colquhoun, J
Binning, L
Jansky, S
Jiang, JM
Mitchell, PD
Stevenson, WR
Groves, R
Wyman, J
Ruark, M
Kelling, K
AF Bussan, Alvin J.
Knuteson, Deana
Colquhoun, Jed
Binning, Larry
Jansky, Shelley
Jiang, Jiming
Mitchell, Paul D.
Stevenson, Walter R.
Groves, Russell
Wyman, Jeff
Ruark, Matt
Kelling, Keith
BE Popp, JS
Jahn, MM
Matlock, MD
Kemper, NP
TI Case Study Healthy Grown Potatoes and Sustainability of Wisconsin Potato
Production
SO ROLE OF BIOTECHNOLOGY IN A SUSTAINABLE FOOD SUPPLY
LA English
DT Article; Book Chapter
ID LATE BLIGHT RESISTANCE; HOST-PLANT RESISTANCE; VIRUS-Y; NEONICOTINOID
INSECTICIDES; TRANSGENIC POTATO; ALTERNARIA-SOLANI; GENE RB; STARCH;
FUNGICIDE; BEETLE
C1 [Bussan, Alvin J.; Knuteson, Deana] Univ Wisconsin, Dept Hort, BioIPM Field, Madison, WI 53706 USA.
[Jansky, Shelley] Univ Wisconsin, USDA ARS, Madison, WI 53706 USA.
[Mitchell, Paul D.] Univ Wisconsin, Dept Agr & Appl Econ, Madison, WI USA.
[Stevenson, Walter R.] Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA.
[Groves, Russell; Wyman, Jeff] Univ Wisconsin, Dept Entomol, Madison, WI 53706 USA.
[Ruark, Matt; Kelling, Keith] Univ Wisconsin, Dept Soil Sci, Madison, WI 53706 USA.
RP Bussan, AJ (reprint author), Univ Wisconsin, Dept Hort, BioIPM Field, 1575 Linden Dr, Madison, WI 53706 USA.
RI Jahn, Molly /G-6133-2015
OI Jahn, Molly /0000-0001-8319-3300
NR 54
TC 1
Z9 1
U1 0
U2 3
PU CAMBRIDGE UNIV PRESS
PI CAMBRIDGE
PA THE PITT BUILDING, TRUMPINGTON ST, CAMBRIDGE CB2 1RP, CAMBS, ENGLAND
BN 978-0-521-19234-7
PY 2012
BP 192
EP 211
D2 10.1017/CBO9781139026710
PG 20
WC Biotechnology & Applied Microbiology; Plant Sciences
SC Biotechnology & Applied Microbiology; Plant Sciences
GA BDG40
UT WOS:000313116700012
ER
PT J
AU Nowak, DJ
AF Nowak, David J.
TI Contrasting natural regeneration and tree planting in fourteen North
American cities
SO URBAN FORESTRY & URBAN GREENING
LA English
DT Article
DE Forest monitoring; Invasive species; Rhamnus cathartica; Tree cover
goals; Urban forestry; Urban sustainability; Urban trees
ID ECOSYSTEM SERVICES; URBAN; FORESTS; COVER
AB Field data from randomly located plots in 12 cities in the United States and Canada were used to estimate the proportion of the existing tree population that was planted or occurred via natural regeneration. In addition, two cities (Baltimore and Syracuse) were recently re-sampled to estimate the proportion of newly established trees that were planted. Results for the existing tree populations reveal that, on average, about 1 in 3 trees are planted in cities. Land uses and tree species with the highest proportion of trees planted were residential (74.8 percent of trees planted) and commercial/industrial (61.2 percent) lands, and Gleditsia triacanthos (95.1 percent) and Pinus nigra (91.8 percent). The percentage of the tree population planted is greater in cities developed in grassland areas as compared to cities developed in forests and tends to increase with increased population density and percent impervious cover in cities. New tree influx rates ranged from 4.0 trees/ha/yr in Baltimore to 8.6 trees/ha/yr in Syracuse. About 1 in 20 trees (Baltimore) and 1 in 12 trees (Syracuse) were planted in newly established tree populations. In Syracuse, the recent tree influx has been dominated by Rhamnus cathartica, an exotic invasive species. Without tree planting and management, the urban forest composition in some cities will likely shift to more pioneer or invasive tree species in the near term. As these species typically are smaller and have shorter life-spans, the ability of city systems to sustain more large, long-lived tree species may require human intervention through tree planting and maintenance. Data on tree regeneration and planting proportions and rates can be used to help determine tree planting rates necessary to attain desired tree cover and species composition goals. Published by Elsevier GmbH.
C1 SUNY ESF, USDA Forest Serv, No Res Stn, Moon Lib 5, Syracuse, NY 13210 USA.
RP Nowak, DJ (reprint author), SUNY ESF, USDA Forest Serv, No Res Stn, Moon Lib 5, Syracuse, NY 13210 USA.
EM dnowak@fs.fed.us
FU National Science Foundation (NSF) through the Baltimore Ecosystem
Study-Long Term Ecological Research Project (BES-LTER) [DEB-0423476,
BCS-0948952]; Syracuse Urban Long-Term Research Area Exploratory Award
(ULTRA-Ex); Toronto and Region Conservation Authority; City of Toronto;
City of London, Ontario
FX Funding for this project was provided, in part, by the National Science
Foundation (NSF grants DEB-0423476 and BCS-0948952) through the
Baltimore Ecosystem Study-Long Term Ecological Research Project
(BES-LTER), the Syracuse Urban Long-Term Research Area Exploratory Award
(ULTRA-Ex) and funding from the Toronto and Region Conservation
Authority and the Cities of Toronto and London, Ontario. Special thanks
go to Aaron Durnbaugh, Cherie LeBlanc-Fisher (Chicago), Ivan Lister
(London), Rike Burhardt, Ruthanne Henry (Toronto), Lionel Normand,
Meaghan Eastwood (Toronto suburbs), Chris Donnelly (Hartford), Lorraine
Weller, Antonio Davila, Nancy Grulke, George Gonzalez, Darrel Jenerette
(Los Angeles) and Ken Belt and Ian Yesilonis (Baltimore) for their
assistance and support with these city analyses. Thanks also to the
numerous city departments and field data collectors involved with these
city assessments, and to Robert Hoehn, Jack Stevens, Allison Bodine and
Mike Boarman for assistance with data collection and analyses, John
Stanovick for his statistical assistance and review, and Will McWilliams
and Myrna Hall for their comments on a draft manuscript.
NR 32
TC 21
Z9 21
U1 4
U2 42
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1618-8667
J9 URBAN FOR URBAN GREE
JI Urban For. Urban Green.
PY 2012
VL 11
IS 4
BP 374
EP 382
DI 10.1016/j.ufug.2012.02.005
PG 9
WC Plant Sciences; Environmental Studies; Forestry; Urban Studies
SC Plant Sciences; Environmental Sciences & Ecology; Forestry; Urban
Studies
GA 062LY
UT WOS:000312922500003
ER
PT J
AU Santiago-Melendez, S
Gonzalez, S
Goenaga, R
AF Santiago-Melendez, Sergio
Gonzalez, Sally
Goenaga, Ricardo
TI Evaluation of an agricultural experiment station as a case study site
for the establishment of a multi-use urban forest
SO URBAN FORESTRY & URBAN GREENING
LA English
DT Article
DE Urban forestry; Tropical Agriculture Research Station (TARS);
Environmental and cultural resource management; Puerto Rico
ID PUERTO-RICO; LAND-DEVELOPMENT; TREE SEEDLINGS; CONSEQUENCES; HURRICANES;
PASTURES; IMPACTS; GROWTH
AB In an attempt to contribute towards a more sustainable development for the island of Puerto Rico, this project focuses on the documentation and evaluation of the Tropical Agriculture Research Station (TARS) near the urban center of the city of Mayaguez, Puerto Rico as a case study site to establish a multi-use and research-oriented urban forest. This location has been used since the beginning of the 20th century as a plant introduction and evaluation site, and as an in situ germplasm collection for numerous plant species. The evaluation methods consisted of identifying unique resources within the study area and stressors which could affect the latter. Unique resources were also identified on a Preliminary Resource Inventory Map (PRIM) using GPS technology. Obtained results and observations indicate that the study area represents a major potential asset for the positive economic, social, and educational development of the Mayaguez urban area due to its unique, historic, and complex ecosystems with significant environmental and cultural resources. Of the identified stressors, urban expansion was considered as the most threatening. Hypothetical recommendations providing a base for future development and management efforts in the study area were formulated with the objective of protecting and sustainably using its resources, while promoting environmental and socioeconomic benefits in the region. (C) 2012 Elsevier GmbH. All rights reserved.
C1 [Santiago-Melendez, Sergio] Univ Hawaii Manoa, Dept Nat Resources & Environm Management, Honolulu, HI 96822 USA.
[Santiago-Melendez, Sergio] Univ Hawaii Manoa, Water Resources Res Ctr, Honolulu, HI 96822 USA.
[Gonzalez, Sally] Univ Puerto Rico, Dept Crops & Agroenvironm Sci, Mayaguez, PR 00680 USA.
[Goenaga, Ricardo] ARS, USDA, Trop Agr Res Stn, Mayaguez, PR 00680 USA.
RP Santiago-Melendez, S (reprint author), Univ Hawaii Manoa, Dept Nat Resources & Environm Management, 1910 East West Rd,Sherman 101, Honolulu, HI 96822 USA.
EM ssm2@hawaii.edu
NR 57
TC 0
Z9 0
U1 3
U2 14
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1618-8667
J9 URBAN FOR URBAN GREE
JI Urban For. Urban Green.
PY 2012
VL 11
IS 4
BP 406
EP 416
DI 10.1016/j.ufug.2012.06.005
PG 11
WC Plant Sciences; Environmental Studies; Forestry; Urban Studies
SC Plant Sciences; Environmental Sciences & Ecology; Forestry; Urban
Studies
GA 062LY
UT WOS:000312922500007
ER
PT S
AU Dossett, M
Lee, J
Finn, CE
AF Dossett, M.
Lee, Jungmin
Finn, C. E.
BE Tanovic, B
TI Anthocyanin Content of Wild Black Raspberry Germplasm
SO X INTERNATIONAL RUBUS AND RIBES SYMPOSIUM
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 10th International Rubus and Ribes Symposium
CY JUN 22-26, 2011
CL Zlatibor, SERBIA
SP Int Soc Hort Sci (ISHS), Sirogojno Co, Ploeger, Agro Market, BSK, Visys, Galenika - Fitofarmacija, Weremczuk, Syngenta, Univ Belgrade, Fac Agr, Inst Pesticide & Environm Protect
DE Rubus occidentalis; cyanidin; flavonoid; bramble; pigment
ID ANTIOXIDANT CAPACITY; CONSUMPTION
AB Because of its intense anthocyanin pigments, black raspberry (Rubus occidentalis L.) has a long history of use as a natural colorant and dye. Recent studies showing black raspberries to be a rich source of anthocyanins and other dietary phytochemicals have led to renewed interest in breeding better adapted cultivars that meet the demands of these markets. Anthocyanin content is a critical indicator of fruit quality for fresh and processed markets. Previous studies characterizing black raspberry anthocyanins have focused on existing cultivars comprising a narrow genetic base; however, progress in breeding new cultivars with better adaptability and disease resistance will rely on the use of new germplasm sources. Using high performance liquid chromatography/diode array detector/ion trap mass spectrometer, we examined anthocyanin content and profiles in the juice of fruit from black raspberry seedlings representing 78 wild populations from across the species' native range over a two year period. Anthocyanin profiles were similar to those previously reported, however total anthocyanin content varied widely. Total anthocyanins in individual clones ranged from 39 to 996 mg/100 ml (expressed as cyanidin-3-glucoside) and averaged slightly higher in 2010 than in 2009. Black raspberry cultivars fell in the middle of this range, with individual wild clones ranging from less than one fourth to nearly three times the anthocyanin concentration of the industry standard, 'Munger'. Genetic diversity for anthocyanin content is present in recently collected wild black raspberry germplasm and should be carefully evaluated when using this material for breeding improved cultivars.
C1 [Dossett, M.] Agr & Agri Food Canada, Pacific Agri Food Res Ctr, 6947 Hwy 7,P Box 1000, Agassiz, BC V0M 1A0, Canada.
[Lee, Jungmin] United States Dept Agr, Hort Crops Res Unit Worksite, Agr Res Serv, Parma, ID 83660 USA.
[Finn, C. E.] United States Dept Agr, Hort Crops Res Unit, Agr Res Serv, Corvallis, OR 97330 USA.
RP Dossett, M (reprint author), Agr & Agri Food Canada, Pacific Agri Food Res Ctr, 6947 Hwy 7,P Box 1000, Agassiz, BC V0M 1A0, Canada.
RI Lee, Jungmin/G-6555-2013
OI Lee, Jungmin/0000-0002-8660-9444
FU Northwest Center for Small Fruits Research ( NCSFR); Oregon Raspberry
and Blackberry Commission; USDA- ARS CRIS [535821000- 041- 00D, 5358-
21000- 037- 00]
FX We would like to thank the Northwest Center for Small Fruits Research (
NCSFR), the Oregon Raspberry and Blackberry Commission, USDA- ARS CRIS
numbers 535821000- 041- 00D and 5358- 21000- 037- 00D for funding as
well as Mary Peterson, Ted Mackey, Erin Ortiz, Chris Rennaker, and Brian
Yorgey for their technical assistance with this project. Mention of
trade names or commercial products in this publication is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the U. S. Department of Agriculture.
NR 11
TC 4
Z9 4
U1 0
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-08-6
J9 ACTA HORTIC
PY 2012
VL 946
BP 43
EP 47
PG 5
WC Agronomy; Horticulture
SC Agriculture
GA BDH71
UT WOS:000313283300003
ER
PT S
AU Barney, DL
Hummer, KE
Robertson, NL
Gilmore, BS
AF Barney, D. L.
Hummer, K. E.
Robertson, N. L.
Gilmore, B. S.
BE Tanovic, B
TI Ribes L. Gene Bank Management in the United States
SO X INTERNATIONAL RUBUS AND RIBES SYMPOSIUM
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 10th International Rubus and Ribes Symposium
CY JUN 22-26, 2011
CL Zlatibor, SERBIA
SP Int Soc Hort Sci (ISHS), Sirogojno Co, Ploeger, Agro Market, BSK, Visys, Galenika - Fitofarmacija, Weremczuk, Syngenta, Univ Belgrade, Fac Agr, Inst Pesticide & Environm Protect
DE currant; gooseberry; genebank; genetic resources; germplasm
ID GOOSEBERRY; PCR; NIGRUM
AB A world collection of Ribes species and cultivars is maintained by the U. S. Department of Agriculture, Agricultural Research Service, National Plant Germplasm System (NPGS). The NPGS is a cooperative effort by State, Federal, and private organizations to preserve plant genetic diversity by acquiring, preserving, evaluating, documenting, and distributing crop germplasm. The program provides scientists and breeders around the world with access to genetically diverse plant materials to help develop new cultivars that are resistant to pests, diseases, and environmental stresses. Clonal material and seeds from species and cultivars of currants and gooseberries were collected from throughout North America, Europe, Asia, and South America, in accordance with international treaty requirements. Future efforts will continue to fill genetic gaps in collections. The Ribes collection is maintained at the National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon and its worksite at the Arctic and Subarctic Plant Gene Bank (ASPGB) in Palmer, Alaska. Accessions are evaluated for climatic adaptability, growth characteristics, fruit characteristics, and disease susceptibility. Resistance to white pine blister rust (Cronartium ribicola J. C. Fisch.), powdery mildew (Podosphaera mors-uvae [Schwein] U. Braun & S. Takam and Podosphaera macularis [Wallr.] U. Braun & S. Takam), and other common diseases is determined through field observations and laboratory tests. The collection is screened for Tomato ringspot, Arabis mosaic, Tobacco rattle, Gooseberry vein-banding viruses, and phytoplasmas. Genetic fingerprints for standard cultivars are being developed through molecular marker analysis using simple sequence repeats (SSRs). Information on the Ribes collection and public access for requesting accessions is available online through the Germplasm Resources Information Network (GRIN). GRIN is available at http://www.ars-grin.gov/npgs.
C1 [Barney, D. L.; Robertson, N. L.] ARS, USDA, Arctic & Subarctic Plant Gene Bank, Palmer, AK 99645 USA.
[Hummer, K. E.; Gilmore, B. S.] United States Dept Agr, Natl Clonal Germplasm Repository, Agr Res Serv, Corvallis, OR USA.
RP Barney, DL (reprint author), ARS, USDA, Arctic & Subarctic Plant Gene Bank, Palmer, AK 99645 USA.
NR 13
TC 0
Z9 0
U1 0
U2 5
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-08-6
J9 ACTA HORTIC
PY 2012
VL 946
BP 73
EP 76
PG 4
WC Agronomy; Horticulture
SC Agriculture
GA BDH71
UT WOS:000313283300008
ER
PT S
AU Bassil, NV
Nyberg, A
Hummer, KE
Graham, J
Dossett, M
Finn, CE
AF Bassil, N. V.
Nyberg, A.
Hummer, K. E.
Graham, J.
Dossett, M.
Finn, C. E.
BE Tanovic, B
TI A Universal Fingerprinting Set for Red Raspberry
SO X INTERNATIONAL RUBUS AND RIBES SYMPOSIUM
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 10th International Rubus and Ribes Symposium
CY JUN 22-26, 2011
CL Zlatibor, SERBIA
SP Int Soc Hort Sci (ISHS), Sirogojno Co, Ploeger, Agro Market, BSK, Visys, Galenika - Fitofarmacija, Weremczuk, Syngenta, Univ Belgrade, Fac Agr, Inst Pesticide & Environm Protect
DE Rubus idaeus; blackberry; black raspberry; simple sequence repeat (SSR)
markers
ID SSR MARKERS
AB Red raspberry, Rubus idaeus L., is the most economically important fruit crop in the highly diverse Rubus subgenus Idaeobatus. This subgenus also includes black raspberry R. occidentalis L. The USDA-ARS National Clonal Germplasm Repository (Corvallis, Ore.), is responsible for preserving a Rubus collection of 1940 accessions that includes 370 red raspberry genotypes originating from 26 countries. These red raspberry clones are maintained as potted plants in screenhouses. Microsatellite or simple sequence repeat (SSR) markers can be used for rapid identity verification. The objective of this study was to develop a universal SSR fingerprinting set for establishing genetic profiles for red raspberry accessions and enabling comparison of genotypes between collections. We tested 24 SSRs for ease of scoring and polymorphism in 35 red raspberry accessions common to both the NCGR and the James Hutton Institute. Ten additional species genotypes with edible berries, including Rubus subsp. Rubus and R. trivialis Mich., the American black raspberry (R. occidentalis), purple raspberry (R. xneglectus Peck) and two Asian black raspberry species (R. biflorus Buch.-Ham. ex Sm. and R. niveus Thunb.) were also examined. Six SSRs were easy to score, polymorphic, and mapped to five of the seven red raspberry linkage groups. They were amplified in two multiplexes and were successful in comparing fingerprints from eight red raspberry accessions at both genebanks. The fingerprinting set differentiated between the unique accessions. This protocol is recommended for scientists and industry for raspberry identity verification.
C1 [Bassil, N. V.; Nyberg, A.; Hummer, K. E.] ARS, USDA, 33447 Peoria Rd, Corvallis, OR 97333 USA.
[Graham, J.] James Hutton Inst, Invergowrie, England.
[Dossett, M.] Oregon State Univ, Dept Hort, Corvallis, OR 97331 USA.
[Finn, C. E.] USDA ARS, Hort Crop Res Lab, Corvallis, OR 97330 USA.
RP Bassil, NV (reprint author), ARS, USDA, 33447 Peoria Rd, Corvallis, OR 97333 USA.
FU USDA- ARS CRIS [5358- 21000- 038- 00D]
FX We would like to thank the USDA- ARS CRIS Project 5358- 21000- 038- 00D
for funding this project. We would also like to acknowledge laboratory
technical assistance provided by Estefania Elorriaga and NCGR
screenhouse staff members who work hard on maintaining integrity of the
caneberry collection in a tight bench space. Mention of trade names or
commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the U. S. Department of Agriculture.
NR 7
TC 1
Z9 1
U1 2
U2 12
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-08-6
J9 ACTA HORTIC
PY 2012
VL 946
BP 83
EP 87
PG 5
WC Agronomy; Horticulture
SC Agriculture
GA BDH71
UT WOS:000313283300010
ER
PT S
AU Robertson, NL
Quito-Avila, DF
Martin, RR
AF Robertson, N. L.
Quito-Avila, D. F.
Martin, R. R.
BE Tanovic, B
TI Alaskan Ribes L. and Rubus L. Plant Species Surveyed for Viruses
SO X INTERNATIONAL RUBUS AND RIBES SYMPOSIUM
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 10th International Rubus and Ribes Symposium
CY JUN 22-26, 2011
CL Zlatibor, SERBIA
SP Int Soc Hort Sci (ISHS), Sirogojno Co, Ploeger, Agro Market, BSK, Visys, Galenika - Fitofarmacija, Weremczuk, Syngenta, Univ Belgrade, Fac Agr, Inst Pesticide & Environm Protect
DE currant; wild raspberry; vitivirus; Ribes nigrum L.; Ribes rubrum L.;
Rubus strigosus L.
ID RT-PCR; RNA
AB Alaska's domesticated and native Ribes and Rubus genera have virtually gone unchecked for pathogen detections. Cultivated Ribes species are predominantly found in home gardens and landscape areas along highways and in cities. In 2008, while surveying native plants for diseases in North Central Alaska near the town of North Pole, mottled leaves were readily visible on wild raspberries (Rubus strigosus L.) growing in agricultural berms and on recent clearings next to forests. In 2009 and 2010, other sites close to the original sites were observed to have similar symptoms. Initial protein extracts from partially purified preparations revealed a putative coat protein about 30 kDa. Mechanical transmission occurred in Nicotiana benthamiana and Chenopodium quinoa. Virion RNA preparations contained two dominant bands about 5.9 kb and 1.9 kb. Based on these biological parameters and similarities with Raspberry bushy dwarf virus, leaf sap and purified virion from infected raspberry and N. benthamiana were assayed for RBDV by ELISA and western blot. Leaf samples were also tested specifically for RBDV by RT-PCR. Negative results indicated that RBDV was not the causal agent involved in the native raspberry disease. Commercial raspberries growing near infected wild plants did not have symptoms and did not test positive for viruses. Another virus was discovered and detected from domesticated black and red currants (Ribes nigrum L. and R. rubrum L.) in 2008 and 2010 on the Kenai Peninsula, Alaska. Diseased plants usually contained leaves with vein-clearing that developed into large spots. Field collected leaf samples tested positive for vitivirus using a RT-PCR assay adapted for vitivirus detection. Direct sequencing of the ca. 200 bp PCR product resulted in nucleotides that were most similar to species in the genus Vitivirus when analyzed in BLAST. This is the first time that viruses have been detected in currants and raspberries from Alaska and the first report of a vitivirus from Ribes spp.
C1 [Robertson, N. L.] ARS, USDA, Arctic & Subarct Plant Gene Bank, Palmer, AK USA.
[Quito-Avila, D. F.] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR USA.
[Martin, R. R.] United States Dept Agr, Agr Res Serv, Hort Crops Res Unit, Corvallis, OR USA.
RP Robertson, NL (reprint author), ARS, USDA, Arctic & Subarct Plant Gene Bank, Palmer, AK USA.
NR 9
TC 0
Z9 0
U1 0
U2 2
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-08-6
J9 ACTA HORTIC
PY 2012
VL 946
BP 237
EP 242
PG 6
WC Agronomy; Horticulture
SC Agriculture
GA BDH71
UT WOS:000313283300037
ER
PT S
AU Valenzuela-Estrada, LR
Bryla, DR
Hoashi-Erhardt, WK
Moore, PP
Forge, TA
AF Valenzuela-Estrada, L. R.
Bryla, D. R.
Hoashi-Erhardt, W. K.
Moore, P. P.
Forge, T. A.
BE Tanovic, B
TI Root Traits Associated with Phytophthora Root Rot Resistance in Red
Raspberry
SO X INTERNATIONAL RUBUS AND RIBES SYMPOSIUM
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 10th International Rubus and Ribes Symposium
CY JUN 22-26, 2011
CL Zlatibor, SERBIA
SP Int Soc Hort Sci (ISHS), Sirogojno Co, Ploeger, Agro Market, BSK, Visys, Galenika - Fitofarmacija, Weremczuk, Syngenta, Univ Belgrade, Fac Agr, Inst Pesticide & Environm Protect
DE Rubus idaeus; endodermis; exodermis; minirhizotron; root anatomy; root
production; suberin depositon
ID SUBERIN; SOJAE
AB Phytophthora root rot is a serious problem for commercial production of red raspberry (Rubus idaeus L.). Developing new cultivars with high resistance or tolerance to Phytophthora is therefore critical to sustaining profitable production and is a major focus of numerous raspberry breeding programs. Current breeding efforts to identify resistant genotypes screen large numbers of plants in the greenhouse and field, and select those demonstrating high tolerance to the disease. Little is known, however, why certain genotypes exhibit a better response than others under the presence of Phytophthora spp. In August 2009, we started collecting root images from minirhizotron tubes installed in a field trial of seven cultivars with varying degrees of resistance to root rot. The objective was to identify prominent root traits associated with little or no Phytophthora infection in raspberry so that the traits can be selected and incorporated into breeding material. The trial is located at the Washington State University Puyallup Research Center at a site with a long history of problems with root rot. The cultivars include 'Summit', which is highly resistant to root rot, 'Cascade Bounty' and 'Cascade Delight', also found to have high resistance, 'Meeker', the industry standard in the region with moderate resistance to root rot, 'Tulameen', which is similar to 'Meeker' in resistance, and 'Malahat' and 'Saanich', two cultivars highly susceptible to root rot. Our first year results indicate that cultivars with the highest resistance to root rot produced the most roots and the deepest root system. Resistant cultivars also had considerably less infection, according to qPCR analysis, by P. rubi, which is the species most often associated with root rot in raspberry. We began to examine the roots for evidence of suberin deposition, a physiological trait in some plants that inhibits hyphal penetration by soil pathogens such as Phytophthora. Preliminary histochemical observations on first-and second-order roots revealed that the most resistant cultivar, 'Summit', had less suberin in the root exodermis than blackberry, considered completely resistant to Phytophthora, but significantly more suberin than the least resistant cultivar, 'Malahat'. The work is ongoing, but so far, it appears that root rot resistance may be related to both rapid root production and deposition of suberin in the exodermal layer of the root cortex. If this is the case, the traits could be selected during breeding to increase raspberry resistance to root rot.
C1 [Valenzuela-Estrada, L. R.] Oregon State Univ, Dept Hort, Corvallis, OR 97331 USA.
[Bryla, D. R.] USDA ARS, Corvallis, OR 97331 USA.
[Hoashi-Erhardt, W. K.; Moore, P. P.] Washington State Univ, Puyallup Res & Extens Ctr, Puyallup, WA 99164 USA.
[Forge, T. A.] Agr & Food Canada, Agassiz, BC, Canada.
RP Valenzuela-Estrada, LR (reprint author), Oregon State Univ, Dept Hort, Corvallis, OR 97331 USA.
FU Washington Red Raspberry Commission
FX Thanks to the Washington Red Raspberry Commission for funding.
NR 13
TC 1
Z9 1
U1 1
U2 11
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-08-6
J9 ACTA HORTIC
PY 2012
VL 946
BP 283
EP 287
PG 5
WC Agronomy; Horticulture
SC Agriculture
GA BDH71
UT WOS:000313283300046
ER
PT S
AU Strik, BC
Finn, CE
AF Strik, B. C.
Finn, C. E.
BE Tanovic, B
TI Blackberry Production Systems - a Worldwide Perspective
SO X INTERNATIONAL RUBUS AND RIBES SYMPOSIUM
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 10th International Rubus and Ribes Symposium
CY JUN 22-26, 2011
CL Zlatibor, SERBIA
SP Int Soc Hort Sci (ISHS), Sirogojno Co, Ploeger, Agro Market, BSK, Visys, Galenika - Fitofarmacija, Weremczuk, Syngenta, Univ Belgrade, Fac Agr, Inst Pesticide & Environm Protect
DE trailing blackberry; erect; semi-erect; pruning; training; off-season
ID PRIMOCANE-FRUITING BLACKBERRY; MARION TRAILING BLACKBERRY; ARAPAHO
THORNLESS BLACKBERRY; NITROGEN-FERTILIZATION; SUPPRESSION DATE;
COLD-HARDINESS; YIELD; MANAGEMENT; TEMPERATURE; EXTEND
AB There are generally three types of blackberry: the erect (e.g. 'Navaho', 'Ouachita'); semi-erect (e.g. 'Chester Thornless', 'Loch Ness'); and trailing (e.g. 'Marion', 'Boysen'). All types can be grown for fresh and processed markets, although the trailing types with their small seed (pyrene) size and aromatic flavor are considered superior for processed markets. The largest blackberry production regions are Mexico, Europe (particularly Serbia), and the USA (particularly Oregon) where the predominant types grown are erect, semi-erect, and trailing, respectively. Production systems for these types of blackberries differ with modifications in some regions depending on historical production differences, cultivar, and harvest method. Trailing blackberries are generally trained to a two-to three-wire trellis. Primocanes are either carefully managed under the canopy for every-year production or are left un-managed in the on-year of alternate year (AY) production systems. AY production systems are most common in Oregon where they are used to maximize cold tolerance and minimize cane disease. Primocane suppression techniques are used to maximize machine-harvest efficiency, while training techniques can be utilized to increase yield and cold hardiness. Erect blackberries are generally grown in hand-harvested fresh market production systems. The type of trellis used, the extent of cane training (tying or no tying), and the degree of main cane tipping and the amount and frequency of branch cane shortening in erect blackberry varies with region. In Mexico, specialized production systems, which use chemical defoliants, pruning, and growth regulators, have been developed to extend the season for erect blackberry cultivars such as 'Tupy'. Semi-erect blackberries are generally grown on a more elaborate trellis, sometimes with a divided canopy. Depending on production region, primocanes may be summer pruned to a high (similar to 1.7 m) or low (similar to 0.5 m) height to encourage branching; management of branches differs among regions. Recently, annual-fruiting, erect blackberries have being trialed by commercial growers in many production regions. Early evidence indicates this type of blackberry may offer advantages for out-of-season production in warmer climates, provided the plantings are pruned and managed well. As demand for blackberries continues to increase, new cultivars are being developed including primocane- or annual-fruiting, erect types and hybrids between erect, semi-erect, and trailing types that require modifications in the traditional pruning and training systems.
C1 [Strik, B. C.] Oregon State Univ, Dept Hort, 4017 ALS, Corvallis, OR 97331 USA.
[Finn, C. E.] USDA ARS, Hort Crop Res Lab, Corvallis, OR 97333 USA.
RP Strik, BC (reprint author), Oregon State Univ, Dept Hort, 4017 ALS, Corvallis, OR 97331 USA.
NR 28
TC 19
Z9 20
U1 3
U2 8
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-08-6
J9 ACTA HORTIC
PY 2012
VL 946
BP 341
EP 347
PG 7
WC Agronomy; Horticulture
SC Agriculture
GA BDH71
UT WOS:000313283300056
ER
PT S
AU Kogut, MH
McReynolds, JL
He, H
Genovese, KJ
Jesudhasan, PR
Davidson, A
Cepeda, MA
Pillai, SD
AF Kogut, M. H.
McReynolds, J. L.
He, H.
Genovese, K. J.
Jesudhasan, P. R.
Davidson, A.
Cepeda, M. A.
Pillai, S. D.
BE Spier, R
TI Electron-beam Irradiation Inactivation of Salmonella: Effects on Innate
Immunity and Induction of Protection Against Salmonella enterica serovar
Typhimurium Challenge of Chickens
SO 5TH VACCINE AND ISV ANNUAL GLOBAL CONGRESS
SE Procedia in Vaccinology
LA English
DT Proceedings Paper
CT 5th Vaccine and ISV Annual Global Congress
CY OCT 02-04, 2011
CL Seattle, WA
SP ISV
DE Chickens; Electron-beam irradiation; Salmonella; innate immunity;
priming
ID ENTERITIDIS ORGAN INVASION; TOLL-LIKE RECEPTORS; DAY-OLD CHICKENS;
OXIDATIVE BURST; BROILER CHICKS; NITRIC-OXIDE; IN-VITRO; CPG
OLIGODEOXYNUCLEOTIDES; BACTERICIDAL ACTIVITIES; GAMMA-IRRADIATION
AB Our laboratories are investigating the use of High Energy (10 MeV) Electron-Beam (E-beam) irradiation for is potential use in vaccine development. Ionizing radiation inactivates microorganisms by "direct and indirect" effects on nucleic acids and other cellular components. Though the cells are inactivated, the surface antigenic properties of the microorganisms remain unaltered. We hypothesized that electron-beam (E-beam) inactivated Salmonella enterica serovars could be used as a potential immune modulator to activate the innate immune response and thus reduce Salmonella intestinal colonization and shedding in neonatal chickens. Three replicate experiments were designed to evaluate the efficacy of a high energy E-beam irradiated Salmonella enterica serovar Typhimurium (ST) administered in ovo to: (a) induce a functional innate immune response and (b) reduce ST colonization in the ceca of chicks three-weeks post-hatch. We have previously shown that unmethylated CpG motifs of bacteria DNA oligodeoxynucleotides (CpG-ODN) given in ovo stimulates innate immune responsiveness of chicken heterophils and increases resistance of young chickens to SE colonization; thus were used as positive controls in these experiments Eighteen-day-old chicken embryos were equally divided into four independent treatment groups: (1) a negative control (sham injected, no challenge) group, (2) an infected control (sham injected, challenged) group, (3) a CpG-ODN injected, challenged positive control, and (4) an E-beam ST-injected, challenged group. All treatment groups contained 100 birds, half of the animals from each treatment group were euthanized on day 4 post-hatch so that peripheral blood granulocytes (heterophils) could be collected to evaluate the functional innate immune response. The remaining birds where reared under normal housing conditions for the remainder of the experiment. On day 18 post-hatch the birds were challenged with the homologous ST strain and five days later (day 23 post-hatch), the experiment was terminated to evaluate the colonization of ST in the ceca of the birds. Differences in the leukocyte function and in the log(10) cfu of ST counts among treatment groups were determined by analysis of variance. Significant differences were further separated using Duncan's multiple range tests. Here, heterophil function was measured using in vitro assays for (1) oxidative burst and (2) degranulation. Heterophils from the CpG-ODN and E-beam ST-treated birds exhibited a significant increase (P <= 0.05) in both the oxidative response and degranulation when compared to all other treatment groups with no differences in heterophil functions between the CpG-ODN and e-beam-treated groups. ST colonization of the ceca was significantly reduced (P <= 0.05) in both the CpG-ODN and the E-beam ST-treated birds when compared to the non-vaccinated control birds. These results demonstrate that in ovo administration of E-beam irradiated Salmonella induced a primed heterophil-mediated innate immune response and provide a protective intestinal colonization-inhibition effect against a homologous Salmonella challenge. (C) 2012 Published by Elsevier Ltd. Selection and/or peer-review under responsibility of the 5th vaccine conference organizing conunittee.
C1 [Kogut, M. H.; McReynolds, J. L.; He, H.; Genovese, K. J.] ARS, USDA, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
[Jesudhasan, P. R.; Davidson, A.; Cepeda, M. A.; Pillai, S. D.] Texas A&M Univ, Natl Ctr E Beam Rers, College Stn, TX 77845 USA.
RP Kogut, MH (reprint author), ARS, USDA, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
NR 58
TC 1
Z9 1
U1 0
U2 4
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1877-282X
J9 PROCEDIA VACCINOL
JI Procedia Vaccinol.
PY 2012
VL 6
BP 47
EP 63
DI 10.1016/j.provac.2012.04.008
PG 17
WC Immunology; Medicine, Research & Experimental
SC Immunology; Research & Experimental Medicine
GA BDD67
UT WOS:000312833700007
ER
PT S
AU Menage, D
Chetehouna, K
Mell, W
AF Menage, D.
Chetehouna, K.
Mell, W.
GP IOP
TI Numerical simulations of fire spread in a Pinus pinaster needles fuel
bed
SO 6TH EUROPEAN THERMAL SCIENCES CONFERENCE (EUROTHERM 2012)
SE Journal of Physics Conference Series
LA English
DT Proceedings Paper
CT 6th European Thermal Sciences Conference (Eurotherm)
CY SEP 04-07, 2012
CL Poitiers, FRANCE
ID PHYSICAL MODEL; PROPAGATION; BEHAVIOR; CONVECTION; RADIATION
AB The main aim of this paper is to extend the cases of WFDS model validation by comparing its predictions to literature data on a ground fire spreading in a Pinus pinaster needles fuel bed. This comparison is based on the experimental results of Mendes-Lopes and co-workers. This study is performed using the same domain as in the experiments (3.0mx1.2mx0.9m) with a mesh of 49,280 cells. We investigate the influence of wind (varied between 0 and 2 m/s) and moisture content (10 and 18%) on the rate of spread. The WFDS rate of spread is determined using a cross-correlation function of ground temperature profiles. The simulated rate of spread, as well as temperature, compared favourably to experimental values and show the WFDS model capacity to predict ground fires in Pinus Pinaster fuel beds.
C1 [Menage, D.; Chetehouna, K.] ENSI Bourges, Lab PRISME, UPRES 4229, Bourges, France.
[Mell, W.] US Forest Serv, Pacific Wildland Fire Sci Lab, Seattle, WA USA.
RP Menage, D (reprint author), ENSI Bourges, Lab PRISME, UPRES 4229, Bourges, France.
EM khaled.chetehouna@ensi-bourges.fr
FU Joint Fire Science Program [JFSP07-1-5-0]
FX Partial funding for this work from the Joint Fire Science Program
(JFSP07-1-5-0) for W. Mell is gratefully acknowledged.
NR 29
TC 0
Z9 0
U1 0
U2 5
PU IOP PUBLISHING LTD
PI BRISTOL
PA DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND
SN 1742-6588
J9 J PHYS CONF SER
PY 2012
VL 395
AR 012011
DI 10.1088/1742-6596/395/1/012011
PG 8
WC Thermodynamics; Engineering, Mechanical; Physics, Applied
SC Thermodynamics; Engineering; Physics
GA BDA09
UT WOS:000312264800011
ER
PT J
AU Warren, MW
Kauffman, JB
Murdiyarso, D
Anshari, G
Hergoualc'h, K
Kurnianto, S
Purbopuspito, J
Gusmayanti, E
Afifudin, M
Rahajoe, J
Alhamd, L
Limin, S
Iswandi, A
AF Warren, M. W.
Kauffman, J. B.
Murdiyarso, D.
Anshari, G.
Hergoualc'h, K.
Kurnianto, S.
Purbopuspito, J.
Gusmayanti, E.
Afifudin, M.
Rahajoe, J.
Alhamd, L.
Limin, S.
Iswandi, A.
TI A cost-efficient method to assess carbon stocks in tropical peat soil
SO BIOGEOSCIENCES
LA English
DT Article
ID INDONESIAN PEATLANDS; LAND-USE; KALIMANTAN; EMISSIONS; DEGRADATION;
DYNAMICS; MALAYSIA; SUMATRA; BORNEO; POOL
AB Estimation of belowground carbon stocks in tropical wetland forests requires funding for laboratory analyses and suitable facilities, which are often lacking in developing nations where most tropical wetlands are found. It is therefore beneficial to develop simple analytical tools to assist belowground carbon estimation where financial and technical limitations are common. Here we use published and original data to describe soil carbon density (kgC m(-3); C-d) as a function of bulk density (gC cm(-3); B-d), which can be used to rapidly estimate belowground carbon storage using B-d measurements only. Predicted carbon densities and stocks are compared with those obtained from direct carbon analysis for ten peat swamp forest stands in three national parks of Indonesia. Analysis of soil carbon density and bulk density from the literature indicated a strong linear relationship (C-d = B-d x 495.14+5.41, R-2 = 0.93, n = 151) for soils with organic C content > 40 %. As organic C content decreases, the relationship between C-d and B-d becomes less predictable as soil texture becomes an important determinant of C-d. The equation predicted belowground C stocks to within 0.92% to 9.57% of observed values. Average bulk density of collected peat samples was 0.127 g cm(-3), which is in the upper range of previous reports for Southeast Asian peatlands. When original data were included, the revised equation C-d = B-d x 468.76 + 5.82, with R-2 = 0.95 and n = 712, was slightly below the lower 95% confidence interval of the original equation, and tended to decrease C-d estimates. We recommend this last equation for a rapid estimation of soil C stocks for well-developed peat soils where C content > 40 %.
C1 [Warren, M. W.] US Forest Serv, USDA, No Res Stn, Durham, NH 03824 USA.
[Kauffman, J. B.] Oregon State Univ, Dept Fisheries & Wildlife, Corvallis, OR 97331 USA.
[Kauffman, J. B.; Murdiyarso, D.; Hergoualc'h, K.; Kurnianto, S.; Purbopuspito, J.] Jalan CIFOR, Ctr Int Forestry Res, Situ Gede 16115, Bogor Barat, Indonesia.
[Murdiyarso, D.] Bogor Agr Univ, Dept Geophys & Meteorol, Jalan Meranti 16680, Darmaga Bogor, Indonesia.
[Anshari, G.; Gusmayanti, E.; Afifudin, M.] Univ Tanjungpura, Ctr Wetlands People & Biodivers, Pontianak 78124, West Kalimantan, Indonesia.
[Kurnianto, S.] Univ New Hampshire, Inst Study Earth Oceans & Space, Durham, NH 03824 USA.
[Rahajoe, J.; Alhamd, L.] Cibinong Sci Ctr, Sci Res Ctr Biol, Indonesian Inst, Cibinong, West Java, Indonesia.
[Limin, S.] Univ Palangka Raya, CIMTROP, Cent Kalimantan 73111, Indonesia.
[Iswandi, A.] Bogor Agr Univ, Dept Soil Sci & Land Management, Lab Soil Biotechnol, Jalan Meranti 16680, Indonesia.
RP Warren, MW (reprint author), US Forest Serv, USDA, No Res Stn, 271 Mast Rd, Durham, NH 03824 USA.
EM mwwarren@fs.fed.us
RI Purbopuspito, Joko/P-1165-2015;
OI Purbopuspito, Joko/0000-0002-4631-596X; Anshari,
Gusti/0000-0001-9639-0266
FU US State Department; US Agency for International Development's Tropical
Wetlands Initiative for Climate Adaptation and Mitigation (TWINCAM)
project
FX Funding for this study was provided by grants to the United States
Forest Service and Center for International Forestry Research by the US
State Department and the US Agency for International Development's
Tropical Wetlands Initiative for Climate Adaptation and Mitigation
(TWINCAM) project. The authors thank Lou Verchot and two anonymous
reviewers for their insightful comments and suggestions to improve the
manuscript. The authors also thank the local researchers, students, and
technicians who participated in the field and laboratory components of
this study. In addition, we thank the management and staff of Danau
Sentarum, Berbak, and Sebangau National Parks for providing
authorization, accommodation and logistical support for the field
portion of the study. Peat samples were analyzed at the Bogor
Agricultural University, Soil Biotechnology Laboratory.
NR 38
TC 21
Z9 21
U1 0
U2 42
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1726-4170
J9 BIOGEOSCIENCES
JI Biogeosciences
PY 2012
VL 9
IS 11
BP 4477
EP 4485
DI 10.5194/bg-9-4477-2012
PG 9
WC Ecology; Geosciences, Multidisciplinary
SC Environmental Sciences & Ecology; Geology
GA 058XC
UT WOS:000312667300021
ER
PT J
AU Dillman, KL
Ahti, T
Bjork, CR
Clerc, P
Ekman, S
Goward, T
Hafellner, J
Perez-Ortega, S
Printzen, C
Savic, S
Schultz, M
Svensson, M
Thor, G
Tonsberg, T
Vitikainen, O
Westberg, M
Spribille, T
AF Dillman, Karen L.
Ahti, Teuvo
Bjoerk, Curtis R.
Clerc, Philippe
Ekman, Stefan
Goward, Trevor
Hafellner, Josef
Perez-Ortega, Sergio
Printzen, Christian
Savic, Sanja
Schultz, Matthias
Svensson, Mans
Thor, Goran
Tonsberg, Tor
Vitikainen, Orvo
Westberg, Martin
Spribille, Toby
TI New records, range extensions and nomenclatural innovations for lichens
and lichenicolous fungi from Alaska, USA
SO HERZOGIA
LA English
DT Article
DE Arctic; Ascomycota; Bering Straits; biodiversity; fungi; Klondike;
lectotypification; nomenclature; Puttea
ID QUEEN-CHARLOTTE-ISLANDS; WESTERN NORTH-AMERICA; NATIONAL WILDLIFE
REFUGE; BRITISH-COLUMBIA; SOUTHEASTERN ALASKA; GENUS; CANADA; FLORA;
ASCOMYCOTA; SYNOPSIS
AB DILLMAN, K. L., AHTI, T., BJORK, C. R., CLERC, P., EKMAN, S., GOWARD, T., HAFELLNER, J., PEREZ-ORTEGA, S., PRINTZEN, C., SAVI, S., SCHULTZ, M., SVENSSON, M., THOR, G., TONSBERG, T., VITIKAINEN, O., WESTBERG, M. & SPRIBILLE, T. 2012. New records, range extensions and nomenclatural innovations for lichens and lichenicolous fungi from Alaska, U.S.A. - Herzogia 25: 177-210. Surveys of lichens and lichenicolous fungi have been taking place in the U.S. state of Alaska for more than 160 years, but until now assessing the full extent of their diversity has been hampered by the lack of a comprehensive and synonymized baseline inventory. In this paper we will begin to redress this by resolving outstanding nomenclatural issues and providing voucher data for a forthcoming catalog of Alaskan lichens, specifically: 1) synonymization,and/or resolution of status of species previously reported from Alaska, with emphasis on Alaskan types; 2) species new to the Alaska lichen biota; and 3) biogeographically significant new records from within Alaska. We report 91 species new to the flora of Alaska, including 65 lichens, three saprophytic calicioid fungi and 23 lichenicolous fungi. Of these, we report thirteen species, Biatora sphaeroidiza, Biatorella conspurcans, Chaenothecopsis arthoniae, Collemopsidium foveolatum, Dactylospora frigida, Halospora discrepans, Lecanora bryopsora, Opegrapha geographicola, Peltigera lyngei, Petractis clausa, Protoblastenia cyclospora, Thelocarpon impressellum and Usnea cylindrica as new to North America. In addition, Arthonia pruinata and Flavocetraria minuscula are new to Canada and Adelococcus alpestris new to the United States. We further place the following five names into synonymy: Lecania disceptans (Nyl.) Lynge [= Halecania alpivaga (Th.Fr.) M.Mayrhofer], Lecidea pallidella Nyl. [= Lecania subfuscula (Nyl.) S.Ekman], Lempholemma triptodes (Nyl.) Zahlbr. Leciophysma finmarkicum Th.Fr.), Polyblastia obtenta (Nyl.) Lynge [= Sporodictyon terrestre (Th.Fr.) S.Savic & Tibell], and Verrucaria pernigrata Nyl. [= Protothelenella sphinctrinoides (Nyl.) H.Mayrhofer & Poelt]. We propose restoring the long overlooked taxon Polyblastia exalbida (Nyl.) Zahlbr., currently known only from Alaska, to the North American lichen checklist. Finally, we propose the new combination Puttea caesia (Fr.) M.Svensson & T.Sprib. to replace Lecidea symmictella Nyl., which becomes a synonym.
C1 [Dillman, Karen L.] US Forest Serv, Tongass Natl Forest, Petersburg, AK 99833 USA.
[Ahti, Teuvo] Univ Helsinki, Finnish Museum Nat Hist, Bot Museum, FIN-00014 Helsinki, Finland.
[Bjoerk, Curtis R.; Goward, Trevor] Univ British Columbia, Beaty Museum, UBC Herbarium, Vancouver, BC V6T 1Z4, Canada.
[Clerc, Philippe] Conservatoire & Jardin Botan Ville Geneve, CH-1292 Chambesy Ge, Switzerland.
[Ekman, Stefan] Uppsala Univ, Museum Evolut, S-75236 Uppsala, Sweden.
[Hafellner, Josef; Spribille, Toby] Graz Univ, Inst Plant Sci, A-8010 Graz, Austria.
[Perez-Ortega, Sergio] CSIC, Ctr Ciencias Medioambient, Inst Recursos Nat, E-28006 Madrid, Spain.
[Printzen, Christian] Nat Hist Museum, Senckenberg Res Inst, D-60325 Frankfurt, Germany.
[Printzen, Christian] Biodivers & Climate Res Ctr LOEWE BiK F, D-60325 Frankfurt, Germany.
[Savic, Sanja] Uppsala Univ, Evolutionary Biol Ctr, Dept Systemat Bot, S-75236 Uppsala, Sweden.
[Schultz, Matthias] Univ Hamburg, Biozentrum Klein Flottbek & Botan Garten, D-22609 Hamburg, Germany.
[Svensson, Mans; Thor, Goran] Swedish Univ Agr Sci, Dept Ecol, S-75007 Uppsala, Sweden.
[Tonsberg, Tor] Univ Bergen, Museum Nat Hist, N-5020 Bergen, Norway.
[Westberg, Martin] Swedish Museum Nat Hist, Sect Cryptogam Bot, S-10405 Stockholm, Sweden.
[Spribille, Toby] Univ Montana, Div Biol Sci HS 304, Missoula, MT 59812 USA.
RP Spribille, T (reprint author), Graz Univ, Inst Plant Sci, Holteigasse 6, A-8010 Graz, Austria.
EM kdillman@fs.fed.us; teuvo.ahti@helsinki.fi; crbjork@gmail.com;
philippe.clerc@cjb.ville-ge.ch; stefan.ekman@evolmuseum.uu.se;
trevor.goward@botany.ubc.ca; josef.hafellner@uni-graz.at;
sperezortega@ccma.csic.es; Christian.Printzen@senckenberg.de;
sanja.savic@ebc.uu.se; schultzm@botanik.uni-hamburg.de;
Mans.Svensson@ekol.slu.se; goran.thor@nvb.slu.se;
tor.tonsberg@bm.uib.no; orvo.vitikainen@helsinki.fi;
martin.westberg@nrm.se; toby.spribille@mso.umt.edu
RI Perez-Ortega, Sergio/G-1257-2016
OI Perez-Ortega, Sergio/0000-0002-5411-3698
FU U.S. National Park Service, Klondike Gold Rush National Historical Park;
Glacier Bay National Park and Preserve [R9815110518]
FX We would like to thank Ulf Arup, Alan Fryday, Anders Nordin, Leif Tibell
and Einar Timdal for the identification or verification of several
specimens. Peter Kosnik and Walter Obermayer are thanked for performing
comparative TLC on several specimens. Tim Wheeler graciously allowed us
to cite his recently collected specimen of Protoparmelia atriseda. We
thank the curator of the herbarium F for a loan and the curators of ALA
and S for accommodating us on recent research visits. Irwin Brodo, Alan
Fryday, Paul Diederich and Helmut Mayrhofer provided detailed reviews.
Peter Nelson organized field access by CP and TS to the Tokositna and
Chulitna River areas in 2008. Work by SPO and TS was supported in part
by the U.S. National Park Service, Klondike Gold Rush National
Historical Park, and Glacier Bay National Park and Preserve (project
R9815110518 to the University of Montana).
NR 163
TC 6
Z9 6
U1 0
U2 13
PU BLAM E V
PI HALLE
PA BRYOLOGISCH-LICHENOLOGISCHE ARBEITSGEMEINSCHAFT MITTELEUROPA EV, UNIV
HALLE-WITTENBERG, NEUWERK 21, HALLE, D-06108, GERMANY
SN 0018-0971
J9 HERZOGIA
JI Herzogia
PY 2012
VL 25
IS 2
BP 177
EP 210
PG 34
WC Plant Sciences
SC Plant Sciences
GA 062JW
UT WOS:000312917100005
ER
PT J
AU Wang, S
Zhang, Z
Sun, G
Strauss, P
Guo, J
Tang, Y
Yao, A
AF Wang, S.
Zhang, Z.
Sun, G.
Strauss, P.
Guo, J.
Tang, Y.
Yao, A.
TI Multi-site calibration, validation, and sensitivity analysis of the MIKE
SHE Model for a large watershed in northern China
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID DISTRIBUTED HYDROLOGICAL MODEL; LARGE MOUNTAINOUS CATCHMENT; HIGH
SPATIAL VARIABILITY; PARAMETER-ESTIMATION; RUNOFF; CONSTRUCTION; SWAT;
STREAMFLOW; ALGORITHM; IMPACT
AB Model calibration is essential for hydrologic modeling of large watersheds in a heterogeneous mountain environment. Little guidance is available for model calibration protocols for distributed models that aim at capturing the spatial variability of hydrologic processes. This study used the physically-based distributed hydrologic model, MIKE SHE, to contrast a lumped calibration protocol that used streamflow measured at one single watershed outlet to a multi-site calibration method which employed streamflow measurements at three stations within the large Chaohe River basin in northern China. Simulation results showed that the single-site calibrated model was able to sufficiently simulate the hydrographs for two of the three stations (Nash-Sutcliffe coefficient of 0.65-0.75, and correlation coefficient 0.81-0.87 during the testing period), but the model performed poorly for the third station (Nash-Sutcliffe coefficient only 0.44). Sensitivity analysis suggested that streamflow of upstream area of the watershed was dominated by slow groundwater, whilst streamflow of middle-and down-stream areas by relatively quick interflow. Therefore, a multi-site calibration protocol was deemed necessary. Due to the potential errors and uncertainties with respect to the representation of spatial variability, performance measures from the multi-site calibration protocol slightly decreased for two of the three stations, whereas it was improved greatly for the third station. We concluded that multi-site calibration protocol reached a compromise in term of model performance for the three stations, reasonably representing the hydrographs of all three stations with Nash-Sutcliffe coefficient ranging from 0.59-072. The multi-site calibration protocol applied in the analysis generally has advantages to the single site calibration protocol.
C1 [Zhang, Z.; Guo, J.; Tang, Y.; Yao, A.] Beijing Forestry Univ, Key Lab Soil & Water Conservat & Desertificat Com, Minist Educ, Coll Soil & Water Conservat, Beijing 100083, Peoples R China.
[Wang, S.] N China Elect Power Univ, MOE Key Lab Reg Energy & Environm Syst Optimizat, Resources & Environm Res Acad, Beijing 102206, Peoples R China.
[Sun, G.] US Forest Serv, Eastern Forest Environm Threat Assessment Ctr, So Res Stn, USDA, Raleigh, NC 27606 USA.
[Strauss, P.] Fed Agcy Water Management, A-3252 Petzenkirchen, Austria.
RP Zhang, Z (reprint author), Beijing Forestry Univ, Key Lab Soil & Water Conservat & Desertificat Com, Minist Educ, Coll Soil & Water Conservat, Beijing 100083, Peoples R China.
EM zhqzhang@bjfu.edu.cn
RI Strauss, Peter/I-2983-2015
OI Strauss, Peter/0000-0002-8693-9304
FU special fund for the scientific research of forest public welfare
industry [201204102]; Ministry of Science and Technology, China through
Key International Scientific and Technical Cooperation Project
[2009DFA92430]; Program for Innovative Research Team in University
[IRT1127]; Fundamental Research Funds for the Central Universities
[12MS68]
FX The work is financially supported by special fund for the scientific
research of forest public welfare industry (Project No. 201204102) and
by the Ministry of Science and Technology, China through Key
International Scientific and Technical Cooperation Project (Grant No.
2009DFA92430). Also part of the work was supported by the Program for
Innovative Research Team in University (IRT1127), and the Fundamental
Research Funds for the Central Universities (12MS68).
NR 46
TC 17
Z9 18
U1 6
U2 36
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
EI 1607-7938
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 12
BP 4621
EP 4632
DI 10.5194/hess-16-4621-2012
PG 12
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 059ID
UT WOS:000312696800009
ER
PT J
AU Wang, L
Liu, J
Sun, G
Wei, X
Liu, S
Dong, Q
AF Wang, L.
Liu, J.
Sun, G.
Wei, X.
Liu, S.
Dong, Q.
TI "Water, climate, and vegetation: ecohydrology in a changing world"
Preface
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Editorial Material
ID LOESS PLATEAU; NORTHWEST CHINA; SOIL-MOISTURE; RIVER; STREAMFLOW;
IMPACTS; CATCHMENTS; DYNAMICS; INTERIOR; REACHES
C1 [Wang, L.] Indiana Univ Purdue Univ, Indianapolis IUPUI, Dept Earth Sci, Indianapolis, IN 46202 USA.
[Wang, L.] Univ New S Wales, Sch Civil & Environm Engn, Water Res Ctr, Sydney, NSW 2052, Australia.
[Liu, J.] Beijing Forestry Univ, Sch Nat Conservat, Beijing 100083, Peoples R China.
[Sun, G.] US Forest Serv, Eastern Forest Environm Threat Assessment Ctr, USDA, Raleigh, NC 27606 USA.
[Wei, X.] Univ British Columbia, Kelowna, BC V1V 1V7, Canada.
[Liu, S.] Chinese Acad Forestry, Res Inst Forest Ecol Environm & Protect, Beijing 100091, Peoples R China.
[Dong, Q.] USGS, Ft Collins Sci Ctr, Ft Collins, CO 80526 USA.
RP Wang, L (reprint author), Indiana Univ Purdue Univ, Indianapolis IUPUI, Dept Earth Sci, Indianapolis, IN 46202 USA.
EM w.lixin@gmail.com
RI Liu, Junguo/B-3021-2012; Wang, Lixin/A-2572-2008
OI Liu, Junguo/0000-0002-5745-6311; Wang, Lixin/0000-0003-0968-1247
NR 25
TC 2
Z9 2
U1 1
U2 46
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 12
BP 4633
EP 4636
DI 10.5194/hess-16-4633-2012
PG 4
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 059ID
UT WOS:000312696800010
ER
PT S
AU Aradhya, MK
Preece, JE
AF Aradhya, M. K.
Preece, J. E.
BE Aradhya, MK
Kluepfel, DA
TI Research on Wild Relatives of Fruit and Nut Crops at the Davis
Repository
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE crop wild relatives; genetic characterization; genetic conservation;
Juglans; phylogeny; Vitis
ID JUGLANS JUGLANDACEAE; CHLOROPLAST DNA; RETICULATE EVOLUTION; NONCODING
REGIONS; UNIVERSAL PRIMERS; DIVERGENCE TIMES; TERTIARY FLORAS;
PHYLOGENY; AMPLIFICATION; BIOGEOGRAPHY
AB The USDA germplasm repository in Davis is responsible for acquiring, conserving and distributing a broad spectrum of diversity of subtropical and temperate fruit and nut species germplasm to stakeholders around the world. Currently the repository holds over 7000 germplasm accessions including Actinidia (kiwi fruit), Diospyros (persimmon), Ficus (fig), Juglans (walnuts), Morus (mulberry), Olea (olive), Pistacia (pistachio), Prunus (stonefruits and almond), Punica (pomegranate), Vitis (grape), and other minor genera. Wild relatives are widely represented in the collections with nearly 50% of the accessions and >90% of the taxa (196 out a total of 215 taxa) representing the wild gene pools. Research at the repository is mainly focused on genetic characterization of germplasm using molecular markers and morphological traits to quantify and describe genetic structure and differentiation within and among species and gene pools. Various population genetic, multivariate and phylogenetic approaches are utilized to classify and elucidate genetic and evolutionary relationships within and among taxa and gene pools. Most of our crop genera are tertiary disjuncts with modern distributions showing disjunction between Eurasia and the Americas. There is rich fossil history and excellent opportunities for analyzing the phylogeny and historical biogeography to understand the paleobotanical and evolutionary events that led to the modern disjunctions. In addition to traditional uses of germplasm for genetic improvement of crops, the collections are increasingly being used in association genetic analyses for gene discovery and to dissect complex phenotypes by exploiting historical genetic recombination. We will review several studies we have conducted to illustrate different methods and approaches to characterize germplasm collections, and discuss results and implications for effective conservation, management, and utilization of germplasm collections.
C1 [Aradhya, M. K.; Preece, J. E.] Univ Calif Davis, USDA ARS, Davis, CA 95616 USA.
RP Aradhya, MK (reprint author), Univ Calif Davis, USDA ARS, Davis, CA 95616 USA.
EM aradhya@ucdavis.edu
NR 50
TC 2
Z9 2
U1 0
U2 4
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 19
EP 32
PG 14
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900001
ER
PT S
AU Ayala-Silva, T
Gordon, GG
Schnell, R
Winterstein, M
AF Ayala-Silva, T.
Gordon, G. G.
Schnell, R.
Winterstein, M.
BE Aradhya, MK
Kluepfel, DA
TI Application of Propiconazole in Management of Laurel Wilt Disease in
Avocado (Persea americana Mill.) Trees
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE ambrosia beetle; fungicide injection; avocado; Raffaelea sp.; Xyleborus
glabratus
ID SOUTHEASTERN UNITED-STATES; REDBAY TREES; SCOLYTINAE; COLEOPTERA;
CURCULIONIDAE; LAURACEAE; SYMBIONT; PATHOGEN; VECTOR; OAK
AB Laurel wilt is a vascular disease of Lauraceous plants caused by a fungus (Raffaelea spp.) that is carried by a recently introduced, nonnative ambrosia beetle (Xyleborus glabratus). The disease is devastating to Persea species including redbay (Persea borbonia) and avocado (Persea americana) trees in forests, parks, orchards and residential areas in the southeastern United States. Avocado is the most important agricultural crop susceptible to laurel wilt. Management strategies for reducing its impact in Persea sp. (specifically P. americana) are needed. The USDA ARS NPGS collection of avocado is conserved at the National Germplasm Repository (NGR) in Miami-Dade County Florida. Although the avocado collection is currently free from the ambrosia beetle and the laurel wilt disease, it is believed to be only a matter of time before this insect/disease complex reaches the collection. Macro infusion of the fungicide Propiconazole (Alamo (R)) has been shown to control the disease in red bay and other oak species. In this study, the use of the systemic fungicide Propiconazole (Alamo (R)) macro infusion through the root system was infused at the recommended doses. Plants were infused in June 2009 and again in February 2011. The rate of application varied greatly with the diameter of tree trunk at breast level (dbl). The rates recommended on the Alamo (R) label were the rates use initially. Results from research conducted in redbay suggest propiconazole could be useful in preventing laurel wilt in redbay and other Persea species. Preliminary results demonstrated propiconazole was present in branches of trees injected 14 months after treatment.
C1 [Ayala-Silva, T.; Gordon, G. G.; Schnell, R.; Winterstein, M.] USDA ARS, Subtrop Hort Res Stn, Miami, FL 33158 USA.
RP Ayala-Silva, T (reprint author), USDA ARS, Subtrop Hort Res Stn, 13601 Old Cutler Rd, Miami, FL 33158 USA.
EM tomas.ayala-silva@ars.usda.gov
NR 22
TC 0
Z9 0
U1 1
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 71
EP 78
PG 8
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900007
ER
PT S
AU Kluepfel, DA
Aradhya, MK
Browne, GT
McKenry, MV
Leslie, CA
McClean, AE
Moersfelder, J
Velasco, D
Baumgartner, K
AF Kluepfel, D. A.
Aradhya, M. K.
Browne, G. T.
McKenry, M. V.
Leslie, C. A.
McClean, A. E.
Moersfelder, J.
Velasco, D.
Baumgartner, K.
BE Aradhya, MK
Kluepfel, DA
TI The Quest to Identify Disease Resistance in the USDA-ARS Juglans
Germplasm Collection
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE rootstocks; disease resistance; Juglans; walnut breeding; crown gall
resistance; phytophthora resistance; nematode resistance
ID CROWN-GALL RESISTANCE; ARMILLARIA ROOT DISEASE; ENGLISH WALNUT TREES;
AGROBACTERIUM-TUMEFACIENS; IN-VITRO; PHYTOPHTHORA; ROOTSTOCKS;
SUSCEPTIBILITY; HYBRIDS; MELLEA
AB Ninety-nine percent of the U. S. Persian walnut crop is produced in California, USA, where walnut trees are typically grown on the hybrid rootstock Paradox (Juglans hindsii x Juglans regia). However, despite their popularity and relative advantage, Paradox seedling rootstocks are susceptible to Agrobacterium tumefaciens (crown gall), root-lesion and root-knot nematodes, Armillaria mellea (Armillaria root disease) and Phytophthora spp. (Phytophthora root and crown rot). Each of these diseases can cause serious loss to the California walnut industry. Therefore, continued walnut rootstock improvement is needed to identify disease-resistant, commercially-acceptable rootstocks. Towards this end we are examining the Juglandaceae collection at the USDA-ARS National Clonal Germplasm Repository (NCGR) in Davis, CA (USA). This collection contains the largest assemblage of wild Juglans spp. in North America with >550 accessions of black walnut, Asian butternut, Persian walnut, and wingnut (Pterocarya). Our preliminary evaluations of this Juglans germplasm collection has revealed resistance to A. tumefaciens and Phytophthora spp. among the J. hindsii, J. major, J. microcarpa and Pterocarya accessions, and root-lesion nematode resistance in J. cathayensis. Preliminary evaluations of these initial findings provide a foundation for continued examination of Juglans wild relatives to identify novel genotypes, which may contain valuable genes for disease resistance and environmental adaptation.
C1 [Kluepfel, D. A.; Browne, G. T.; McClean, A. E.; Baumgartner, K.] Univ Calif Davis, Crops Pathol & Genet Res Unit, USDA ARS, Dept Plant Pathol, 1 Shields Ave, Davis, CA 95616 USA.
[Aradhya, M. K.; Moersfelder, J.] USDA ARS, Natl Clonal Germplasm Resp, Davis, CA 95616 USA.
[McKenry, M. V.] Univ Calif Riverside, Dept Nematol, Kearney Agr Ctr, Riverside, CA 93648 USA.
[Leslie, C. A.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
RP Kluepfel, DA (reprint author), Univ Calif Davis, Crops Pathol & Genet Res Unit, USDA ARS, Dept Plant Pathol, 1 Shields Ave, Davis, CA 95616 USA.
EM dakluepfel@ucdavis.edu
NR 46
TC 0
Z9 0
U1 0
U2 2
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 105
EP 111
PG 7
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900011
ER
PT S
AU Koehmstedt, AM
Aradhya, MK
Soleri, D
Smith, JL
Polito, VS
AF Koehmstedt, A. M.
Aradhya, M. K.
Soleri, D.
Smith, J. L.
Polito, V. S.
BE Aradhya, MK
Kluepfel, DA
TI Analysis of Genetic Diversity and Structure of Some Historic Olive (Olea
europaea L.) Germplasm in the United States Using Microsatellite Markers
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE SSRs; cluster analysis; genetic resources management; California;
Arizona
ID SEQUENCE REPEATS SSRS; CULTIVARS; IDENTIFICATION
AB Fifteen microsatellite simple-sequence repeat (SSR) loci were used to genotype 58 accessions of cultivated olive, Olea europaea L. ssp. europaea var. europaea, from two collections of 19th to 20th century plantings in Arizona and California, in order to examine genetic diversity and structure within and among collections. These collections are Lotusland Gardens in Santa Barbara, CA, and the Arboretum of the University of Arizona, Tucson. Genotypes in the olive collection at the USDA-ARS National Clonal Germplasm Repository for Fruit & Nut Crops (NCGR) in Davis, California were compared with the historic collections to potentially establish cultivar identity. Mean number of alleles per locus was 5.0 for Lotusland and 3.5 for the University of Arizona. Mean observed heterozygosity per collection was 0.650 for Lotusland and 0.598 for the University of Arizona. Up to 90% of the samples per collection were found to be synonymous with named, primarily Spanish or Italian, cultivars, yet these historic collections also contain significant genetic diversity, including genotypes and alleles not present in the NCGR germplasm collection. The cluster analysis placed the unknown genotypes within clades containing cultivars from the Eastern Mediterranean or from throughout the Mediterranean region, and in some cases produced relatively distinct branches.
C1 [Koehmstedt, A. M.; Aradhya, M. K.; Smith, J. L.] USDA ARS Natl Clonal Germplasm Repository, 1 Shields Ave, Davis, CA 95616 USA.
[Soleri, D.] Univ Calif Santa Barbara, Dept Geog, Santa Barbara, CA 93106 USA.
[Polito, V. S.] Univ Calif, Dept Plant Sci, Davis, CA 95616 USA.
RP Koehmstedt, AM (reprint author), USDA ARS Natl Clonal Germplasm Repository, 1 Shields Ave, Davis, CA 95616 USA.
EM anne.koehmstedt@ars.usda.gov
FU USDAARS Project CRIS [5306- 21000- 016- 001]
FX The authors wish to acknowledge and thank Virginia Hayes, Curator of the
Living Collections at Lotusland Gardens, Elizabeth Davison, Director of
University of Arizona Campus Arboretum, and Jolie Goldenetz of the
University of Arizona, for granting access to and providing samples and
important information from their olive collections. This study was
funded by the USDAARS Project CRIS 5306- 21000- 016- 001.
NR 17
TC 0
Z9 0
U1 0
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 159
EP 168
PG 10
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900017
ER
PT S
AU Hummer, KE
Postman, JD
Bassil, N
Nathewet, P
AF Hummer, K. E.
Postman, J. D.
Bassil, N.
Nathewet, P.
BE Aradhya, MK
Kluepfel, DA
TI Chromosome Numbers and Flow Cytometry of Strawberry Wild Relatives
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE Fragaria; chromosome counts; cytology; crop wild relatives; flow
cytometry
ID KARYOTYPE ANALYSIS; FRAGARIA ROSACEAE
AB The U.S. Department of Agriculture, Agricultural Research Service, National Clonal Germplasm Repository (NCGR), Corvallis, Oregon, maintains the national collection for strawberry (Fragaria L.) germplasm. The hybrid strawberry of commerce, F. xananassa Duchesne ex Rozier has two octoploid wild American relatives in the primary gene pool (Fragaria chiloensis (L.) Mill. subsp. chiloensis forma chiloensis and F. virginiana Miller subsp. virginiana). The secondary gene pool includes about 18 additional species native circumpolar boreal, in a polyploid series from diploid to decaploid. Chromosome numbers of root tip cells were counted for 46 strawberries in the Repository collection representing 28 taxa (species and subspecies taxa). The base chromosome number was seven. Counted genotypes included an aneuploid, fifteen diploids, 3 tetraploids, 1 hexaploid, 14 octoploids, and 2 decaploids. In addition, flow cytometry was performed. Flow cytometry reliably determined gross ploidy level. Diploid species had a range of DNA ratios from 0.22 to 0.29. Tetraploids had a DNA ratio of 0.47 to 0.50. The hexaploid DNA ratio was 0.66. That of the octoploids ranged from 0.74 to 0.82. Decaploid cytotypes, with DNA ratios of 1.0 or higher, could readily be separated from octoploids. The aneuploid F. chiloensis subsp. pacifica with 54 chromosomes had a smaller DNA ratio than other F. chiloensis having 56. Further experimentation linking the DNA ratio with the C value of these strawberry species will be performed. Propagules of these plant accessions in this study are available to researchers for breeding and genetic research.
C1 [Hummer, K. E.; Postman, J. D.; Bassil, N.] ARS, USDA, Natl Clonal Germplasm Repository, Corvallis, OR 97331 USA.
[Nathewet, P.] Maejo Univ, Div Vegetable Technol, Dept Hort, Fac Agr Prod, Sansai, Thailand.
RP Hummer, KE (reprint author), ARS, USDA, Natl Clonal Germplasm Repository, Corvallis, OR 97331 USA.
EM Kim.Hummer@ars.usda.gov
FU US Department of Agriculture, Agricultural Research Service, National
Clonal Germplasm Repository, Corvallis, Oregon [CRIS 5358- 21000- 038-
00D]
FX This research was funded by CRIS 5358- 21000- 038- 00D at the US
Department of Agriculture, Agricultural Research Service, National
Clonal Germplasm Repository, Corvallis, Oregon.
NR 20
TC 2
Z9 2
U1 0
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 169
EP 174
PG 6
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900018
ER
PT S
AU Preece, JE
Smith, JL
AF Preece, J. E.
Smith, J. L.
BE Aradhya, MK
Kluepfel, DA
TI Phenotypic Comparisons between Wild Relatives and Cultivars of
Kiwifruit, Persimmon, Mulberry, and Olive at the National Clonal
Germplasm Repository, Davis, CA
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE Actinidia; Diospyros; Morus; Olea; fruit characteristics; flower
characteristics
AB Phenotypic traits were characterized for 23 wild species and 4 cultivars of 4 clonal fruit crops including, Kiwifruit (Actinidia), Persimmon (Diospyros), Mulberry (Morus) and Olive (Olea). Across all four crops, the wild species varied distinctly, especially when compared with the cultivars. The wild kiwifruit relatives exhibited notable differences in their flower and fruit characteristics such as: anther color, fruit skin color, smaller flower diameter and fruit size, less fruit pubescence, and generally earlier harvest dates. The wild persimmon relatives were diverse in their fruit characteristics and had earlier or later harvest dates than 'Fuyu'. The wild mulberry relatives produced smaller fruit with lower titratable acidity and variable soluble solid content. The wild olive relatives differed chiefly from cultivars in leaf and fruit characteristics including: leaf color, leaf curvature, smaller fruit size, a reduced flesh to pit ratio, and earlier harvest dates.
C1 [Preece, J. E.; Smith, J. L.] Univ Calif Davis, USDA ARS, Davis, CA 95616 USA.
RP Preece, JE (reprint author), Univ Calif Davis, USDA ARS, 1 Shields Ave, Davis, CA 95616 USA.
EM john.preece@ars.usda.gov
NR 3
TC 1
Z9 1
U1 0
U2 2
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 175
EP 179
PG 5
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900019
ER
PT S
AU Postman, JD
Stover, E
Aradhya, MK
Meyer, PW
Williams, KA
AF Postman, J. D.
Stover, E.
Aradhya, M. K.
Meyer, P. W.
Williams, K. A.
BE Aradhya, MK
Kluepfel, DA
TI Recent NPGS Coordinated Expeditions in the Trans-Caucasus Region to
Collect Wild Relatives of Temperate Fruit and Nut Crops
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE germplasm preservation; genebank; center of origin; Armenia; Azerbaijan;
Georgia
AB The USDA Agricultural Research Service-managed National Plant Germplasm System (NPGS) coordinated several germplasm expeditions in the trans-Caucasus countries of Armenia, Azerbaijan, and Georgia beginning in 2001. One of the goals was to preserve valuable wild relatives of crop species ex situ at genebanks in the host countries and in NPGS genebanks in the United States. The Caucasus region is a center of origin for several important temperate fruit and nut crops that are conserved at NPGS facilities in Oregon, New York and California. Seeds and cuttings of landrace cultivars and wild relatives were collected from diverse habitats in accordance with international agreements and national laws. Since 2001, more than 50 unique accessions of Corylus (hazelnut), 20 Cydonia (quince), 23 Mespilus (medlar), 52 Pyrus (pear) and smaller numbers Amelanchier, Crataegus and Sorbus from these three trans-Caucasus nations have been added to the NPGS collections in Corvallis, Oregon. Almost 50 Ficus samples, 125 Juglans, 53 Pistacia, 50 Punica, 70 Vitis and many accessions of various Prunus species went to the genebank in Davis, California. Malus (apple) samples numbered 30 and were deposited at the genebank in Geneva, New York. Established accessions are evaluated for horticultural traits, environmental adaptations and pest resistance, and made available to researchers world-wide for genetic studies and crop improvement.
C1 [Postman, J. D.] ARS, USDA, Natl Clonal Germplasm Repository, Corvallis, OR 97331 USA.
[Stover, E.] US Hort Res Lab, USDA Agr Res Serv, Ft Pierce, FL USA.
[Aradhya, M. K.] Agr Res Serv, USDA, Natl Clonal Germplasm Repository, Davis, CA USA.
[Meyer, P. W.] Univ Penn, Morris Arboretum, Philadelphia, PA 19104 USA.
[Williams, K. A.] Agr Res Serv, USDA, Natl Germplasm Resources Lab, Plant Exchange Off, Beltsville, MD USA.
RP Postman, JD (reprint author), ARS, USDA, Natl Clonal Germplasm Repository, Corvallis, OR 97331 USA.
EM Joseph.Postman@ars.usda.gov
NR 5
TC 1
Z9 1
U1 1
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 191
EP 198
PG 8
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900021
ER
PT S
AU Grauke, LJ
Thompson, TE
Mendoza-Herrera, MA
AF Grauke, L. J.
Thompson, T. E.
Mendoza-Herrera, M. A.
BE Aradhya, MK
Kluepfel, DA
TI Native Walnuts of Texas
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE Juglans; microsatellite markers; interspecific hybrids
ID JUGLANS
AB Three species of Juglans occur naturally in Texas. Eastern Black walnut, J. nigra is found in eastern to central Texas. J. major, the Arizona walnut, is reported in scattered, disjunct populations from central to west Texas. J. microcarpa, the Little walnut, occurs from central to west Texas. Hybrids between all species have been previously reported. Collections were made from several autochthonous populations of each species, some previously undocumented, for the purpose of providing germplasm for use in the NCGR-Davis. Samples were characterized for morphological descriptors of nuts and leaves, revealing considerable overlap between species. DNA was extracted from each individual and evaluated using plastid microsatellite markers developed for use in the sister genus Carya. Of three loci (ccmp2, ntcp40, ntcp9), all of which show polymorphism in Carya, only one (ntcp40) was polymorphic among Texas walnuts. Samples of J. nigra from populations in the eastern U. S. revealed additional alleles for ntcp40, but remained monomorphic at the other loci. Samples of J. regia and J. mandshurica had unique alleles at all three plastid loci. Juglans microcarpa and J. major samples from Texas populations shared three alleles, two of which were the only alleles at the ntcp40 locus found in J. nigra from Texas. Observations are consistent with interspecific hybridization between Texas walnuts. Shell texture was the most convincing indication of hybridity between J. major and J. nigra. Hybrid individuals involving J. microcarpa and its sister species were suspected based on a combination of morphological and molecular characteristics.
C1 [Grauke, L. J.; Thompson, T. E.] USDA ARS, Pecan Genet & Breeding Program, 10200 FM 50, Somerville, TX 77879 USA.
[Mendoza-Herrera, M. A.] Texas A&M Univ, Norman Borlaug Ctr So Crop Improvment, College Stn, TX 77843 USA.
RP Grauke, LJ (reprint author), USDA ARS, Pecan Genet & Breeding Program, 10200 FM 50, Somerville, TX 77879 USA.
EM ljg@tamu.edu
FU National Plant Germplasm System
FX This work was supported by a plant collection grant from the National
Plant Germplasm System. Permission to collect on State of Texas lands
was kindly provided by David Riskind, Natural Resources Program of the
Texas Parks and Wildlife Department. The valuable assistance of Stephan
Hatch and Dale Kruse ( TAMU Tracy Herbarium, College Station, TX) and
Tom Wendt ( The University of Texas Herbarium, Austin, TX)
NR 16
TC 1
Z9 1
U1 0
U2 1
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 199
EP 210
PG 12
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900022
ER
PT S
AU Postman, JD
AF Postman, J. D.
BE Aradhya, MK
Kluepfel, DA
TI Quince (Cydonia oblonga Mill.) Center of Origin Provides Sources of
Disease Resistance
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE Rosaceae; Fabraea; powdery mildew; rust; fire blight
AB Quince is a close relative of apples (Malus sp.) and pears (Pyrus sp.) in the Rosaceae family. It has been cultivated for thousands of years in central Asia and the Middle East for its fruit, and for hundreds of years as a dwarfing rootstock for pears. The USDA-ARS National Clonal Germplasm Repository in Corvallis, Oregon has assembled a diverse living Cydonia collection that includes wild collected accessions, landrace genotypes and named cultivars from the center of origin in the Middle East and Central Asia. One self-rooted tree each of 125 accessions is maintained in a 1 hectare orchard. Trees were evaluated annually from 2006 to 2010 for incidence of naturally occurring diseases including Fabraea leaf and fruit spot (Diplocarpon mespili (Sorauer) B. Sutton (=Fabraea maculata)), powdery mildew (Podosphaera sp.), rust (Gymnosporangium sp.) and fire blight (Erwinia amylovora (Burrill) Winslow et al). A standard rating system of 1 (no disease) to 9 (severe symptoms) was used for all diseases. No fungicides were applied to trees. Fabraea leaf spot is prevalent most years at the site and plant response ranged from highly susceptible to resistant. Rust and powdery mildew occurred in some years when environmental conditions were suitable. Fire blight infections were not common and strikes were removed when observed. Many quince clones exhibited resistance to individual fungal pathogens. Several selections including `Limon' from Turkey, TE-2-73 and 'Rannyaya Tange' from Turkmenistan, and 'Kuganskaya' from Ukraine exhibited resistance to all three fungal diseases. The NPGS quince collection, with diverse representation that includes much of Cydonia's natural wild and cultivated distribution, is an important source of genes for adaptation to the diseases that attack this crop.
C1 ARS, USDA, Corvallis, OR 97331 USA.
RP Postman, JD (reprint author), ARS, USDA, Corvallis, OR 97331 USA.
EM Joseph.Postman@ars.usda.gov
NR 7
TC 0
Z9 0
U1 0
U2 4
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 229
EP 234
PG 6
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900026
ER
PT S
AU Ehlenfeldt, MK
Ballington, JR
AF Ehlenfeldt, M. K.
Ballington, J. R.
BE Aradhya, MK
Kluepfel, DA
TI Vaccinium Species of Section Hemimyrtillus - Their Value to Cultivated
Blueberry and Approaches to Utilization
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE Vaccinium padifolium; V. cylindraceum; V. arctostaphylos; V. smallii; V.
yakushimense; V. hirtum
AB Blueberries in commercial production represent several diverse Vaccinium species. Moreover, significant use has been made of the secondary gene pool of Vaccinium, especially in the development of southern highbush cultivars. Section Hemimyrtillus represents species that are part of the tertiary gene pool of Vaccinium. Two species of Section Hemimyrtillus, native to the Portuguese islands of Madeira (V. padifolium Smith), and the Azores (V. cylindraceum Smith) have features of notable value to conventional blueberry development, among these: upright structure, strong growth, abundant flowering and fruiting, good self-fertility, acceptable fruit quality, inflorescence structure suited to mechanical harvesting, and repeat flowering. Among these two species, one is deciduous and one evergreen. Vaccinium arctostaphylos L., a native of the Caucasus region, is closely allied to V. padifolium, hybridizes freely with it, and has many similar characters, and has greater cold hardiness. Initial progress has been made at incorporating these species into forms compatible with V. corymbosum-based blueberry cultivars, and further evaluations are being made of both parental material and the derived hybrids.
C1 [Ehlenfeldt, M. K.] ARS, USDA, Philip E Marucci Ctr Blueberry & Cranberry Res &, Chatsworth, NJ 08019 USA.
[Ballington, J. R.] North Carolina State Univ, Dept Hort Sci, Raleigh, NC 27695 USA.
RP Ehlenfeldt, MK (reprint author), ARS, USDA, Philip E Marucci Ctr Blueberry & Cranberry Res &, Chatsworth, NJ 08019 USA.
EM mark.ehlenfeldt@ars.usda.gov
NR 11
TC 0
Z9 0
U1 0
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 243
EP 252
PG 10
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900028
ER
PT S
AU Greene, SL
AF Greene, S. L.
BE Aradhya, MK
Kluepfel, DA
TI Fruit and Nut Crop Wild Relatives in the United States: a Surprisingly
Rich Resource
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE germplasm; genetic resources; native species; naturalized; horticultural
crops; North America; conservation
ID INTERSPECIFIC HYBRIDIZATION; IMPROVEMENT; HYBRIDS
AB When early settlers arrived in the United States they were struck by the many fruits and nuts they recognized, including grapes (Vitis), plums and cherries (Prunus), strawberries (Fragaria), currents (Ribes), blueberries and cranberries (Vaccinium), wild chestnuts (Castanea), filberts (Corylus), and walnuts (Juglans). Native fruit and nut crop wild relatives were an important genetic resource in establishing early commercial production. Today we tend to forget the many native and naturalized plants in the United States that are important crop wild relatives (CWR). Developing a national strategy would be prudent with a national inventory being a logical starting point. We discuss the development of a U. S. CWR inventory that covered crops used for food, fiber, forage, medicine, esthetics, restoration and timber. The preliminary inventory contained over 2600 entries. A total of 364 CWR taxa were useful for breeding 65 different crops. Fifty five percent of these CWR taxa were potential resources for fruit and nut improvement. Many of these fruit and nut CWR have been used extensively by breeders and have contributed important traits such as disease and insect resistance and abiotic stress tolerance. Native species of Vitis, Juglans, and Prunus are important rootstocks. Although germplasm collections exist, we need to revisit our efforts to conserve the native and naturalized germplasm in our own back yard. A comprehensive national CWR inventory will help us focus on setting priorities and developing a national strategy to conserve these important genetic resources to ensure their use in the future.
C1 ARS, USDA, Prosser, WA 99350 USA.
RP Greene, SL (reprint author), ARS, USDA, Prosser, WA 99350 USA.
EM stephanie.greene@ars.usda.gov
NR 35
TC 1
Z9 1
U1 1
U2 5
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 263
EP 269
PG 7
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900030
ER
PT S
AU Wiersema, JH
Leon, B
Garvey, EJ
AF Wiersema, J. H.
Leon, B.
Garvey, E. J.
BE Aradhya, MK
Kluepfel, DA
TI Identifying Wild Relatives of Subtropical and Temperate Fruit and Nut
Crops
SO I INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE
FRUIT AND NUT CROPS
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 1st International Symposium on Wild Relatives of Subtropical and
Temperate Fruit and Nut Crops
CY MAR 19-23, 2011
CL Davis, CA
SP Int Soc Hort Sci (ISHS)
DE GRIN; NPGS; taxonomy; hybridization; genetic-relative; gene-pool;
taxon-group
ID DNA-SEQUENCES; RIBOSOMAL DNA; NUCLEAR; CUCURBITACEAE; PHYLOGENETICS;
CUCUMIS
AB In 2008 the Plant Exchange Office (PEO) of the Agricultural Research Service began a concentrated effort to identify, classify, and provide a full treatment in the taxonomy area of the Germplasm Resources Information Network (GRIN) for all primary, secondary, and tertiary genetic wild relatives (CWR) of the major and minor crops represented in the National Plant Germplasm System (NPGS). This ongoing project aims to provide an information tool useful to PEO and others in NPGS to assist in evaluating germplasm needs and assessing acquisition opportunities. With an initial focus on major agronomic and vegetable crops in the U. S. A., some 50 of which have been completed to date, we have recently turned our attention to fruit and nut crops. This created the need to identify graft-stock relatives as well. A discussion of the assumptions underlying this classification and our methodology for identifying and documenting CWR of various crops is provided. Online access to our data will soon be available to allow GRIN Taxonomy users to review our results. A web form currently provides the capability for NPGS workers to query crop relatives by crop name, taxonomy, genetic relative status, geographical distribution, and NPGS germplasm site.
C1 [Wiersema, J. H.; Leon, B.; Garvey, E. J.] ARS, USDA, Natl Germplasm Resources Lab, Plant Exchange Off,Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
RP Wiersema, JH (reprint author), ARS, USDA, Natl Germplasm Resources Lab, Plant Exchange Off,Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
EM jwiersema@ars-grin.gov
NR 10
TC 4
Z9 4
U1 0
U2 0
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66052-56-7
J9 ACTA HORTIC
PY 2012
VL 948
BP 285
EP 288
PG 4
WC Agronomy; Horticulture
SC Agriculture
GA BDG59
UT WOS:000313126900033
ER
PT J
AU Wolski, A
Henry, TJ
AF Wolski, Andrzej
Henry, Thomas J.
TI Revision of the New World Species of Peritropis Uhler (Heteroptera:
Miridae: Cylapinae)
SO INSECT SYSTEMATICS & EVOLUTION
LA English
DT Article
DE Hemiptera; new species; taxonomy; revision; Nearctic; Neotropics; keys
ID HEMIPTERA-HETEROPTERA; REGION HEMIPTERA; ANNOTATED LIST; PLANT BUGS;
RECORDS; GENUS
AB The New World species of the genus Peritropis are revised, and 17 new species are described: P. amazonica, P. amphicyrta, P. carpinteroi, P. carvalhoi, P. conspersa, P. cornata, P. gorczycai, P. guarani, P. izyai, P. marmorea, P. nicaraguensis. P. plaumanni, P. schaffneri, P. scutellata, P. stobieckii, P. turrialba and P. venezuelaensis. All previously known species from the New World (P. husseyi Knight, P saldaeformis Uhler, and P. tuberculata McAtee and Malloch) are redescribed, except P. unicolor Carvalho and Rosas for which an English translation of the original description is provided. Illustrations of the male genitalia, a color photograph of the adult of each species, scanning electron micrographs of selected structures of Peritropis husseyi, P. saldaeformis and P. turrialba, and a key to species are provided.
C1 [Wolski, Andrzej] Opole Univ, Dept Biosystemat, PL-45052 Opole, Poland.
[Henry, Thomas J.] ARS, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, Washington, DC USA.
RP Wolski, A (reprint author), Opole Univ, Dept Biosystemat, Oleska 22, PL-45052 Opole, Poland.
EM andrzej.wolski@uni.opole.pl
NR 58
TC 13
Z9 15
U1 0
U2 3
PU BRILL ACADEMIC PUBLISHERS
PI LEIDEN
PA PLANTIJNSTRAAT 2, P O BOX 9000, 2300 PA LEIDEN, NETHERLANDS
SN 1399-560X
EI 1876-312X
J9 INSECT SYST EVOL
JI Insect Syst. Evol.
PY 2012
VL 43
IS 3-4
BP 213
EP 270
DI 10.1163/1876312X-04303002
PG 58
WC Evolutionary Biology; Entomology
SC Evolutionary Biology; Entomology
GA 059ZZ
UT WOS:000312745700002
ER
PT J
AU Ustin, SL
Riano, D
Hunt, ER
AF Ustin, Susan L.
Riano, David
Hunt, E. Raymond, Jr.
TI Estimating canopy water content from spectroscopy
SO ISRAEL JOURNAL OF PLANT SCIENCES
LA English
DT Article
DE water absorption features; spectral features; imaging spectroscopy;
spectral indexes; radiative transfer models
ID FUEL MOISTURE-CONTENT; PHOTOCHEMICAL REFLECTANCE INDEX; LIGHT
INTERACTION-MODEL; REMOTE-SENSING DATA; FOREST-FIRE DANGER; DRY-MATTER
CONTENT; LANDSAT TM DATA; VEGETATION WATER; SPECTRAL REFLECTANCE;
OPTICAL-PROPERTIES
AB Canopy water content is a dynamic quantity that depends on the balance between water losses from transpiration and water uptake from the soil. Absorption of short-wave radiation by water is determined by various frequencies that match overtones of fundamental bending and stretching molecular transitions. Leaf water potential and relative water content are important variables for determining water deficit and drought effects; however, these variables may only be indirectly estimated from leaf and canopy spectral reflectance. We review the state of understanding in remote sensing measurements of leaf equivalent water thickness and canopy water content. Indexes using different combinations of spectral bands estimate leaf and canopy water contents, albeit sometimes with large errors caused by differences in canopy structure and soil surface reflectance. Inversion of leaf and canopy radiative transfer models, such as PROSPECT and SAIL, or learning algorithms, like artificial neural networks and genetic algorithms trained on radiative transfer models, are promising methods for creating global datasets of canopy water content.
C1 [Ustin, Susan L.; Riano, David] Univ Calif Davis, Davis, CA 95616 USA.
[Riano, David] CSIC, Ctr Ciencias Humanas & Sociales, Madrid 28037, Spain.
[Hunt, E. Raymond, Jr.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
RP Ustin, SL (reprint author), Univ Calif Davis, Davis, CA 95616 USA.
EM slustin@ucdavis.edu
RI Riano, David/C-9663-2013
OI Riano, David/0000-0002-0198-1424
NR 129
TC 12
Z9 12
U1 3
U2 50
PU SCIENCE FROM ISRAEL-DIVISION OF LASER PAGES PUBL LTD
PI JERUSALEM
PA PO BOX 34299, JERUSALEM 91341, ISRAEL
SN 0792-9978
J9 ISR J PLANT SCI
JI Isr. J. Plant Sci.
PY 2012
VL 60
IS 1-2
BP 9
EP 23
DI 10.1560/IJPS.60.1-2.9
PG 15
WC Plant Sciences
SC Plant Sciences
GA 060JO
UT WOS:000312773500002
ER
PT S
AU Barth, MM
Zhuang, H
Li, J
Song, W
Zhao, J
Zhang, L
Lu, W
AF Barth, M. M.
Zhuang, H.
Li, J.
Song, W.
Zhao, J.
Zhang, L.
Lu, W.
BE Toivonen, PMA
Mattheis, JP
Rudell, DR
TI Postharvest Color and Texture Retention in Organic Chinese Red Raspberry
and Sea-Buckthorn Fruit during Modified Atmosphere Storage
SO IV INTERNATIONAL CONFERENCE POSTHARVEST UNLIMITED 2011
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 4th International Conference on Postharvest Unlimited
CY MAY 22-26, 2011
CL Leavenworth, WA
SP Int Soc Hort Sci (ISHS)
DE organic; small fruit; raspberry; sea-buckthorn; modified atmosphere
packaging; quality
AB Color and texture are among the key quality attributes for small fruit. Approaches such as modified atmosphere packaging (MAP) along with cold chain management have been shown to support retention of fruit quality during handling and distribution. The objective of this study was to investigate the effects of various modified environments on retention of quality attributes of Chinese organic red raspberry (Rubus idaeus L.) and sea-buckthorn (Hippophae rhamnoides L.) fruit from northeast China. Fruit were harvested, cooled and sorted for quality prior to being weighed into vented clamshell containers and placed into three experimental groups using bags of varying oxygen transmission rates (OTR): 160 OTR bags, 525 OTR bags, or air control and stored over 10 days (10 degrees C). Atmospheric composition was confirmed by headspace analysis, and retention of fruit quality attributes was measured by color (L*, a*, b* values), texture (cohesiveness, springiness), total soluble solids (TSS), pH, and moisture content at regular intervals. O-2 content was similar to 2% at steady state conditions inside the 160 OTR trays for both raspberry and sea-buckthorn fruit. However, the O-2 levels inside the 525 OTR trays were 12% for raspberry and higher for sea-buckthorn (16%). CO2 levels were similar inside the 160 OTR trays for both fruit (18-20%), however slightly lower in the 525 OTR sea-buckthorn trays (4 vs. 5%). Improved color retention was shown in MAP-stored raspberry fruit. Better retention of cohesiveness and springiness were observed in MAP-treated raspberry fruit with slightly better results noted in lower OTR. No differences noted for sea-buckthorn fruit texture. MAP resulted in improved moisture retention and lower TSS vs. control in both fruit. Overall MAP improved quality retention of Chinese, organic raspberry and sea-buckthorn fruit.
C1 [Barth, M. M.] Responsible Source Ltd, FSHN, UIUC, Lake Forest, IL USA.
[Zhuang, H.] USDA, ARS, Russell Res Ctr, Athens, GA USA.
[Li, J.; Song, W.; Zhao, J.; Zhang, L.; Lu, W.] Harbin Inst Technol, Harbin, Heilongjiang, Peoples R China.
RP Barth, MM (reprint author), Responsible Source Ltd, FSHN, UIUC, Lake Forest, IL USA.
NR 13
TC 1
Z9 1
U1 1
U2 7
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66051-60-7
J9 ACTA HORTIC
PY 2012
VL 945
BP 45
EP 50
PG 6
WC Agronomy; Horticulture
SC Agriculture
GA BDG56
UT WOS:000313124900004
ER
PT S
AU Whitaker, BD
AF Whitaker, B. D.
BE Toivonen, PMA
Mattheis, JP
Rudell, DR
TI Membrane Lipid Metabolism and Oxidative Stress Involved in Postharvest
Ripening, Senescence, and Storage Disorders of Fruits
SO IV INTERNATIONAL CONFERENCE POSTHARVEST UNLIMITED 2011
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 4th International Conference on Postharvest Unlimited
CY MAY 22-26, 2011
CL Leavenworth, WA
SP Int Soc Hort Sci (ISHS)
DE alpha-farnesene; apple; ethylene; lipoxygenase; melon; pear;
phospholipase D; phospholipid catabolism; phytosterol conjugation;
superficial scald; tomato
ID SUPERFICIAL SCALD DEVELOPMENT; PHOSPHOLIPASE D-ALPHA; GRANNY-SMITH
APPLES; BELL PEPPER FRUIT; TOMATO FRUIT; PHOSPHATIDIC-ACID; MUSKMELON
FRUIT; PLASMA-MEMBRANE; STORED APPLES; LIPOXYGENASE ACTIVITY
AB Loss of membrane function resulting from lipid catabolism and peroxidation has long been associated with natural and stress-induced senescence of plant organs. Phospholipase D (PLD) and lipoxygenase (LOX) are two key enzymes in the proposed senescence cascade of phospholipid catabolism, the former initiating the process and the latter generating hydroperoxides from free di- and tri-enoic fatty acids. Aside from their deleterious effects on membrane structure, both PLD and LOX are now known to constitute large gene families that play an integral role in responses to biotic and abiotic stress via generation of lipid messengers and defense compounds. Another, less studied change in membrane structure associated with stress responses in plants is a redistribution of phytosterols among free and conjugated pools. Steryl glucosides (SG) and acylated steryl glucosides (ASG), in addition to free sterols (FS), are ubiquitous in plant tissues. Often a marked shift in the relative abundance of FS, SG, and ASG in cell membranes occurs in response to various types of stress, presumably altering physical properties and function. Undoubtedly the most important process contributing to membrane dysfunction and stress disorder development in stored produce is peroxidation of structural lipids by oxyradicals. Production of reactive oxygen species (ROS) is an inherent part of aerobic respiration and metabolism, and also plays a critical role in cell signaling cascades. Plant cells possess an array of antioxidant metabolites and antioxidative enzymes to keep ROS in check. However, under prolonged or severe oxidative stress these defenses are overwhelmed, allowing runaway free radical reactions and consequent degradation of lipids, proteins, and nucleic acids. Superficial scald of apple and pear fruits is a good example of a postharvest physiological disorder involving oxidative stress induced by long-term cold storage. The roles of PLD and LOX, sterol conjugation, and oxidative stress in the postharvest life of several fruits are discussed.
C1 ARS, Food Qual Lab, Beltsville Agr Res Ctr, USDA, Beltsville, MD USA.
RP Whitaker, BD (reprint author), ARS, Food Qual Lab, Beltsville Agr Res Ctr, USDA, Beltsville, MD USA.
NR 102
TC 1
Z9 2
U1 3
U2 17
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66051-60-7
J9 ACTA HORTIC
PY 2012
VL 945
BP 269
EP 282
PG 14
WC Agronomy; Horticulture
SC Agriculture
GA BDG56
UT WOS:000313124900036
ER
PT S
AU Smilanick, JL
Gabler, FM
Margosan, DA
AF Smilanick, J. L.
Gabler, F. Mlikota
Margosan, D. A.
BE Toivonen, PMA
Mattheis, JP
Rudell, DR
TI Evaluation under Commercial Conditions of the Application of Continuous,
Low Concentrations of Ozone during the Cold Storage of Table Grapes
SO IV INTERNATIONAL CONFERENCE POSTHARVEST UNLIMITED 2011
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 4th International Conference on Postharvest Unlimited
CY MAY 22-26, 2011
CL Leavenworth, WA
SP Int Soc Hort Sci (ISHS)
DE Vitis vinifera; gray mold; Botrytis cinerea; produce packaging
ID DECAY
AB Botrytis cinerea causes gray mold, a postharvest disease of table grapes. The ability of ozone (O-3) in air to inhibit gray mold in stored grapes was reported in chamber studies, but O-3 needed evaluation under commercial conditions. O-3 merits attention because it is pesticide-residue free and allowed as "organic" by the USDA National Organic Program. Tests were conducted at three commercial facilities using pallets of 'Flame Seedless', 'Thompson Seedless', and 'Princess Seedless' grapes in uncoated, corrugated fiberboard boxes containing grapes in ventilated cluster bags or hard plastic clamshell containers. Grape berries inoculated with B. cinerea were placed within grape clusters at the beginning of storage. After cold storage, the spread of infection, natural incidence of decay, and cluster appearance were evaluated. After initial pre-cooling in air, grapes were stored at -0.5 to 3 degrees C with a day/night cycle of 100 ppb O-3 (day) and 300 ppb O-3 (night) for 5 to 8 weeks. At each exam, six 9-kg boxes with 9 cluster bags or 4 clamshell containers were examined. The mean number for all tested cultivars of berries adjacent to inoculated berries that became infected by the end of storage was 0.8 in the O-3 atmosphere compared to 3.1 among those in air. The mean percentage for all tested cultivars of naturally decayed berries at this time in O-3 was 2.4% compared to 5.8% among those in air. Cluster appearance was not harmed and storage life was extended by 2 to 3 weeks by O-3. The uncoated, paper fiber corrugated boxes used in these tests reduced O-3 diffusion into them more than coated corrugated fiberboard, expanded polystyrene, or corrugated plastic boxes. Selection of packaging that maximizes O-3 concentrations within packages should improve control of gray mold.
C1 [Smilanick, J. L.; Gabler, F. Mlikota; Margosan, D. A.] ARS, San Joaquin Agr Sci Ctr, USDA, Parlier, CA 93648 USA.
RP Smilanick, JL (reprint author), ARS, San Joaquin Agr Sci Ctr, USDA, 9611 S Riverbend Ave, Parlier, CA 93648 USA.
NR 8
TC 1
Z9 1
U1 0
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66051-60-7
J9 ACTA HORTIC
PY 2012
VL 945
BP 357
EP 361
PG 5
WC Agronomy; Horticulture
SC Agriculture
GA BDG56
UT WOS:000313124900048
ER
PT S
AU Obenland, D
Arpaia, ML
AF Obenland, D.
Arpaia, M. L.
BE Toivonen, PMA
Mattheis, JP
Rudell, DR
TI Variability in Waxing-Induced Ethanol and Aroma Volatile Production
among Mandarin Genotypes
SO IV INTERNATIONAL CONFERENCE POSTHARVEST UNLIMITED 2011
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 4th International Conference on Postharvest Unlimited
CY MAY 22-26, 2011
CL Leavenworth, WA
SP Int Soc Hort Sci (ISHS)
DE ester; aldehyde; citrus; coating; anaerobic; headspace
ID OFF-FLAVOR VOLATILES; SENSORY QUALITY; MOR MANDARINS; STORAGE; COATINGS;
GRAPEFRUIT; METABOLISM; EMISSION; HYBRIDS; TASTE
AB Mandarins often develop off-flavors during storage that impact consumer acceptance and it would be useful to develop mandarin cultivars that are less susceptible to postharvest flavor loss. Ethanol has long been identified as being a compound identified with flavor loss in citrus. A range of diverse mandarin genotypes were screened for their ability to produce ethanol in response to both waxing and storage or a 2-h exposure to nitrogen gas and were found to differ greatly in ethanol content both at harvest and after treatment. Headspace measurements of intact fruit were not predictive of internal juice ethanol concentrations and exposure to nitrogen did not accurately mimic the effect of waxing and storage on ethanol accumulation. High ethanol production was associated with enhanced accumulation of other alcohols and esters that likely influence flavor. Screening for ethanol production could potentially identify mandarin genotypes that differ in the propensity to produce off-flavor volatiles and aid in better understanding the relationship between ethanol production and aroma volatile accumulation.
C1 [Obenland, D.] USDA, San Joaquin Agr Sci Ctr, Parlier, CA 93648 USA.
[Arpaia, M. L.] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA.
RP Obenland, D (reprint author), USDA, San Joaquin Agr Sci Ctr, Parlier, CA 93648 USA.
NR 10
TC 3
Z9 3
U1 0
U2 1
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66051-60-7
J9 ACTA HORTIC
PY 2012
VL 945
BP 405
EP 411
PG 7
WC Agronomy; Horticulture
SC Agriculture
GA BDG56
UT WOS:000313124900055
ER
PT S
AU Zhu, YM
Curry, E
Mattheis, JP
Varanasi, V
Zheng, P
AF Zhu, Yanmin
Curry, E.
Mattheis, J. P.
Varanasi, V.
Zheng, Ping
BE Toivonen, PMA
Mattheis, JP
Rudell, DR
TI Identification of Differentially Expressed Genes Potentially Associated
with Apple (Malus xdomestica) Superficial Scald Development
SO IV INTERNATIONAL CONFERENCE POSTHARVEST UNLIMITED 2011
SE Acta Horticulturae
LA English
DT Proceedings Paper
CT 4th International Conference on Postharvest Unlimited
CY MAY 22-26, 2011
CL Leavenworth, WA
SP Int Soc Hort Sci (ISHS)
DE physiological disorders; postharvest quality; oxidative metabolism;
suppressive subtraction hybridization; gene expression
ID ALPHA-FARNESENE; STORED APPLES; FUNCTIONAL DISORDER; CORTLAND APPLES;
FRUIT; DIPHENYLAMINE; OXIDATION; RESPONSES; MATURITY; ETHYLENE
AB Apple superficial scald is a recurring postharvest physiological disorder with significant economic impact. Elucidating the molecular mechanisms of apple scald development is essential for prediction and prevention. In this study, differentially expressed genes were identified using suppressive subtraction hybridization (SSH) for two types of apple peel samples, i.e., between healthy tissues and tissues with initial scald symptoms. The most apparent up-regulated genes in tissue showing initial scald symptoms were those encoding proteins functioning in oxidative metabolism, including lipoxygenase, oxidoreductase, and polyphenol oxidase. This result is consistent with the hypothesis that development of apple scald is associated with an imbalance in oxidative metabolism. Several pathogenesis-related (PR) proteins encoding genes were also up-regulated, including apple allergens mal d 1/PR protein 10, apple allergens mal d 3/PR protein 14, PR protein 5 and PR-protein 8 in the tissues with initial scald symptoms. Other up-regulated genes included those encoding transporter proteins such as acyl carrier protein, peptide transporter and putative ABC transporter. Also induced were several proteins related to stress responses including heat shock protein, osmotin-like protein and early-response to dehydration protein. Up to 30% of the identified genes were annotated as "unknown function" and or "hypothetical proteins".
C1 [Zhu, Yanmin; Curry, E.; Mattheis, J. P.] ARS, USDA, Tree Fruit Res Lab, Wenatchee, WA 98801 USA.
[Varanasi, V.; Zheng, Ping] Washington State Univ, Dept Hort & Landscape Architecture, Pullman, WA 99164 USA.
RP Zhu, YM (reprint author), ARS, USDA, Tree Fruit Res Lab, Wenatchee, WA 98801 USA.
NR 25
TC 0
Z9 0
U1 0
U2 3
PU INT SOC HORTICULTURAL SCIENCE
PI LEUVEN 1
PA PO BOX 500, 3001 LEUVEN 1, BELGIUM
SN 0567-7572
BN 978-90-66051-60-7
J9 ACTA HORTIC
PY 2012
VL 945
BP 441
EP 449
PG 9
WC Agronomy; Horticulture
SC Agriculture
GA BDG56
UT WOS:000313124900060
ER
PT J
AU Rachal, DM
Monger, HC
Okin, GS
Peters, DC
AF Rachal, David M.
Monger, H. Curtis
Okin, G. S.
Peters, Debra C.
TI Landform influences on the resistance of grasslands to shrub
encroachment, Northern Chihuahuan Desert, USA
SO JOURNAL OF MAPS
LA English
DT Article
DE arid geomorphology; shrub encroachment; grassland resistance;
desertification; Chihuahuan Desert
ID NEW-MEXICO; OVERLAND-FLOW; VEGETATION; SOIL; ECOSYSTEMS; SCALE;
DESERTIFICATION; MANAGEMENT; NUTRIENTS; DYNAMICS
AB In arid and semiarid regions, vegetative boundaries are often strikingly similar to landform boundaries. However, it is not well documented whether landforms exert an influence on the resistance of desert grassland to shrub encroachment. Dominant grassland communities have been displaced by woody shrubs over the last 150 years in the Jornada Basin, southern New Mexico. Digital vegetation maps from 1858, 1915-1916, 1928-1929, 1938, and 1998, in conjunction with a detailed landform map, were analyzed in a Geographical Information System. The generated time series maps and spatial data compiled from these datasets were used to quantify the extent and rate that grasslands were replaced by shrubs on eight contiguous landforms. From this assessment, we generated a resistance index that revealed desert grasslands were least resistant (most susceptible) to shrub expansion on sandy landforms and bajadas and most resistant to shrub invasion on ephemerally flooded playas. This study demonstrates that landforms both provide the broad-scale background for detailed mechanistic studies and affect the sensitivity of grasslands to shrub encroachment.
C1 [Rachal, David M.; Monger, H. Curtis] New Mexico State Univ, Dept Plant & Environm Sci, Las Cruces, NM 88003 USA.
[Okin, G. S.] Univ Calif Los Angeles, Dept Geog, Los Angeles, CA 90024 USA.
[Peters, Debra C.] USDA ARS, Las Cruces, NM USA.
RP Rachal, DM (reprint author), New Mexico State Univ, Dept Plant & Environm Sci, Las Cruces, NM 88003 USA.
EM D.Rachal@gmail.com
FU Jornada Basin LTER program (National Science Foundation) [DEB-0080412];
New Mexico State University-Agricultural Experiment Station
FX We thank Peg Gronenymer, and Barbara Nolen for their assistance in data
retrieval, and comments on map design and layout. We also appreciate the
anonymous reviewers for their comments on this manuscript and the map.
Funding for this study was provided by the Jornada Basin LTER program
(National Science Foundation DEB-0080412) and the New Mexico State
University-Agricultural Experiment Station.
NR 35
TC 3
Z9 3
U1 1
U2 23
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1744-5647
J9 J MAPS
JI J. Maps
PY 2012
VL 8
IS 4
BP 507
EP 513
DI 10.1080/17445647.2012.727593
PG 7
WC Geography; Geography, Physical
SC Geography; Physical Geography
GA 064KQ
UT WOS:000313074200026
ER
PT J
AU Duke, SH
Vinje, MA
Henson, CA
AF Duke, Stanley H.
Vinje, Marcus A.
Henson, Cynthia A.
TI Comparisons of Amylolytic Enzyme Activities and beta-Amylases with
Differing Bmy1 Intron III Alleles to Sugar Production During Congress
Mashing With North American Barley Cultivars
SO JOURNAL OF THE AMERICAN SOCIETY OF BREWING CHEMISTS
LA English
DT Article
DE alpha-Amylase; beta-Amylase; Bmy1 Intron III alleles; Limit dextrinase;
Mashing; Wort sugars
ID HORDEUM-VULGARE L.; PISUM-SATIVUM-L; SINGLE NUCLEOTIDE POLYMORPHISMS;
MALT QUALITY MEASUREMENTS; DIASTATIC POWER ENZYMES; ALPHA-AMYLASE; LIMIT
DEXTRINASE; OSMOLYTE CONCENTRATION; STARCH DEGRADATION; GERMINATED
BARLEY
AB This study was conducted to determine the relationships between patterns of activity of malt amylolytic enzymes (alpha-amylase, beta-amylase, and limit dextrinase) and sugar production in two- and six-row North American cultivars over the course of Congress mashing and to test two hypotheses: 1) that maximal activity of and rates of increase in beta-amylase activity during the initial phases of mashing would correlate better than the other amylolytic enzymes with sugar production and 2) that beta-amylase intron III allelic variation would have little to no association with sugar production during mashing. Malts of twelve barley cultivars were mashed in a micro-masher and assayed for amylolytic enzyme activities and sugar levels at 6 time points during the 115 min mashing regime. Peak activities of beta-amylase were positively and significantly correlated with wort total sugars (r = 0.704, P = 0.011), glucose (r = 0.654, P = 0.021), and maltose (r = 0.780, P = 0.003) and negatively and significantly correlated with maltotetraose (r = -0.830, P = 0.001) and maltopentaose (r = -0.767, P = 0.004). In contrast, with the same comparisons, there were no significant correlations with wort total sugars for a-amylase and limit dextrinase and only a-amylase significantly correlated with some individual sugars (glucose, r = 0.611, P = 0.035; maltotriose, r = 0.594, P = 0.042; maltotetraose, r = -0.772, P = 0.003; maltopentaose, r = -0.728, P = 0.007). Correlations of rates of change in beta-amylase activity from five min to the time of maximal activity versus rates of change in total sugars and individual sugars revealed positive and significant correlations with wort total sugars (r = 0.794, P = 0.002), maltose (r = 0.851, P = 0.0004), and maltotriose (r = 0.605, P = 0.038) and significantly negatively correlated with maltotetraose (r = 0.663, P = 0.019) and maltopentaose (r = -0.677, P = 0.016). In contrast, with the same comparisons, there were no significant correlations with wort total sugars or individual sugars versus a-amylase or limit dextrinase. Least significant difference (LSD) analysis revealed that there was no consistent pattern in total wort sugars and the most and least abundant wort sugars and maltodextrins produced during mashing amongst cultivars with Bmy1.a or Bmy1.b intron III alleles. There were no significant differences in cultivars with Bmy1.a or Bmy1.b intron III alleles producing the highest levels of total wort sugars early in mashing, when the bulk of total sugars are produced, (1st 30 min: Bmy1.a [Legacy, Tradition]; Bmy1.b [Harrington]) and at the end of mashing (Bmy1.a [Legacy, Pinnacle, Tradition]; Bmy1.b [Harrington, Merit]). This study supports both of the proposed hypotheses.
C1 [Duke, Stanley H.; Henson, Cynthia A.] Univ Wisconsin, Dept Agron, Madison, WI 53706 USA.
[Vinje, Marcus A.; Henson, Cynthia A.] USDA ARS, Cereal Crops Res Unit, Madison, WI USA.
RP Duke, SH (reprint author), Univ Wisconsin, Dept Agron, 1575 Linden Dr, Madison, WI 53706 USA.
EM shduke@wisc.edu
FU American Malting Barley Association, Inc.; USDA-ARS, USDA-CREES US
Barley Genome Project Special Grant
FX Financial support was provided by the American Malting Barley
Association, Inc. and the USDA-ARS, USDA-CREES US Barley Genome Project
Special Grant. We thank Charles B. Karpelenia and Joseph T. Dietrich for
their expert technical assistance, Allen D. Budde for provision of malt
used in this study, and Michael J. Edney for providing information on
the history of Canadian malt quality measurements by the Canadian Grain
Commission.
NR 107
TC 6
Z9 6
U1 0
U2 13
PU AMER SOC BREWING CHEMISTS INC
PI ST PAUL
PA 3340 PILOT KNOB RD, ST PAUL, MN 55121-2097 USA
SN 0361-0470
J9 J AM SOC BREW CHEM
JI J. Am. Soc. Brew. Chem.
PY 2012
VL 70
IS 4
BP 230
EP 248
DI 10.1094/ASBCJ-2012-0906-01
PG 19
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 058IZ
UT WOS:000312628600002
ER
PT S
AU Rosenberg, IH
AF Rosenberg, Irwin H.
BE Bhutta, ZA
Hurrell, RF
Rosenberg, IH
TI Discussion on Folate and Vitamin B-12 Importance in Cognitive
Development
SO MEETING MICRONUTRIENT REQUIREMENTS FOR HEALTH AND DEVELOPMENT
SE Nestle Nutrition Institute Workshop Series
LA English
DT Proceedings Paper
CT 70th Nestle-Nutrition-Institute Workshop
CY MAR 27-30, 2011
CL Cebu, PHILIPPINES
SP Nestle Nutr Inst
C1 Tufts Univ, Nutr & Neurocognit Lab, Jean Mayer USDA HNRCA, Boston, MA 02111 USA.
RP Rosenberg, IH (reprint author), Tufts Univ, Nutr & Neurocognit Lab, Jean Mayer USDA HNRCA, 711 Washington St, Boston, MA 02111 USA.
EM irwin.rosenberg@tufts.edu
NR 0
TC 0
Z9 0
U1 0
U2 0
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1664-2147
BN 978-3-318-02111-0
J9 NESTLE NUTR WORKS SE
PY 2012
VL 70
BP 172
EP 174
PG 3
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA BDF63
UT WOS:000313025200022
PM 25825306
ER
PT S
AU Allen, LH
AF Allen, Lindsay H.
BE Bhutta, ZA
Hurrell, RF
Rosenberg, IH
TI Pros and Cons of Increasing Folic Acid and Vitamin B-12 Intake by
Fortification
SO MEETING MICRONUTRIENT REQUIREMENTS FOR HEALTH AND DEVELOPMENT
SE Nestle Nutrition Institute Workshop Series
LA English
DT Proceedings Paper
CT 70th Nestle-Nutrition-Institute Workshop
CY MAR 27-30, 2011
CL Cebu, PHILIPPINES
SP Nestle Nutr Inst
ID NEURAL-TUBE DEFECTS; UNITED-STATES; COGNITIVE IMPAIRMENT; TOTAL
HOMOCYSTEINE; FOLATE-DEFICIENCY; GRAIN PRODUCTS; SERUM FOLATE; BLOOD
FOLATE; PREVALENCE; PLASMA
AB There is no doubt that folic acid fortification can be effective for reducing the incidence of neural tube defects. The degree of efficacy depends on both the level of folate depletion and other, yet to be fully characterized, genetic and/or environmental factors. This article summarizes briefly data on neural tube defect reduction and other benefits of folic acid fortification as these have been reviewed in more detail elsewhere. More attention is drawn to questions that have been raised about the possible adverse effects of folic acid fortification including the incidence of colorectal cancer and immune function. The main question addressed here is whether folic acid fortification can exacerbate the adverse effects of vitamin B12 deficiency. Most analyses of this question have been conducted in wealthier countries based on data from elderly populations - which have the highest prevalence of vitamin B12 deficiency. However, of potentially greater concern is the increasingly common practice of folic acid fortification in developing countries, where folate status is probably often adequate even prior to fortification, and vitamin B12 depletion or deficiency is common. To add to this information, data from a group of Chilean elderly with a range of vitamin B12 status and exposed to high levels of folic acid fortification will be presented. Copyright (C) 2012 S. Karger AG, Basel
C1 Univ Calif Davis, USDA, Western Human Nutr Res Ctr, ARS, Davis, CA 95616 USA.
RP Allen, LH (reprint author), Univ Calif Davis, USDA, Western Human Nutr Res Ctr, ARS, 430 W Hlth Sci Dr, Davis, CA 95616 USA.
EM lhallen@ucdavis.edu
NR 49
TC 1
Z9 1
U1 0
U2 12
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1664-2147
BN 978-3-318-02111-0
J9 NESTLE NUTR WORKS SE
PY 2012
VL 70
BP 175
EP 183
PG 9
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA BDF63
UT WOS:000313025200023
PM 25825307
ER
PT S
AU Rosenberg, IH
AF Rosenberg, Irwin H.
BE Bhutta, ZA
Hurrell, RF
Rosenberg, IH
TI Discussion on Vitamin B-12 and Folic Acid Fortification
SO MEETING MICRONUTRIENT REQUIREMENTS FOR HEALTH AND DEVELOPMENT
SE Nestle Nutrition Institute Workshop Series
LA English
DT Proceedings Paper
CT 70th Nestle-Nutrition-Institute Workshop
CY MAR 27-30, 2011
CL Cebu, PHILIPPINES
SP Nestle Nutr Inst
C1 Tufts Univ, Nutr & Neurocognit Lab, Jean Mayer USDA HNRCA, Boston, MA 02111 USA.
RP Rosenberg, IH (reprint author), Tufts Univ, Nutr & Neurocognit Lab, Jean Mayer USDA HNRCA, 711 Washington St, Boston, MA 02111 USA.
EM irwin.rosenberg@tufts.edu
NR 0
TC 0
Z9 0
U1 0
U2 0
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1664-2147
BN 978-3-318-02111-0
J9 NESTLE NUTR WORKS SE
PY 2012
VL 70
BP 184
EP 186
PG 3
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA BDF63
UT WOS:000313025200024
PM 25825308
ER
PT S
AU Rosenberg, IH
AF Rosenberg, Irwin H.
BE Bhutta, ZA
Hurrell, RF
Rosenberg, IH
TI Summary on Iodine Folate and Vitamin B-12
SO MEETING MICRONUTRIENT REQUIREMENTS FOR HEALTH AND DEVELOPMENT
SE Nestle Nutrition Institute Workshop Series
LA English
DT Proceedings Paper
CT 70th Nestle-Nutrition-Institute Workshop
CY MAR 27-30, 2011
CL Cebu, PHILIPPINES
SP Nestle Nutr Inst
C1 Tufts Univ, Nutr & Neurocognit Lab, Jean Mayer USDA HNRCA, Boston, MA 02111 USA.
RP Rosenberg, IH (reprint author), Tufts Univ, Nutr & Neurocognit Lab, Jean Mayer USDA HNRCA, 711 Washington St, Boston, MA 02111 USA.
EM irwin.rosenberg@tufts.edu
NR 1
TC 0
Z9 0
U1 0
U2 0
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1664-2147
BN 978-3-318-02111-0
J9 NESTLE NUTR WORKS SE
PY 2012
VL 70
BP 187
EP 189
PG 3
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA BDF63
UT WOS:000313025200025
PM 25825309
ER
PT J
AU Jalali, GA
Akbarian, H
Rhoades, C
Yousefzadeh, H
AF Jalali, Gholam Ali
Akbarian, Hossein
Rhoades, Charles
Yousefzadeh, Hamed
TI THE EFFECT OF THE HALOPHYTIC SHRUB LYCIUM RUTHENICUM (MUTT) ON SELECTED
SOIL PROPERTIES OF A DESERT ECOSYSTEM IN CENTRAL IRAN
SO POLISH JOURNAL OF ECOLOGY
LA English
DT Article
DE salinity; soil chemistry; arid land rehabilitation; soil stabilization;
desertification
ID SEMI-ARID SAVANNA; NUTRIENTS; NITROGEN; PLANTS; TREES
AB We compared soil properties beneath naturally-occurring patches of Lycium ruthenicum Murray (fam. Solanaceae) to evaluate the shrub's potential to improve the fertility of saline soils. Soil pH, total nitrogen and carbon and extractable potassium, magnesium and phosphorus were respectively significantly higher in the A and B horizons of Lycium shrub patches compared to adjacent unvegetated soils. The influence of Lycium on these soil properties increased with shrub density. Total soil N and extractable Mg and K concentrations were 1.8, 2.6- and 6.6-fold higher under dense Lycium shrub patches compared to unvegetated, bare areas and soil pH was 0.5 units higher. In contrast, the presence of shrubs and shrub density had no clear affect on the EC, Na or CEC of the A horizon soils. The shrub effect extended to the gypsum-rich By horizon (20-50 cm depth) and underlying B horizon (30-80 cm depth) for several soil properties. Total soil C and N were 1.8- and 1.6-fold higher beneath dense Lycium patches than bare soil areas. Soil pH remained 0.4 units higher under dense Lycium than bare soil patches. In the B horizon total soil C was twice as high beneath dense Lycium patches compared to the other patch types. Lycium ruthenicum not only tolerates the saline and drought conditions, it also produces sufficient biomass to increase the nutrient and organic matter content of surface mineral soils in this arid ecosystem and may have potential to improve soil conditions, facilitate ecosystem development and slow desertification.
C1 [Jalali, Gholam Ali; Akbarian, Hossein; Yousefzadeh, Hamed] Tarbiat Modares Univ, Dept Forestry, Fac Nat Resources & Marine Sci, Noor, Mazandaran, Iran.
[Rhoades, Charles] US Forest Serv, Rocky Mt Res Stn, Ft Collins, CO USA.
RP Yousefzadeh, H (reprint author), Tarbiat Modares Univ, Dept Forestry, Fac Nat Resources & Marine Sci, Noor, Mazandaran, Iran.
EM hamed_seraj20@yahoo.com
NR 28
TC 0
Z9 1
U1 1
U2 8
PU POLISH ACAD SCIENCES INST ECOLOGY
PI LOMIANKI
PA DZIEKANOW LESNY NEAR WARSAW, 05-092 LOMIANKI, POLAND
SN 1505-2249
J9 POL J ECOL
JI Pol. J. Ecol.
PY 2012
VL 60
IS 4
BP 845
EP 850
PG 6
WC Ecology
SC Environmental Sciences & Ecology
GA 056VK
UT WOS:000312519300017
ER
PT J
AU Brock, F
Ostapkowicz, J
Ramsey, CB
Wiedenhoeft, A
Cartwright, C
AF Brock, Fiona
Ostapkowicz, Joanna
Ramsey, Christopher Bronk
Wiedenhoeft, Alex
Cartwright, Caroline
TI PAIRED DATING OF PITH AND OUTER EDGE (TERMINUS) SAMPLES FROM
PRE-HISPANIC CARIBBEAN WOODEN SCULPTURES
SO RADIOCARBON
LA English
DT Article
ID RADIOCARBON-DATES; TREE GROWTH; AGE
AB Radiocarbon dating of historical and archaeological wood can be complicated, sometimes involving issues of "inbuilt" age in slow-growing woods, and/or the possibility of reuse or long delays between felling and use of the wood. Terminus dates can be provided by dating the sapwood, or the outermost edge of heartwood, while a date from the pith can give an indication of the first years of growth. A sequence of samples from specific points within the bole can be used to determine the growth rate of the tree. Such a combined dating strategy is particularly useful in cross-referencing dates from a single piece, better placing it in its chronological context. This paper reports paired or multiple dates from 11 wooden sculptures dated as part of the Pre-Hispanic Caribbean Sculptural Arts in Wood project, which studied 66 wooden artifacts attributed to the pre-colonial Taino, the indigenous peoples of the Caribbean's Greater Antilles. The calibrated ages of the pieces published here range from similar to AD 700-1500, indicating that the Taino were producing elaborate sculptures much earlier than previously thought. The paired or multiple dates from these carvings confirmed the accuracy of the results, and were also used to construct a growth rate model of what was expected to be a slow-growing species (Guaiacum sp.). This model demonstrates that the boles used to create the sculptures grew on average 1 cm every 6-13 yr.
C1 [Brock, Fiona; Ramsey, Christopher Bronk] Univ Oxford, Oxford Radiocarbon Accelerator Unit, Res Lab Archaeol & Hist Art, Oxford OX1 3QY, England.
[Ostapkowicz, Joanna] World Museum Liverpool, Liverpool L3 8EN, Merseyside, England.
[Wiedenhoeft, Alex] US Forest Serv, Ctr Wood Anat Res, Forest Prod Lab, USDA, Madison, WI 53726 USA.
[Cartwright, Caroline] British Museum, Sci Res Lab, London WC1B 3DG, England.
RP Brock, F (reprint author), Univ Oxford, Oxford Radiocarbon Accelerator Unit, Res Lab Archaeol & Hist Art, Dyson Perrins Bldg,S Parks Rd, Oxford OX1 3QY, England.
EM Fiona.brock@rlaha.ox.ac.uk
RI Bronk Ramsey, Christopher/A-3277-2012; Brock, Fiona/I-4970-2016
OI Brock, Fiona/0000-0003-0728-6091
FU British Academy; Getty Foundation
FX This work was part of the Pre-Hispanic Caribbean Sculptural Arts in Wood
project funded by the British Academy and the Getty Foundation. The
authors wish to thank the following museums for permissions to sample:
American Museum of Natural History and The Metropolitan Museum of Art
(New York, USA); The National Museum of the American Indian (Washington,
DC, USA); The Peabody Museum of Natural History (New Haven, USA); Bryn
Mawr College (Bryn Mawr, USA); The National Gallery (Kingston, Jamaica);
The British Museum (London, UK); and Musee Barrois (Bar-le-Duc, France).
All photographs were taken by J Ostapkowicz, unless otherwise stated. B
Lorentzen and S Manning are thanked for helpful discussions about
dendrochronology of tropical woods. S Harris, T Higham, and R Schulting
are also thanked for their contributions.
NR 34
TC 2
Z9 2
U1 0
U2 7
PU UNIV ARIZONA DEPT GEOSCIENCES
PI TUCSON
PA RADIOCARBON 4717 E FORT LOWELL RD, TUCSON, AZ 85712 USA
SN 0033-8222
J9 RADIOCARBON
JI Radiocarbon
PY 2012
VL 54
IS 3-4
BP 677
EP 688
PG 12
WC Geochemistry & Geophysics
SC Geochemistry & Geophysics
GA 051VR
UT WOS:000312156500030
ER
PT J
AU Kovach, DA
Widrlechner, MP
Brenner, DM
AF Kovach, D. A.
Widrlechner, M. P.
Brenner, D. M.
TI Variation in seed dormancy in Echinochloa and the development of a
standard protocol for germination testing. II: Breaking dormancy in
seeds unresponsive to light or dark conditions alone by using heat and
ethanol pretreatment
SO SEED SCIENCE AND TECHNOLOGY
LA English
DT Article
ID SECONDARY DORMANCY; CUCUMBER
AB A recently established method for the germination of Echinochloa seeds recognised and accounted for variation in responses to light and darkness. This method used parallel light and dark tests and was successful in promoting germination in most seed lots. However, some samples exhibited deeper dormancy and were not fully responsive to either test. In the present study, we employed warm pretreatments where seeds were exposed to dilute aqueous ethanol solutions to attempt to break their dormancy. Based on tests of five Echinochloa accessions, we propose a new, follow-up protocol that can be used on samples unresponsive to the established method. The additional step involves a 3-day dark pretreatment at 35-37 degrees C, imbibing the seeds in similar to 0.25M ethanol (aq). After this pretreatment, the seeds should be germinated for 14 days at 20/30 degrees C (16 hours/ 8 hours) with half held in darkness and the other half exposed to an 8-hour light cycle.
C1 [Widrlechner, M. P.] Iowa State Univ, Dept Hort, Ames, IA 50011 USA.
[Kovach, D. A.; Widrlechner, M. P.] USDA ARS, N Cent Reg Plant Intro Stn, Ames, IA 50011 USA.
[Brenner, D. M.] Iowa State Univ, Dept Agron, Ames, IA 50011 USA.
[Widrlechner, M. P.] Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA 50011 USA.
RP Widrlechner, MP (reprint author), Iowa State Univ, Dept Hort, Ames, IA 50011 USA.
EM isumw@iastate.edu
FU Iowa Agriculture and Home Economics Experiment Station, Ames, Iowa
[1018]; state of Iowa
FX Journal paper of the Iowa Agriculture and Home Economics Experiment
Station, Ames, Iowa, Project No. 1018, was supported by Hatch Act and
the state of Iowa. Mention of commercial brand names does not constitute
an endorsement of any product by the U.S. Department of Agriculture or
cooperating agencies. We would like to thank David Ellis, Candice A.
Gardner and Miller B. McDonald for their useful critiques of our
manuscript.
NR 14
TC 0
Z9 0
U1 3
U2 12
PU ISTA-INT SEED TESTING ASSOC
PI BASSERSDORF
PA ZUERICHSTR 50, PO BOX 308, CH-8303 BASSERSDORF, SWITZERLAND
SN 0251-0952
J9 SEED SCI TECHNOL
JI Seed Sci. Technol.
PY 2012
VL 40
IS 3
BP 299
EP 308
PG 10
WC Agronomy; Plant Sciences; Horticulture
SC Agriculture; Plant Sciences
GA 058BU
UT WOS:000312609900002
ER
PT S
AU Roelvink, J
Trabelsi, S
AF Roelvink, Jochem
Trabelsi, Samir
GP IEEE
TI Measuring the Complex Permittivity of Thin Grain Samples by the
Free-Space Transmission Technique
SO 2012 IEEE INTERNATIONAL INSTRUMENTATION AND MEASUREMENT TECHNOLOGY
CONFERENCE (I2MTC)
SE IEEE Instrumentation and Measurement Technology Conference
LA English
DT Proceedings Paper
CT IEEE International Instrumentation and Measurement Technology Conference
(I2MTC)
CY MAY 13-16, 2012
CL Graz, AUSTRIA
SP IEEE, IEEE Instrumentat & Measurement Soc, IEEE Austria Sect, TU Graz, Virtual Vehicle Competence Ctr, Obuda Univ, European Acad Sci & Arts, Austrian Acad Sci, Int Soc Petr Engineers, Drilling Syst Automat Tech Sect, Arbeitskreis Hochschullehrer Messtechnik e.V. (AHMT), Joanneum Res, Austrian Ctr Competence Mechatron (ACCM), Platform Artemis Austria
DE Dielectric properties; permittivity measurements; microwave sensing;
transmission measurements; phase-shift ambiguity
ID DIELECTRIC-PROPERTIES; MICROWAVE; MOISTURE
AB In this paper, a numerical method for solving a higher-order model that relates the measured transmission coefficient to the permittivity of a material is used to determine the permittivity of thin grain samples. A method for resolving the phase ambiguity of the transmission coefficient is presented. Results calculated by using the higher-order model for the permittivity of grain over a range of moisture contents and frequencies are presented and compared to those calculated by using an approximate model. The advantage of using relatively thin grain samples is that a wider range of grain moisture contents can be reliably measured for a fixed sample thickness.
C1 [Roelvink, Jochem; Trabelsi, Samir] ARS, USDA, Richard B Russell Agr Res Ctr, Athens, GA 30605 USA.
RP Roelvink, J (reprint author), ARS, USDA, Richard B Russell Agr Res Ctr, Athens, GA 30605 USA.
EM Jochem.Roelvink@ars.usda.gov; Samir.Trabelsi@ars.usda.gov
NR 7
TC 2
Z9 2
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 1091-5281
BN 978-1-4577-1771-0
J9 IEEE IMTC P
PY 2012
BP 310
EP 313
PG 4
WC Engineering, Electrical & Electronic; Instruments & Instrumentation
SC Engineering; Instruments & Instrumentation
GA BCA46
UT WOS:000309449100061
ER
PT S
AU Trabelsi, S
AF Trabelsi, Samir
GP IEEE
TI Frequency and Temperature Dependence of Dielectric Properties of Chicken
Meat
SO 2012 IEEE INTERNATIONAL INSTRUMENTATION AND MEASUREMENT TECHNOLOGY
CONFERENCE (I2MTC)
SE IEEE Instrumentation and Measurement Technology Conference
LA English
DT Proceedings Paper
CT IEEE International Instrumentation and Measurement Technology Conference
(I2MTC)
CY MAY 13-16, 2012
CL Graz, AUSTRIA
SP IEEE, IEEE Instrumentat & Measurement Soc, IEEE Austria Sect, TU Graz, Virtual Vehicle Competence Ctr, Obuda Univ, European Acad Sci & Arts, Austrian Acad Sci, Int Soc Petr Engineers, Drilling Syst Automat Tech Sect, Arbeitskreis Hochschullehrer Messtechnik e.V. (AHMT), Joanneum Res, Austrian Ctr Competence Mechatron (ACCM), Platform Artemis Austria
DE dielectric properties; chicken meat; frequency dependence; temperature
dependence; Cole-Cole plot
ID WATER
AB Dielectric properties of chicken breast meat were measured with an open-ended coaxial-line probe between 200 MHz and 20 GHz at temperatures ranging from -20 degrees C to +25 degrees C. At a given temperature, the frequency dependence of the dielectric constant reveals two relaxations while those of the dielectric loss factor are dominated by ionic conduction in the lower range and a broad dipolar relaxation at higher frequencies. At a given frequency, the temperature dependence reveals a sharp increase of dielectric properties at about 0 degrees C which is typical of materials with high water content and indicates the transition from ice-like behavior to liquid. Both frequency and temperature behavior will be used in investigating correlations of dielectric properties with quality attributes of chicken meat.
C1 ARS, Qual & Safety Assessment Res Unit, USDA, Richard B Russell Agr Res Ctr, Athens, GA USA.
RP Trabelsi, S (reprint author), ARS, Qual & Safety Assessment Res Unit, USDA, Richard B Russell Agr Res Ctr, Athens, GA USA.
EM samir.trabelsi@ars.usda.gov
NR 6
TC 1
Z9 1
U1 0
U2 2
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 1091-5281
BN 978-1-4577-1771-0
J9 IEEE IMTC P
PY 2012
BP 1515
EP 1518
PG 4
WC Engineering, Electrical & Electronic; Instruments & Instrumentation
SC Engineering; Instruments & Instrumentation
GA BCA46
UT WOS:000309449100284
ER
PT J
AU Zasada, IA
Riga, E
Pinkerton, JN
Wilson, JH
Schreiner, RP
AF Zasada, Inga A.
Riga, Ekaterina
Pinkerton, John N.
Wilson, John H.
Schreiner, R. Paul
TI Plant-Parasitic Nematodes Associated with Grapevines, Vitis vinifera, in
Washington and Idaho
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Article
DE Vitis; Meloidogyne; arbuscular mycorrhizal fungi; semiarid; Xiphinema
ID MYCORRHIZAL FUNGI; SOIL TYPE; MICHIGAN; OREGON; PATHOGENICITY;
VINEYARDS; VIRUS; CROPS
AB Surveys were conducted in eastern Washington and Idaho to determine the plant-parasitic nematodes associated with winegrape (Vitis vinifera) vineyards. The most commonly encountered plant-parasitic nematodes in eastern Washington and Idaho winegrape vineyards were Meloidogyne hapla, Paratylenchus spp., and Xiphinema spp. (detected in >50% of sampled vineyards) with Pratylenchus spp. and Helicotylenchus spp. also commonly detected in Idaho. The frequency of occurrence of these plant-parasitic nematodes was consistently greater in Idaho compared to eastern Washington, except for M. hapla, which had a similar frequency of occurrence in both states. The types of groundcover or irrigation method used in vineyards and estimates of previous crop yields did not influence nematodes present in soil, but differences in plant-parasitic nematode communities were found among geographical areas (American Viticultural Areas, AVAs). Xiphinema spp. was more commonly associated with vineyards in the Horse Heaven Hills and Snake River Valley AVAs than in the Yakima Valley and Columbia Valley AVAs. Twenty-seven juice grape (Vitis labruscana) vineyards were sampled to enable a comparison of plant-parasitic nematode communities among red and white winegrapes (V vinifera) and juice grape varieties. Meloidogyne hapla and Xiphinema spp. were more commonly found in red and white winegrape vineyards than in juice grape vineyards, while Mesocriconema xenoplax and Paratylenchus spp. were more commonly associated with white wine and juice grape vineyards than with red winegrape vineyards. While plant-parasitic nematodes were commonly found in eastern Washington and Idaho vineyards, the impact of these plant-parasitic nematodes on winegrape productivity in this region remains to be determined.
C1 [Zasada, Inga A.; Pinkerton, John N.; Schreiner, R. Paul] ARS, USDA, Hort Crops Res Lab, Corvallis, OR 97330 USA.
[Riga, Ekaterina; Wilson, John H.] Washington State Univ, Irrigated Agr Res & Extens Ctr, Prosser, WA 99350 USA.
[Riga, Ekaterina] NW Agri Prod, Nematol, Pasco, WA 99301 USA.
RP Schreiner, RP (reprint author), ARS, USDA, Hort Crops Res Lab, 3420 NW Orchard Ave, Corvallis, OR 97330 USA.
EM paul.schreiner@ars.usda.gov
NR 30
TC 2
Z9 2
U1 3
U2 17
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 4
BP 522
EP 528
DI 10.5344/ajev.2012.12062
PG 7
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 055PO
UT WOS:000312429100008
ER
PT J
AU Castellano, MA
Beever, RE
Trappe, JM
AF Castellano, Michael A.
Beever, Ross E.
Trappe, James M.
TI Sequestrate fungi of New Zealand: Elaphomyces (Ascomycota, Eurotiales,
Elaphomycetaceae)
SO NEW ZEALAND JOURNAL OF BOTANY
LA English
DT Article
DE biodiversity; systematics; Eurotiales; Elaphomycetaceae; Elaphomyces
bollardii; Elaphomyces luteicrustus; Elaphomyces putridus; New Zealand
AB Four species of the sequestrate fungal genus Elaphomyces are reported from New Zealand: Elaphomyces bollardii sp. nov. associated with Leptospermum spp. and Kunzea ericoides, E. luteicrustus sp. nov. associated with Nothofagus menziesii, E. putridus sp. nov. associated with Nothofagus spp., and an unnamed species associated with Nothofagus spp.
C1 [Castellano, Michael A.] US Forest Serv, USDA, Corvallis, OR USA.
[Beever, Ross E.] Manaaki Whenua Landcare Res, Auckland, New Zealand.
[Trappe, James M.] Oregon State Univ, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA.
RP Castellano, MA (reprint author), US Forest Serv, USDA, Corvallis, OR USA.
EM mcastellano@fs.fed.us
FU Foundation for Research, Science and Technology [CO9309]; Lottery
Science; New Zealand-United States Co-operative Science Programme;
National Science Foundation [BSR 9201421]
FX Unfortunately Dr Ross Beever died while still in the process of
preparing this manuscript. RE Beever acknowledges support from
Foundation for Research, Science and Technology contract CO9309, Lottery
Science, and the New Zealand-United States Co-operative Science
Programme. JM Trappe and MA Castellano received support from National
Science Foundation Grant BSR 9201421.
NR 14
TC 2
Z9 2
U1 0
U2 4
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0028-825X
J9 NEW ZEAL J BOT
JI N. Z. J. Bot.
PY 2012
VL 50
IS 4
BP 423
EP 433
DI 10.1080/0028825X.2012.725057
PG 11
WC Plant Sciences
SC Plant Sciences
GA 057QT
UT WOS:000312578900007
ER
PT J
AU Nene, V
Svitek, N
Toye, P
Golde, WT
Barlow, J
Harndahl, M
Buus, S
Nielsen, M
AF Nene, Vishvanath
Svitek, Nicholas
Toye, Philip
Golde, William T.
Barlow, John
Harndahl, Mikkel
Buus, Soren
Nielsen, Morten
TI Designing bovine T cell vaccines via reverse immunology
SO TICKS AND TICK-BORNE DISEASES
LA English
DT Article; Proceedings Paper
CT 7th Conference on Ticks and Tick-Borne Pathogens
CY AUG 28-SEP 02, 2011
CL Zaragoza, SPAIN
DE Theileria parva; Cytotoxic T lymphocytes; Epitope prediction;
Peptide-MHC tetramers; Vaccine development
ID MHC CLASS-I; MAJOR HISTOCOMPATIBILITY COMPLEX; PARASITE STRAIN
SPECIFICITY; THEILERIA-PARVA; PEPTIDE-BINDING; CATTLE; PREDICTION;
MOLECULES; RESPONSES; ANTIGENS
AB T cell responses contribute to immunity against many intracellular infections. There is, for example, strong evidence that major histocompatibility complex (MHC) class l-restricted cytotoxic T lymphocytes (CTLs) play an essential role in mediating immunity to East Coast fever (ECF), a fatal lymphoproliferative disease of cattle prevalent in sub-Saharan Africa and caused by Theileria parva. To complement the more traditional approaches to CTL antigen identification and vaccine development that we have previously undertaken we propose a use of immunoinformatics to predict CTL peptide epitopes followed by experimental verification of T cell specificity to candidate epitopes using peptide-MHC (pMHC) tetramers. This system, adapted from human and rodent studies, is in the process of being developed for cattle. Briefly, we have used an artificial neural network called NetMHCpan, which has been trained mainly on existing human, mouse, and non-human primate MHC-peptide binding data in an attempt to predict the peptide-binding specificity of bovine MHC class I molecules. Our data indicate that this algorithm needs to be further optimized by incorporation of bovine MHC-peptide binding data. When retrained, NetMHCpan may be used to predict parasite peptide epitopes by scanning the predicted T. parva proteome and known parasite CTL antigens. A range of pMHC tetramers, made "on-demand", will then be used to assay cattle that are immune to ECF or in vaccine trials to determine if CTLs of the predicted epitope specificity are present or not. Thus, pMHC tetramers can be used in one step to identify candidate CTL antigens and to map CTL epitopes. Our current research focuses on 9 different BoLA class I molecules. By expanding this repertoire to include the most common bovine MHCs, these methods could be used as generic assays to predict and measure bovine T cell immune responses to any pathogen. (C) 2012 Elsevier GmbH. All rights reserved.
C1 [Nene, Vishvanath; Svitek, Nicholas; Toye, Philip] Int Livestock Res Inst, Nairobi 00100, Kenya.
[Golde, William T.] ARS, Foreign Anim Dis Unit, Plum Isl Anim Dis Ctr, USDA, Greenport, NY 11944 USA.
[Barlow, John] Univ Vermont, Dept Anim Sci, Coll Agr & Life Sci, Burlington, VT 05405 USA.
[Harndahl, Mikkel; Buus, Soren] Univ Copenhagen, Fac Hlth Sci, Expt Immunol Lab, DK-2200 Copenhagen N, Denmark.
[Nielsen, Morten] Tech Univ Denmark, Dept Syst Biol, Ctr Biol Sequence Anal, DK-2800 Lyngby, Denmark.
RP Nene, V (reprint author), Int Livestock Res Inst, Old Naivasha Rd,POB 30709, Nairobi 00100, Kenya.
EM v.nene@cgiar.org
RI Nielsen, Morten/E-7754-2011; Barlow, John/C-4876-2013;
OI Nielsen, Morten/0000-0001-7885-4311; Barlow, John/0000-0002-7815-9383;
Buus, Soren/0000-0001-8363-1999
NR 38
TC 10
Z9 10
U1 0
U2 14
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1877-959X
J9 TICKS TICK-BORNE DIS
JI Ticks Tick-Borne Dis.
PY 2012
VL 3
IS 3
SI SI
BP 188
EP 192
DI 10.1016/j.ttbdis.2011.12.001
PG 5
WC Infectious Diseases; Microbiology; Parasitology
SC Infectious Diseases; Microbiology; Parasitology
GA 031PT
UT WOS:000310655100010
PM 22621863
ER
PT J
AU Woodley, NE
AF Woodley, Norman E.
TI Revision of the southeast Asian soldier-fly genus Parastratiosphecomyia
Brunetti, 1923 (Diptera, Stratiomyidae, Pachygastrinae)
SO ZOOKEYS
LA English
DT Article
DE Oriental Region; Pachygastrinae; taxonomy; new species; wasp mimicry
AB The genus Parastratiosphecomyia Brunetti is revised with the description of two new species: P. freidbergi sp. n. from India and P. rozkosnyi sp. n. from Laos and Thailand. All four species in the genus are illustrated and a key to species is provided. Type localities of previously described taxa are briefly discussed.
C1 USDA, Systemat Entomol Lab, PSI, ARS,Smithsonian Inst NHB, Washington, DC 20013 USA.
RP Woodley, NE (reprint author), USDA, Systemat Entomol Lab, PSI, ARS,Smithsonian Inst NHB, 168 POB 37012, Washington, DC 20013 USA.
EM norman.woodley@ars.usda.gov
RI Woodley, Norman/M-6160-2014
NR 8
TC 2
Z9 2
U1 0
U2 3
PU PENSOFT PUBL
PI SOFIA
PA 12 PROF GEORGI ZLATARSKI ST, SOFIA, 1700, BULGARIA
SN 1313-2989
EI 1313-2970
J9 ZOOKEYS
JI ZooKeys
PY 2012
IS 238
BP 1
EP 21
DI 10.3897/zookeys.238.3999
PG 21
WC Zoology
SC Zoology
GA 046IS
UT WOS:000311759300001
PM 23226704
ER
PT J
AU Guo, ZL
Zhang, KL
Zobeck, TM
AF Guo, Zhongling
Zhang, Keli
Zobeck, T. M.
GP IEEE
TI Validation the Wind Generator of Revised Wind Erosion Equation (RWEQ)
using measured wind data of China
SO 2012 WORLD AUTOMATION CONGRESS (WAC)
LA English
DT Proceedings Paper
CT World Automation Congress (WAC)
CY JUN 24-28, 2012
CL Puerto Vallarta, MEXICO
SP TSI Enterprises Inc
DE RWEQ; wind generator; wind factor
ID MODEL
AB The Revised Wind Erosion Equation (RWEQ) is a process-based, field-scale, empirical model with the ability to estimate annual or period wind erosion. A wind generator was used to reproduce wind data based on observed wind records in RWEQ. The need for validating the wind generator using measured wind data of China is growing. In this study, wind factor (Wf) was chosen to investigate the performance of the wind generator. We compared Wf calculated from stochastically generated wind data (Wf(g)) with Wf computed from the measured wind data (Wf(m)) for 36 weather stations in north China to test the wind generator. The wind generator under-estimated the wind factor generally while simple linear regression between Wf(g) and Wf(m) demonstrated significant correlation (R=0.84, P<0.001). The result revealed that the wind generator could not be directly used to evaluate the wind factor for the given weather stations in China.
C1 [Guo, Zhongling; Zhang, Keli] Beijing Normal Univ, Sch Geog, Beijing 100875, Peoples R China.
[Zobeck, T. M.] USDA ARS, Cropping Syst Res Lab, Lubbock, TX USA.
RP Guo, ZL (reprint author), Beijing Normal Univ, Sch Geog, Beijing 100875, Peoples R China.
EM gzldhr@gmail.com; ted.zobeck@ars.usda.gov
FU Outstanding Doctoral Dissertation Foundation of Beijing Normal
University; Chinese State Forestry Administration [200804020]
FX The research was sponsored by the Outstanding Doctoral Dissertation
Foundation of Beijing Normal University, Beijing, P. R. China. Work
reported in this paper is also part of Forestry Scientific Research
Project (200804020) supported by Chinese State Forestry Administration.
NR 5
TC 0
Z9 0
U1 0
U2 5
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
BN 978-1-4673-4497-5
PY 2012
PG 3
WC Automation & Control Systems; Engineering, Electrical & Electronic
SC Automation & Control Systems; Engineering
GA BCJ87
UT WOS:000310335802075
ER
PT J
AU Yu, JZ
Kohel, RJ
Fang, DD
Cho, JM
Van Deynze, A
Ulloa, M
Hoffman, SM
Pepper, AE
Stelly, DM
Jenkins, JN
Saha, S
Kumpatla, SP
Shah, MR
Hugie, WV
Percy, RG
AF Yu, John Z.
Kohel, Russell J.
Fang, David D.
Cho, Jaemin
Van Deynze, Allen
Ulloa, Mauricio
Hoffman, Steven M.
Pepper, Alan E.
Stelly, David M.
Jenkins, Johnie N.
Saha, Sukumar
Kumpatla, Siva P.
Shah, Manali R.
Hugie, William V.
Percy, Richard G.
TI A High-Density Simple Sequence Repeat and Single Nucleotide Polymorphism
Genetic Map of the Tetraploid Cotton Genome
SO G3-GENES GENOMES GENETICS
LA English
DT Article
DE cotton (Gossypium spp.) genomes; genetic linkage map; simple sequence
repeat (SSR); single nucleotide polymorphism (SNP); recombinant inbred
line (RIL) population
ID GOSSYPIUM-HIRSUTUM L.; CHROMOSOME SUBSTITUTION LINES; FIBER QUALITY
TRAITS; UPLAND COTTON; BACKCROSS POPULATION; POLYPLOID FORMATION;
LINKAGE GROUPS; PHYSICAL MAP; BARBADENSE; EVOLUTION
AB Genetic linkage maps play fundamental roles in understanding genome structure, explaining genome formation events during evolution, and discovering the genetic bases of important traits. A high-density cotton (Gossypium spp.) genetic map was developed using representative sets of simple sequence repeat (SSR) and the first public set of single nucleotide polymorphism (SNP) markers to genotype 186 recombinant inbred lines (RILs) derived from an interspecific cross between Gossypium hirsutum L. (TM-1) and G. barbadense L. (3-79). The genetic map comprised 2072 loci (1825 SSRs and 247 SNPs) and covered 3380 centiMorgan (cM) of the cotton genome (AD) with an average marker interval of 1.63 cM. The allotetraploid cotton genome produced equivalent recombination frequencies in its two subgenomes (At and Dt). Of the 2072 loci, 1138 (54.9%) were mapped to 13 At-subgenome chromosomes, covering 1726.8 cM (51.1%), and 934 (45.1%) mapped to 13 Dt-subgenome chromosomes, covering 1653.1 cM (48.9%). The genetically smallest homeologous chromosome pair was Chr. 04 (A04) and 22 (D04), and the largest was Chr. 05 (A05) and 19 (D05). Duplicate loci between and within homeologous chromosomes were identified that facilitate investigations of chromosome translocations. The map augments evidence of reciprocal rearrangement between ancestral forms of Chr. 02 and 03 versus segmental homeologs 14 and 17 as centromeric regions show homeologous between Chr. 02 (A02) and 17 (D02), as well as between Chr. 03 (A03) and 14 (D03). This research represents an important foundation for studies on polyploid cottons, including germplasm characterization, gene discovery, and genome sequence assembly.
C1 [Yu, John Z.; Kohel, Russell J.; Cho, Jaemin; Hoffman, Steven M.; Percy, Richard G.] USDA ARS, So Plains Agr Res Ctr, College Stn, TX 77845 USA.
[Fang, David D.] USDA ARS, Cotton Fiber Biosci Res Unit, So Reg Res Ctr, New Orleans, LA 70124 USA.
[Van Deynze, Allen] Univ Calif Davis, Seed Biotechnol Ctr, Davis, CA 95616 USA.
[Ulloa, Mauricio] USDA ARS, WICSRU, Shafter Cotton Res Stn, Shafter, CA 93263 USA.
[Hoffman, Steven M.; Pepper, Alan E.] Texas A&M Univ, Dept Biol, College Stn, TX 77843 USA.
[Stelly, David M.] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA.
[Jenkins, Johnie N.; Saha, Sukumar] USDA ARS, Genet & Precis Agr Res Unit, Mississippi State, MS 39762 USA.
[Kumpatla, Siva P.; Shah, Manali R.] Dow AgroSci LLC, Indianapolis, IN 46268 USA.
[Hugie, William V.] Monsanto Co, St Louis, MO 63167 USA.
RP Yu, JZ (reprint author), USDA ARS, So Plains Agr Res Ctr, 2881 F&B Rd, College Stn, TX 77845 USA.
EM john.yu@ars.usda.gov
OI Stelly, David/0000-0002-3468-4119; fang, david/0000-0003-0036-5459
NR 65
TC 58
Z9 63
U1 1
U2 17
PU GENETICS SOC AM
PI BETHESDA
PA 9650 ROCKVILLE AVE, BETHESDA, MD 20814 USA
SN 2160-1836
J9 G3-GENES GENOM GENET
JI G3-Genes Genomes Genet.
PD JAN 1
PY 2012
VL 2
IS 1
BP 43
EP 58
DI 10.1534/g3.111.001552
PG 16
WC Genetics & Heredity
SC Genetics & Heredity
GA 055JB
UT WOS:000312410700006
PM 22384381
ER
PT J
AU Bansal, R
Mian, MAR
Mittapalli, O
Michel, AP
AF Bansal, Raman
Mian, M. A. Rouf
Mittapalli, Omprakash
Michel, Andy P.
TI Characterization of a Chitin Synthase Encoding Gene and Effect of
Diflubenzuron in Soybean Aphid, Aphis Glycines
SO INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES
LA English
DT Article
DE Chitin synthase; Aphis glycines; Integument; Embryo; Diflubenzuron
ID INSECT OSTRINIA-FURNACALIS; RED FLOUR BEETLE; PHYSIOLOGICAL
SIGNIFICANCE; TRIBOLIUM-CASTANEUM; EXPRESSION PATTERN;
SPODOPTERA-EXIGUA; HEMIPTERA APHIDIDAE; DIGESTIVE ENZYMES;
MOLECULAR-CLONING; MANDUCA-SEXTA
AB Chitin synthases are critical enzymes for synthesis of chitin and thus for subsequent growth and development in insects. We identified the cDNA of chitin synthase gene (CHS) in Aphis glycines, the soybean aphid, which is a serious pest of soybean. The full-length cDNA of CHS in A. glycines (AyCHS) was 5802 bp long with an open reading frame of 4704 bp that encoded for a 1567 amino acid residues protein. The predicted AyCHS protein had a molecular mass of 180.05 kDa and its amino acid sequence contained all the signature motifs (EDR, QRRRW and TWGTR) of chitin synthases. The quantitative real-time PCR (qPCR) analysis revealed that AyCHS was expressed in all major tissues (gut, fat body and integument); however, it had the highest expression in integument (similar to 3.5 fold compared to gut). Interestingly, the expression of AyCHS in developing embryos was nearly 7 fold higher compared to adult integument, which probably is a reflection of embryonic molts in hemimetabolus insects. Expression analysis in different developmental stages of A. glycines revealed a consistent AyCHS expression in all stages. Further, through leaf dip bioassay, we tested the effect of diflubenzuron (DFB, Dimilin (R)), a chitin-synthesis inhibitor, on A. glycines' survival, fecundity and body weight. When fed with soybean leaves previously dipped in 50 ppm DFB solution, A. glycines nymphs suffered significantly higher mortality compared to control. A. glycines nymphs feeding on diflubenzuron treated leaves showed a slightly enhanced expression (1.67 fold) of AyCHS compared to nymphs on untreated leaves. We discussed the potential applications of the current study to develop novel management strategies using chitin-synthesis inhibitors and using RNAi by knocking down AyCHS expression.
C1 [Bansal, Raman; Mittapalli, Omprakash; Michel, Andy P.] Ohio State Univ, Ohio Agr Res & Dev Ctr, Dept Entomol, Wooster, OH 44691 USA.
[Mian, M. A. Rouf] Ohio State Univ, ARS, USDA, Wooster, OH 44691 USA.
[Mian, M. A. Rouf] Ohio State Univ, Dept Hort & Crop Sci, Wooster, OH 44691 USA.
RP Michel, AP (reprint author), Ohio State Univ, Ohio Agr Res & Dev Ctr, Dept Entomol, 1680 Madison Ave, Wooster, OH 44691 USA.
EM michel.70@osu.edu
FU North-Central Soybean Research Program; Ohio Soybean Council
[11-2-36004]
FX This research was supported through the North-Central Soybean Research
Program and the Ohio Soybean Council (# 11-2-36004).
NR 60
TC 11
Z9 11
U1 1
U2 24
PU IVYSPRING INT PUBL
PI LAKE HAVEN
PA PO BOX 4546, LAKE HAVEN, NSW 2263, AUSTRALIA
SN 1449-2288
J9 INT J BIOL SCI
JI Int. J. Biol. Sci.
PY 2012
VL 8
IS 10
BP 1323
EP 1334
DI 10.7150/ijbs.4189
PG 12
WC Biochemistry & Molecular Biology; Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics
GA 053RK
UT WOS:000312290500003
PM 23139631
ER
PT S
AU Cao, XM
Wang, JL
Chen, MS
Gao, ZQ
AF Cao, Xiao-ming
Wang, Juan-le
Chen, Mao-si
Gao, Zhi-qiang
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI The differences in the transpiration of non-irrigated Haloxylon
ammodendron in hinterland of Gurbantunggut desert based on diameter
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE the stem sap flow rate; Haloxylon ammodendron; differences; diameter;
transpiration
AB The stem sap flow exhibited a bi-peaked or multi-peaked curve, with lower values at night than during the day. The ambiguous noon-depression phenomenon usually occurs during 14:00 similar to 16: 00 from mid-May to the early September. Under the same environmental conditions, the larger the stem diameter, the larger the stem sap flow, and the more obvious the ambiguous noon-depression phenomenon. The daily changes of the sap flow were highest in June and lowest in September. There were differences in the monthly mean value in different plants, which may result from the differences in the crown and the number of assimilation organ. The daily accumulation showed a "S" trend between May and the end of August, and showed a straight line with the same slope in September and October. The larger the stem diameter, the larger the daily water use and the accumulative rate were. The sap flow was influenced by meterological factors, it was positively correlated with solar radiation, air temperature and wind speed, and negatively correlated with the air relative humidity, in which the solar radiation had the greatest impact on the sap flow. Under the same environmental condition, the larger the stem diameter, the better the correlation was. The correlation was the largest water use in July, and least in May and October. The larger the stem diameter, the more the water consumption was.
C1 [Cao, Xiao-ming; Wang, Juan-le; Gao, Zhi-qiang] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
[Chen, Mao-si; Gao, Zhi-qiang] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO USA.
[Gao, Zhi-qiang] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai, Peoples R China.
RP Wang, JL (reprint author), Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
EM wangjl@igsnrr.ac.cn
FU Public Welfare Special Program, Ministry of Environmental Protection of
the People's Republic of China [201109075]; Natural Science Foundation
of China [41171334, 41071278]; USDA NIFA [2010-34263-21075]
FX The authors are grateful for the support from Public Welfare Special
Program, Ministry of Environmental Protection of the People's Republic
of China (Grant No. 201109075), Natural Science Foundation of China
(41171334,41071278) and USDA NIFA project (2010-34263-21075). The basic
work items by the Ministry of Science the norms for the comprehensive
scientific investigation of the grid- based resources and environment of
the People's Republic of China (Grant No. 2011FY110400). National
Natural Science Foundation of China (41171334 and 41071278).
NR 12
TC 0
Z9 0
U1 0
U2 3
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 85130O
DI 10.1117/12.928277
PG 9
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600019
ER
PT S
AU Cao, XM
Wang, JL
Gao, ZQ
Chen, MS
AF Cao, Xiao-ming
Wang, Juan-le
Gao, Zhi-qiang
Chen, Mao-si
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI The transpiration and the spectral response of non-irrigated Haloxylon
ammodendron at canopy scale
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE the stem sap flow rate; the canopy scale; Haloxylon ammodendron; the
reflectance
AB Transpiration, an essential component of surface evapotranspiration, is particularly important in the research of surface evapotranspiration in arid areas. The paper inverted the transpiration of non-irrigated Haloxylon ammodendron and its spectral responses at the canopy scale in the southern edge of the Gurbantunggut desert in Xinjiang, China. The results are as follows:The stem sap flow rate appeared biomadal or multi-peak course and maintained a certain flow in the night. The stem sap flow maintained at 0 similar to 0.1 L/h, with a peak appearing at 12:00 similar to 17:30, 0.316 L/h. "Noon peak" appeared from mid May to early September, at 14:00 similar to 16:00. For monthly changes, the peak value appeared in June, with the value varying (0.32 +/- 0.20) L / h, followed by July (0.30+/-0.16) L/h, then, May and August, the minimum value appeared in September (0.15+/-0.03) L/h. At the canopy scale, the optimal exponential model of the sap flow rate based on the hyperspectrum is y = 0.0015e(3.8922x), R-2 = 0.806.
C1 [Cao, Xiao-ming; Wang, Juan-le; Gao, Zhi-qiang] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
[Gao, Zhi-qiang; Chen, Mao-si] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO USA.
[Gao, Zhi-qiang] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai, Peoples R China.
RP Wang, JL (reprint author), Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
EM wangjl@igsnrr.ac.cn
FU Natural Science Foundation of China [41171334, 41071278]; USDA NIFA
[2010-34263-21075]; Public Welfare Special Program, Ministry of
Environmental Protection of the People's Republic of China [201109075]
FX The authors are grateful for the support from Natural Science Foundation
of China ( 41171334,41071278) and USDA NIFA project ( 2010-34263-21075),
Public Welfare Special Program, Ministry of Environmental Protection of
the People's Republic of China ( Grant No. 201109075). The basic work
items by the Ministry of Science the norms for the comprehensive
scientific investigation of the grid- based resources and environment of
the People's Republic of China ( Grant No. 2011FY110400). National
Natural Science Foundation of China ( 41171334 and 41071278).
NR 10
TC 0
Z9 0
U1 0
U2 1
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 85130M
DI 10.1117/12.928275
PG 7
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600018
ER
PT S
AU Chen, MS
Davis, J
Tang, HZ
Gao, ZQ
Gao, W
AF Chen, Maosi
Davis, John
Tang, Hongzhao
Gao, Zhiqiang
Gao, Wei
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI A Multi-Channel Calibration Method for Multi-Filter Rotating Shadow-band
Radiometer
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE MFRSR; Angstrom Law; Langley Analysis; Multi-Channel Calibration;
CONDOR; Non-Linear Optimization
ID ULTRAVIOLET-B RADIATION; OPTICAL DEPTH; URBAN
AB In order to improve the accuracy of solar radiation related parameters' for crop modeling, a new calibration method (Multi-Channel Calibration) for Multi-Filter Rotating Shadow-band Radiometer (MFRSR) is proposed. It uses the Angstrom Law that links aerosol optical depth (AOD) at multiple wavelengths as the primary constraint. It also uses the bi-channel Langley Regression to provide an additional constraint. Starting with any initial guess of calibration coefficient (V-0) at 870 nm, two consecutive steps, both involves calling trust region based non-linear optimization module (CONDOR), are implemented to solve (1) the intermediate parameter Angstrom coefficient and the set of biased V-0s at other channels corresponding to the initial one at 870 nm channel; and (2) the final V-0s of all permissible channels. The result shows that Unlike Langley method, the Multi-Channel Calibration method return V-0 at all permissible channels. Besides, the new method can converge to the same (less than 0.5%) final V-0s with the starting guess in a wide range. Most important, the comparison between AODs derived from those final V-0s and those of AERONET sunphotometers suggests the upper limit of the error of those final V-0s is less than 1.03%, which is a great improvement over the Langley V-0s (7.45%).
C1 [Chen, Maosi; Davis, John; Tang, Hongzhao; Gao, Zhiqiang; Gao, Wei] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO 80521 USA.
RP Chen, MS (reprint author), Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO 80521 USA.
EM chenms@uvb.nrel.colostate.edu
RI Gao, Wei/O-1208-2013; Gao, Wei/C-1430-2016; Chen, Maosi/E-8230-2016
NR 14
TC 5
Z9 5
U1 0
U2 3
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 851305
DI 10.1117/12.929454
PG 14
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600003
ER
PT S
AU Gao, ZQ
Gao, W
Cao, XM
Chen, MS
AF Gao, Zhiqiang
Gao, Wei
Cao Xiaoming
Chen, Maosi
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI The analysis of net primary productivity in China based on GEOLUE model
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE China; model of Light Use Efficiency; Net Primary Product (NPP);
Simulation
ID GLOBAL CLIMATE-CHANGE; ECOSYSTEM PRODUCTION; SATELLITE; RESPONSES
AB GEOLUE model was designed with Light Use Efficiency (LUE) mechanism and was validated with observed data and models comparison (GLOPEM, CASA, and CEVSA). We found that: GEOLUE model correctly simulates monthly, quarterly and annual variation of Net Primary Product (NPP) in different vegetation communities under monsoon climate. The spatial distribution of NPP simulated by GEOLUE matched up to 96.67% with that of forest and shrub land. The GEOLUE model perfectly simulated the seasonal characteristics and spatial pattern of biomass in different types of vegetation. The total amount NPP of China simulated by GEOLUE is 0.667GtC in spring, 1.365GtC in summer, 0.587GtC in autumn and 0.221GtC in winter. The average total NPP of China for 5 years is 2.84GtC / year.
C1 [Gao, Zhiqiang] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China.
[Gao, Wei; Chen, Maosi] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO USA.
[Gao, Zhiqiang; Cao Xiaoming] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
RP Gao, ZQ (reprint author), Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China.
EM gaoland@gmail.com
RI Gao, Wei/C-1430-2016; Chen, Maosi/E-8230-2016
FU Natural Science Foundation of China [41171334, 41071278]; USDA NIFA
[2010-34263-21075]
FX The author are grateful for the support from Natural Science Foundation
of China ( 41171334, 41071278) and USDA NIFA project (
2010-34263-21075).
NR 19
TC 0
Z9 0
U1 0
U2 9
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 85130R
DI 10.1117/12.928296
PG 9
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600021
ER
PT S
AU Gao, ZQ
Gao, W
Cao, XM
Chen, MS
AF Gao, Zhiqiang
Gao, Wei
Cao Xiaoming
Chen, Maosi
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI The simulation of land surface process with MODIS data in Haihe basin,
China
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE Simulation; MODIS; Haihe Basin; China
ID ENERGY BALANCE ALGORITHM; NET PRIMARY PRODUCTION; 2-SOURCE MODEL;
VEGETATION; TEMPERATURES; VALIDATION; LANDSCAPE; SATELLITE; COVER
AB By using MODIS data products, combined with DEM data, land use data, meteorological data, employed SEBAL model, light use efficiency model, PAR model and the algorithm of vegetation index, the parameters of ET(Evapotranspiration), NPP(Net Primary Product), PAR (Photosynthetic Active Radiation), NDVI (Normalized Difference Vegetation Index) and EVI (Enhance Vegetation Index) in Haihe River Basin were estimated. The impacts of elevation and land cover change on ET, NPP, PAR, NDVI and EVI are analyzed. We found that the impacts of elevation and land cover change on parameters are significant. The conclusions are as follows: 1) The ET in areas below 500m is the biggest, the ET in areas above 1500m is bigger and the ET in areas between 500-1500 is the smallest. 2) The impacts of location and elevation on PAR are significant, the PAR in areas with lower elevation is smaller; with the rising of elevation, the PAR has a increasing trend. The difference of PAR in different land cover is caused with location and elevation. 3) The NPP, NDVI and EVI in areas between 20-800m are bigger, and the values of these parameters in others areas is smaller. 4) The NDVI, EVI and NPP in areas covered with farmland, grassland and forest are bigger, and the values of these parameters in areas covered with unused land, water body and built-up land are smaller.
C1 [Gao, Zhiqiang] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China.
[Gao, Wei; Chen, Maosi] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO USA.
[Gao, Zhiqiang; Cao Xiaoming] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
RP Gao, ZQ (reprint author), Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China.
EM gaoland@gmail.com
RI Gao, Wei/C-1430-2016; Chen, Maosi/E-8230-2016
FU Natural Science Foundation of China [41171334, 41071278]; USDA NIFA
[2010-34263-21075]
FX The author are grateful for the support from Natural Science Foundation
of China ( 41171334, 41071278) and USDA NIFA project ( 2010-34263-21075)
NR 16
TC 0
Z9 0
U1 0
U2 5
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR UNSP 85130Q
DI 10.1117/12.928295
PG 9
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600020
ER
PT S
AU Hunt, ER
Wang, LL
Qu, JJ
Hao, XJ
AF Hunt, E. Raymond, Jr.
Wang, Lingli
Qu, John J.
Hao, Xianjun
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI Remote sensing of fuel moisture content from the ratios of canopy water
indices with a foliar dry matter index
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE Normalized dry matter content; NDMI; PROSPECT; SAIL; Normalized
difference infrared index; NDII; Normalized difference water index; NDWI
ID MODEL INVERSION; VEGETATION; LEAF; REFLECTANCE; THICKNESS; IMAGERY;
LEAVES; RISK
AB Fuel moisture content (FMC) is an important variable for predicting the occurrence and spread of wildfire. Foliar FMC was calculated as the ratio of leaf foliar water content (C-w) and dry matter content (C-m). Recently, the normalized dry matter index (NDMI) was developed for the remote sensing of Cm using high-spectral resolution data. This study explored the potential for remote sensing of FMC using the ratio of various vegetation water indices with NDMI. For leaf-scale simulations, all index ratios were significantly related to FMC. For canopy-scale simulations, ratio indices of the normalized difference infrared index (NDII) and normalized difference water index (NDWI) with NDMI predicted FMC with R-2 values of 0.900 and 0.864, respectively. NDII/NDMI determined from leaf reflectance data had the highest correlation with FMC. Further investigation needs to be conducted to evaluate the effectiveness of this approach at canopy scales with airborne remote sensing data.
C1 [Hunt, E. Raymond, Jr.] USDA ARS, Hydrol & Remote Sensing Lab, BARC W, Bldg 007,Room 104,10300 Baltimore Ave, Beltsville, MD 20705 USA.
[Wang, Lingli; Qu, John J.; Hao, Xianjun] George Mason Univ, Dept Geog & Geoinformat Sci, Fairfax, VA 22030 USA.
RP Hunt, ER (reprint author), USDA ARS, Hydrol & Remote Sensing Lab, BARC W, Bldg 007,Room 104,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Raymond.Hunt@ars.usda.gov
NR 29
TC 0
Z9 0
U1 0
U2 3
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 851302
DI 10.1117/12.930077
PG 8
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600001
ER
PT S
AU Yi, W
Gao, ZQ
Li, ZH
Chen, MS
AF Yi, Wei
Gao, Zhiqiang
Li, Zhihua
Chen, Maosi
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI Land-use and land-cover sceneries in China: an application of Dinamica
EGO model
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE Dinamica EGO; China; Remote sensing; Simulation
ID AMAZONIAN COLONIZATION FRONTIER; CELLULAR-AUTOMATA; LANDSCAPE DYNAMICS;
PATTERNS
AB Land is an indispensable natural resource for human, without which we cannot survive and develop. Land-use change, influenced by both natural environment and human activity, has a close relationship with food security, resource utilization, biodiversity and climate change. In order to understand the process and driving mechanism of land-use change, dynamic models were developed in these years, among which Dinamica EGO is a practical one and has been widely used in the world. In this paper, we aim to use Dinamica EGO to simulate the land-use of China in 2005 with data extracted from SPOT VGT NDVI. The real land-use map was compared with the simulation result so as to verify the feasibility of Dinamica EGO. Then we supposed three sceneries under which we could analyze the land-use change of China in 2020. Results indicated that: on the basis of no extreme natural disasters or exceptional policy fluctuation, the grassland area would reduce by 22.21 million hectares averagely. However forest would increase by 19.81 billion hectares on average. Water and unused land would probably remain stable as there was little change in three sceneries. Farmland areas showed a good agreement under these sceneries whereas the greatest difference in land-use area estimations lies in built-up with an uncertainty accounting for 1.67%.
C1 [Yi, Wei; Gao, Zhiqiang] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
[Yi, Wei] Grad Univ Chinese Acad Sci, Beijing, Peoples R China.
[Gao, Zhiqiang; Chen, Maosi] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO USA.
[Li, Zhihua] East China Normal Univ, Minist Educ, Key Lab Geog Informat Sci, Shanghai, Peoples R China.
RP Gao, ZQ (reprint author), Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
EM gaoland@gmail.com
RI Chen, Maosi/E-8230-2016
FU Natural Science Foundation of China [41171334, 41071278]; USDA NIFA
[2010-34263-21075]
FX The author are grateful for the support from Natural Science Foundation
of China ( 41171334,41071278) and USDA NIFA project ( 2010-34263-21075)
NR 20
TC 0
Z9 0
U1 1
U2 11
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 85130I
DI 10.1117/12.927782
PG 7
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600014
ER
PT S
AU Yi, W
Gao, ZQ
Chen, MS
AF Yi, Wei
Gao, Zhiqiang
Chen, Maosi
BE Gao, W
Jackson, TJ
Wang, J
Chang, NB
TI Dynamic modelling of future land-use change: a comparison between CLUE-S
and Dinamica EGO models
SO REMOTE SENSING AND MODELING OF ECOSYSTEMS FOR SUSTAINABILITY IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Remote Sensing and Modeling of Ecosystems for
Sustainability IX
CY AUG 16, 2012
CL San Diego, CA
SP SPIE
DE Dinamica EGO; CLUE-S; Dynamic modelling; land-use change
ID CLIMATE
AB Land-use and land-cover change has been a research focus in global environmental change. Recent research found that land-use change could influence the structure of biogeochemical spheres as well as material and energy recycle directly or indirectly. Land-use dynamic models are considered as an effective technique to study the processes of land-use modification. The objective of this paper is to compare two widely use land-use dynamic models, CLUE-S and Dinamica EGO, from the perspective of land-use change amount, spatial characteristics, and their utility. A case study was conducted to examine the ascendants of each model and Kappa coefficient was used to compare the simulation accuracy. The modelling experiments reflected that the predictions of land-use change based on CLUE-S and Dinamica EGO matched broadly with actual situation. CLUE-S was better in overall accuracy whereas the Markov process in Dinamica EGO could precisely predict the amount of land-use change. Moreover, the spatial pattern of simulation map based on Dinamica EGO was more consistent with empirical result. Both results indicate their possible further applicability for forecasting future land-use change and corresponding studies.
C1 [Yi, Wei; Gao, Zhiqiang] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
[Yi, Wei] Grad Univ Chinese Acad Sci, Beijing, Peoples R China.
[Gao, Zhiqiang; Chen, Maosi] Colorado State Univ, USDA UV B Monitoring & Res Program, Nat Resource Ecol Lab, Ft Collins, CO USA.
RP Gao, ZQ (reprint author), Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing, Peoples R China.
EM gaoland@gmail.com
RI Chen, Maosi/E-8230-2016
FU Natural Science Foundation of China [41171334, 41071278]; USDA NIFA
project [2010-34263-21075]
FX The author are grateful for the support from Natural Science Foundation
of China ( 41171334,41071278) and USDA NIFA project ( 2010-34263-21075)
NR 20
TC 0
Z9 0
U1 2
U2 20
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9230-2
J9 PROC SPIE
PY 2012
VL 8513
AR 85130H
DI 10.1117/12.927781
PG 7
WC Remote Sensing; Optics
SC Remote Sensing; Optics
GA BDA65
UT WOS:000312366600013
ER
PT S
AU Hoberg, EP
Galbreath, KE
Cook, JA
Kutz, SJ
Pottey, L
AF Hoberg, Eric P.
Galbreath, Kurt E.
Cook, Joseph A.
Kutz, Susan J.
Pottey, Lydden
BE Rollinson, D
Hay, SI
TI Northern Host-Parasite Assemblages: History and Biogeography on the
Borderlands of Episodic Climate and Environmental Transition
SO ADVANCES IN PARASITOLOGY, VOL 79
SE Advances in Parasitology
LA English
DT Review; Book Chapter
ID N. SP CESTODA; COLLARED LEMMINGS DICROSTONYX; PARANOPLOCEPHALA SPP.
CESTODA; PALEARCTIC MICROTINE RODENTS; MITOCHONDRIAL-DNA SEQUENCES;
CARIBOU RANGIFER-TARANDUS; CUTICULAR RIDGE-PATTERNS; CRYPTIC GLACIAL
REFUGIA; OX OVIBOS-MOSCHATUS; BEARS URSUS-ARCTOS
AB Diversity among assemblages of mammalian hosts and parasites in northern terrestrial ecosystems was structured by a deep history of biotic and abiotic change that overlies a complex geographic arena. Since the Pliocene, Holarctic ecosystems assembled in response to shifting climates (glacial and interglacial stages). Cycles of episodic dispersal/isolation and diversification defined northern diversity on landscape to regional scales. Episodes of geographic expansion and colonisation linked Eurasia and North America across Beringia and drove macroevolutionary structure of host and parasite associations. Asynchronous dispersal from centres of origin in Eurasia into the Nearctic resulted in gradients in parasite diversity in the carnivoran, lagomorph, rodent and artiodactyl assemblages we reviewed. Recurrent faunal interchange and isolation in conjunction with episodes of host colonisation have produced a mosaic structure for parasite faunas and considerable cryptic diversity among nematodes and cestodes. Mechanisms of invasion and geographic colonisation leading to the establishment of complex faunal assemblages are equivalent in evolutionary and ecological time, as demonstrated by various explorations of diversity in these high-latitude systems. Our ability to determine historical responses to episodic shifts in global climate may provide a framework for predicting the cascading effects of contemporary environmental change.
C1 [Hoberg, Eric P.] ARS, Anim Parasit Dis Lab, USDA, Beltsville, MD 20705 USA.
[Galbreath, Kurt E.] No Michigan Univ, Dept Biol, Marquette, MI 49855 USA.
[Cook, Joseph A.] Univ New Mexico, Museum SW Biol, Albuquerque, NM 87131 USA.
[Cook, Joseph A.] Univ New Mexico, Dept Biol, Albuquerque, NM 87131 USA.
[Kutz, Susan J.] Univ Calgary, Fac Vet Med, Calgary, AB, Canada.
[Pottey, Lydden] Univ Saskatchewan, Western Coll Vet Med, Saskatoon, SK S7N 0W0, Canada.
RP Hoberg, EP (reprint author), ARS, Anim Parasit Dis Lab, USDA, Beltsville, MD 20705 USA.
OI Cook, Joseph/0000-0003-3985-0670
NR 336
TC 39
Z9 44
U1 4
U2 33
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0065-308X
BN 978-0-12-398457-9
J9 ADV PARASIT
JI Adv.Parasitol.
PY 2012
VL 79
BP 1
EP 97
DI 10.1016/B978-0-12-398457-9.00001-9
PG 97
WC Parasitology
SC Parasitology
GA BBU22
UT WOS:000308187500001
PM 22726642
ER
PT S
AU Kutz, SJ
Ducrocq, J
Verocai, GG
Hoar, BM
Colwell, DD
Beckmen, KB
Polley, L
Elkin, BT
Hoberg, EP
AF Kutz, Susan J.
Ducrocq, Julie
Verocai, Guilherme G.
Hoar, Bryanne M.
Colwell, Doug D.
Beckmen, Kimberlee B.
Polley, Lydden
Elkin, Brett T.
Hoberg, Eric P.
BE Rollinson, D
Hay, SI
TI Parasites in Ungulates of Arctic North America and Greenland: A View of
Contemporary Diversity, Ecology, and Impact in a World Under Change
SO ADVANCES IN PARASITOLOGY, VOL 79
SE Advances in Parasitology
LA English
DT Review; Book Chapter
ID REINDEER RANGIFER-TARANDUS; MOOSE ALCES-ALCES; WHITE-TAILED DEER;
PARELAPHOSTRONGYLUS-ODOCOILEI NEMATODA; SHEEP OVIS-DALLI; MUSKOXEN
OVIBOS-MOSCHATUS; BARREN-GROUND CARIBOU; CUTICULAR RIDGE-PATTERNS;
MOUNTAIN BIGHORN SHEEP; UMINGMAKSTRONGYLUS-PALLIKUUKENSIS NEMATODA
AB Parasites play an important role in the structure and function of arctic ecosystems, systems that are currently experiencing an unprecedented rate of change due to various anthropogenic perturbations, including climate change. Ungulates such as muskoxen, caribou, moose and Dall's sheep are also important components of northern ecosystems and are a source of food and income, as well as a focus for maintenance of cultural traditions, for northerners. Parasites of ungulates can influence host health, population dynamics and the quality, quantity and safety of meat and other products of animal origin consumed by people. In this article, we provide a contemporary view of the diversity of nematode, cestode, trematode, protozoan and arthropod parasites of ungulates in arctic and subarctic North America and Greenland. We explore the intricate associations among host and parasite assemblages and identify key issues and gaps in knowledge that emerge in a regime of accelerating environmental transition.
C1 [Kutz, Susan J.; Ducrocq, Julie; Verocai, Guilherme G.; Hoar, Bryanne M.] Univ Calgary, Fac Vet Med, Calgary, AB, Canada.
[Colwell, Doug D.] Agr & Agri Food Canada, Lethbridge, AB, Canada.
[Beckmen, Kimberlee B.] Alaska Dept Fish & Game, Div Wildlife Conservat, Fairbanks, AK USA.
[Polley, Lydden] Univ Saskatchewan, Western Coll Vet Med, Saskatoon, SK S7N 0W0, Canada.
[Elkin, Brett T.] Govt NW Terr, Yellowknife, NT, Canada.
[Hoberg, Eric P.] ARS, Anim Parasit Dis Lab, USDA, Beltsville, MD USA.
RP Kutz, SJ (reprint author), Univ Calgary, Fac Vet Med, Calgary, AB, Canada.
NR 587
TC 16
Z9 25
U1 7
U2 92
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0065-308X
BN 978-0-12-398457-9
J9 ADV PARASIT
JI Adv.Parasitol.
PY 2012
VL 79
BP 99
EP 252
DI 10.1016/B978-0-12-398457-9.00002-0
PG 154
WC Parasitology
SC Parasitology
GA BBU22
UT WOS:000308187500002
PM 22726643
ER
PT S
AU Nelson, DC
Schmelcher, M
Rodriguez-Rubio, L
Klumpp, J
Pritchard, DG
Dong, SL
Donovan, DM
AF Nelson, Daniel C.
Schmelcher, Mathias
Rodriguez-Rubio, Lorena
Klumpp, Jochen
Pritchard, David G.
Dong, Shengli
Donovan, David M.
BE Lobocka, M
Szybalski, WT
TI Endolysins as Antimicrobials
SO ADVANCES IN VIRUS RESEARCH, VOL 83: BACTERIOPHAGES, PT B
SE Advances in Virus Research
LA English
DT Review; Book Chapter
ID RESISTANT STAPHYLOCOCCUS-AUREUS; PNEUMOCOCCAL CELL-WALL;
BACILLUS-AMYLOLIQUEFACIENS PHAGE; PEPTIDOGLYCAN CROSS-BRIDGES;
BACTERIOPHAGE LYTIC ENZYME; OUTER-MEMBRANE PERMEABILITY; AORTIC-VALVE
ENDOCARDITIS; LACTIC-ACID BACTERIA; GROUP-B STREPTOCOCCI; C-TERMINAL
DOMAIN
AB Peptidoglycan (PG) is the major structural component of the bacterial cell wall. Bacteria have autolytic PG hydrolases that allow the cell to grow and divide. A well-studied group of PG hydrolase enzymes are the bacteriophage endolysins. Endolysins are PG-degrading proteins that allow the phage to escape from the bacterial cell during the phage lytic cycle. The endolysins, when purified and exposed to PG externally, can cause "lysis from without." Numerous publications have described how this phenomenon can be used therapeutically as an effective antimicrobial against certain pathogens. Endolysins have a characteristic modular structure, often with multiple lytic and/or cell wall-binding domains (CBDs). They degrade the PG with glycosidase, amidase, endopeptidase, or lytic transglycosylase activities and have been shown to be synergistic with fellow PG hydrolases or a range of other antimicrobials. Due to the coevolution of phage and host, it is thought they are much less likely to invoke resistance. Endolysin engineering has opened a range of new applications for these proteins from food safety to environmental decontamination to more effective antimicrobials that are believed refractory to resistance development. To put phage endolysin work in a broader context, this chapter includes relevant studies of other well-characterized PG hydrolase antimicrobials.
C1 [Donovan, David M.] ARS, Anim Biosci & Biotechnol Lab, ANRI, USDA, Beltsville, MD USA.
[Nelson, Daniel C.] Univ Maryland, Inst Biosci & Biotechnol Res, Rockville, MD USA.
[Nelson, Daniel C.] Univ Maryland, Virginia Maryland Reg Coll Vet Med, Dept Vet Med, College Pk, MD 20742 USA.
[Rodriguez-Rubio, Lorena] Inst Prod Lacteos Asturias IPLA CSIC, Villaviciosa, Asturias, Spain.
[Klumpp, Jochen] ETH, Inst Food Nutr & Hlth, Zurich, Switzerland.
[Pritchard, David G.; Dong, Shengli] Univ Alabama Birmingham, Dept Biochem & Mol Genet, Birmingham, AL USA.
RP Donovan, DM (reprint author), ARS, Anim Biosci & Biotechnol Lab, ANRI, USDA, Beltsville, MD USA.
EM nelsond@umd.edu; mathias.schmelcher@hest.ethz.ch;
lorenarguez@ipla.csic.es; jochen.klurnpp@hest.ethz.ch;
pritchard_d@bellsouth.net; sdong@lsuhsc.edu; david.donovan@ars.usda.gov
RI Klumpp, Jochen/D-1127-2010; Nelson, Daniel/I-2198-2012; Klumpp,
Jochen/A-5415-2011; Rodriguez-Rubio, Lorena/D-2888-2017
OI Klumpp, Jochen/0000-0003-3410-2702; Klumpp, Jochen/0000-0003-3410-2702;
Rodriguez-Rubio, Lorena/0000-0002-7846-4791
FU NIAID NIH HHS [1R01AI075077-01A1]
NR 211
TC 71
Z9 73
U1 6
U2 69
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0065-3527
BN 978-0-12-394438-2
J9 ADV VIRUS RES
JI Adv.Virus Res.
PY 2012
VL 83
BP 299
EP 365
DI 10.1016/B978-0-12-394438-2.00007-4
PG 67
WC Virology
SC Virology
GA BBG97
UT WOS:000306815600007
PM 22748813
ER
PT J
AU Cisneros, R
Schweizer, D
Zhong, SR
Hammond, K
Perez, MA
Guo, QH
Traina, S
Bytnerowicz, A
Bennett, DH
AF Cisneros, Ricardo
Schweizer, Donald
Zhong, Sharon
Hammond, Katharine
Perez, Miguel A.
Guo, Qinghua
Traina, Samuel
Bytnerowicz, Andrzej
Bennett, Deborah H.
TI Analysing the effects of the 2002 McNally fire on air quality in the San
Joaquin Valley and southern Sierra Nevada, California
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE ozone; particulate matter; smoke
ID CANADIAN FOREST-FIRES; UNITED-STATES; POLLUTION; OZONE; EMISSIONS;
TRANSPORT; SMOKE
AB Smoke from wildfires can expose individuals and populations to elevated levels of particulate matter (PM) and ozone (O-3). Between 21 July and 26 August 2002, the McNally Fire burned over 150 000 acres (61 000 ha). The fire occurred in the Sequoia National Forest, in the southern Sierra Nevada of California. This study evaluated the effects of the McNally Fire on air quality, specifically particles, 10 m mu in diameter (PM10) and O-3. Downwind of the fire on the eastern side of the Sierra Nevada, 24-h concentrations of PM10 more than doubled. The PM10 federal standard was exceeded four times during the fire. Violations of the California PM10 standard increased drastically during the fire. The California PM10 standard was violated six times before the fire and 164 times during the fire. Most of the PM10 exceedances occurred at the Kernville Work Center and sites east of the fire. Compared with the other sites, the highest 2-week average O-3 concentrations occurred in the eastern part of the Sierra Nevada and north of the fire, where O-3 increased by a factor of two at two locations.
C1 [Cisneros, Ricardo; Schweizer, Donald] USDA Forest Serv, Air Program, Clovis, CA 93257 USA.
[Zhong, Sharon] Michigan State Univ, Dept Geog, E Lansing, MI 48824 USA.
[Hammond, Katharine] Univ Calif Berkeley, Sch Publ Hlth, Environm Hlth Sci Div, Berkeley, CA 95720 USA.
[Perez, Miguel A.] Calif State Univ Fresno, Dept Publ Hlth, Fresno, CA 93740 USA.
[Guo, Qinghua; Traina, Samuel] Univ Calif Merced, Environm Syst Grad Grp, Sierra Nevada Res Inst, Merced, CA 95343 USA.
[Bytnerowicz, Andrzej] USDA Forest Serv, Pacific SW Res Stn, Riverside, CA 92507 USA.
[Bennett, Deborah H.] Univ Calif Davis, Dept Publ Hlth Sci, Davis, CA 95616 USA.
RP Cisneros, R (reprint author), USDA Forest Serv, Air Program, Reg 5,1600 Tollhouse Rd, Clovis, CA 93257 USA.
EM rcisneros@ucmerced.edu; dschweizer@fs.fed.us; zhongs@msu.edu;
hammondk@berkeley.edu; mperez@csufresno.edu; qguo@ucmerced.edu;
straina@ucmerced.edu; abytnerowicz@fs.fed.us; dbennett@ucdavis.edu
NR 32
TC 5
Z9 5
U1 0
U2 14
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 8
BP 1065
EP 1075
DI 10.1071/WF11025
PG 11
WC Forestry
SC Forestry
GA 043PV
UT WOS:000311557400014
ER
PT J
AU Rosenberg, IH
AF Rosenberg, Irwin H.
TI A History of the Isolation and Identification of Folic Acid (Folate)
SO ANNALS OF NUTRITION AND METABOLISM
LA English
DT Article
DE Anemia; Diet; Folate; Folic acid; Isolation; Pteroylglutamic acid
ID SOLID-PHASE SYNTHESIS; NUTRITIONAL CYTOPENIA; MACROCYTIC ANEMIAS;
GROWTH-FACTOR; POLYGLUTAMATES; DEFICIENCY; METABOLISM; CHICKS; MONKEY
AB In the 1930s, Lucy Wills identified a 'new hemopoietic factor' in yeast and liver which cured tropical macrocytic anemia in humans and experimental anemia in monkeys. Janet Watson and William B. Castle named the unknown substance, which would ultimately become a form of folate, 'Wills' factor'. Further studies with this unknown substance showed that it was active against nutritional pancytopenia in monkeys and experimental anemia in chicks, leading to various designations such as vitamin M (monkey) and vitamin Bc (chick). Other factors with growth-promoting activity for microorganisms such as Lactobacillus casei were given the interim names including folic acid in recognition of extracts from leafy greens. Competing pharmaceutical research groups headed by Robert Stokstad at Lederle Laboratories and Joseph John Pfiffner at Parke-Davis Research Laboratory independently isolated factors bearing the biological properties of Wills' factor and other unknown related factors including folic acid, Lederle Laboratories from a bacterial culture and Parke-Davis Laboratory from yeast and liver as a conjugate of folate. The new vitamin then was crystallized, chemically identified, and synthesized as pteroylglutamic acid and named folic acid between 1943 and 1945. Further studies of the monoglutamic folic acid and the yeast isolate polyglutamyl folate followed through the 1950s and to the present. Copyright (C) 2012 S. Karger AG, Basel
C1 [Rosenberg, Irwin H.] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Rosenberg, Irwin H.] Tufts Univ, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
RP Rosenberg, IH (reprint author), Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM irwin.rosenberg@tufts.edu
NR 39
TC 2
Z9 2
U1 6
U2 23
PU KARGER
PI BASEL
PA ALLSCHWILERSTRASSE 10, CH-4009 BASEL, SWITZERLAND
SN 0250-6807
J9 ANN NUTR METAB
JI Ann. Nutr. Metab.
PY 2012
VL 61
IS 3
SI SI
BP 231
EP 235
DI 10.1159/000343112
PG 5
WC Endocrinology & Metabolism; Nutrition & Dietetics
SC Endocrinology & Metabolism; Nutrition & Dietetics
GA 045QK
UT WOS:000311711700008
PM 23183294
ER
PT J
AU Rosenberg, IH
AF Rosenberg, Irwin H.
TI A History of the Isolation and Identification of Vitamin B-6
SO ANNALS OF NUTRITION AND METABOLISM
LA English
DT Article
DE Discovery; Isolation; Pyridoxal; Pyridoxamine; Pyridoxine; Vitamin B-6
ID PYRIDOXINE; RATS; DERMATITIS; B-4
AB In the 1930s, Rudolf Peters showed that young rats kept on a semi-synthetic diet with added thiamin and riboflavin but no other supplement developed 'rat acrodynia', a condition characterized by severe cutaneous lesions. In 1934, Paul Gyorgy showed that the factor which cured 'rat acrodynia' was vitamin B-6. Other studies soon showed that vitamin B6 deficiency produced convulsions in rats, pigs, and dogs, and a microcytic anemia in certain animals. Samuel Lepkovsky isolated and crystallized vitamin B-6 in 1938. The following year, Leslie Harris and Karl Folkers, and Richard Kuhn and his associates independently showed that vitamin B6 was a pyridine derivative, 3-hydroxy-4,5-dihydroxy-methy1-2-methyl-pyridine. Gyorgy proposed the term pyridoxine for this derivative. Esmond Snell developed a microbiological growth assay in 1942 that led to the characterization of pyridoxamine, the animated product of pyridoxine, and pyridoxal, the formyl derivative of pyridoxine. Further studies showed that pyridoxal, pyridoxamine, and pyridoxine have largely equal activity in animals and owe their vitamin activity to the ability of the organism to convert them into the enzymatically active form pyridoxal-5-phosphate. Pyridoxal-5-phosphate plays a role in a wide variety of enzyme systems, especially in the metabolic utilization and transformation of amino acids. Copyright (C) 2012 S. Karger AG, Basel
C1 [Rosenberg, Irwin H.] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Rosenberg, Irwin H.] Tufts Univ, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
RP Rosenberg, IH (reprint author), Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM irwin.rosenberg@tufts.edu
NR 22
TC 5
Z9 6
U1 0
U2 13
PU KARGER
PI BASEL
PA ALLSCHWILERSTRASSE 10, CH-4009 BASEL, SWITZERLAND
SN 0250-6807
J9 ANN NUTR METAB
JI Ann. Nutr. Metab.
PY 2012
VL 61
IS 3
SI SI
BP 236
EP 238
DI 10.1159/000343113
PG 3
WC Endocrinology & Metabolism; Nutrition & Dietetics
SC Endocrinology & Metabolism; Nutrition & Dietetics
GA 045QK
UT WOS:000311711700009
PM 23183295
ER
PT J
AU Segerholm, BK
Ibach, RE
Westin, M
AF Segerholm, B. Kristoffer
Ibach, Rebecca E.
Westin, Mats
TI MOISTURE SORPTION, BIOLOGICAL DURABILITY, AND MECHANICAL PERFORMANCE OF
WPC CONTAINING MODIFIED WOOD AND POLYLACTATES
SO BIORESOURCES
LA English
DT Article
DE Acetylation; Thermal modification; Polylactate; Moisture; Biological
durability; Wood plastic composite
ID ACETYLATION; COMPOSITES
AB Biological durability is an important feature for wood-plastic composites (WPC) intended for outdoor applications. One route to achieving WPC products with increased biological durability is to use wood preservative agents in the formulation of the WPC. Another option could be to use a chemically modified wood component that already exhibits increased resistance to biological degradation. There is also a need to use biobased thermoplastics made from renewable resources, which would decrease the dependency on petrochemically-produced thermoplastics in the future. The objective of this study was to examine moisture sorption properties, biological durability, and mechanical performance of injection-molded WPC samples based on acetylated or thermally modified wood components and a polylactate matrix. The biological durability was evaluated in a terrestrial microcosm (TMC) test according to ENV 807, followed by mechanical evaluation in a center point bending test. The moisture sorption properties were investigated via both water soaking and exposure in a high-humidity climate. Low or negligible mass losses were observed in the TMC test for all WPC samples. However, the mechanical evaluation after exposure in the TMC test showed 35-40% losses in both strength and stiffness for the WPC containing an unmodified wood component.
C1 [Segerholm, B. Kristoffer] KTH Royal Inst Technol, Div Bldg Mat, SE-10044 Stockholm, Sweden.
[Segerholm, B. Kristoffer] SP Tech Res Inst Sweden, SE-11486 Stockholm, Sweden.
[Ibach, Rebecca E.] Forest Prod Lab, Madison, WI 53726 USA.
[Westin, Mats] SP Tech Res Inst Sweden, SE-50115 Boras, Sweden.
RP Segerholm, BK (reprint author), KTH Royal Inst Technol, Div Bldg Mat, SE-10044 Stockholm, Sweden.
EM kristoffer.segerholm@byv.kth.se
OI Segerholm, Kristoffer/0000-0001-7014-6230
NR 22
TC 22
Z9 22
U1 0
U2 14
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 4
BP 4575
EP 4585
PG 11
WC Materials Science, Paper & Wood
SC Materials Science
GA 040QD
UT WOS:000311336800010
ER
PT J
AU Chen, W
Marchant, MA
Muhammad, A
AF Chen, Wei
Marchant, Mary A.
Muhammad, Andrew
TI China's soybean product imports: an analysis of price effects using a
production system approach
SO CHINA AGRICULTURAL ECONOMIC REVIEW
LA English
DT Article
DE China; Soybean imports; Differential production approach; Conditional
elasticities; Unconditional elasticities; Imports; Exports
ID DIFFERENTIAL APPROACH; INTERNATIONAL-TRADE; EU DEMAND; IMPACT; EXPORTS;
MARKET
AB Purpose - The purpose of this paper is to estimate China's demand for imported soybeans and soybean oil from both country-of-origin and product form perspectives.
Design/methodology/approach - A differential production approach is used to estimate China's demand for imported soybeans and soybean oil. The empirical demand estimates are then used to derive conditional and unconditional elasticities of demand for each exporting country with respect to changes in domestic and import prices, and the price of resources used in soybean meal and oil production.
Findings - Results indicate that both country-of-origin and product form competition exist in the Chinese market. Estimation results indicate that China's soybean meal prices significantly impacted its soybean and soybean oil imports. Seasonality is detected in China's soybean imports, but not in soybean oil imports.
Practical implications - The findings suggest that, in addition to country-of-origin competition, product form competition should be considered when analyzing China's soybean demand.
Originality/value - This paper contributes to a better understanding of China's soybean import market by integrating both country-of-origin competition and product form competition into a single demand framework.
C1 [Chen, Wei] Shanghai Univ Finance & Econ, Sch Publ Econ & Adm, Shanghai, Peoples R China.
[Marchant, Mary A.] Virginia Tech, Dept Agr & Appl Econ, Food & Agr Educ Informat Syst, Agr & Appl Econ, Blacksburg, VA USA.
[Muhammad, Andrew] Econ Res Serv, Market & Trade Econ Div, USDA, Washington, DC USA.
RP Chen, W (reprint author), Shanghai Univ Finance & Econ, Sch Publ Econ & Adm, Shanghai, Peoples R China.
EM chen.wei@mail.shufe.edu.cn
FU USDA National Research Initiative (NRI) Competitive Grants Program
[2005-35400-15413]; Leading Academic Discipline Program; 211 Project for
Shanghai University of Finance and Economics [2009330194]
FX This research is funded by the USDA National Research Initiative (NRI)
Competitive Grants Program as grant #2005-35400-15413. The authors are
grateful to Drs Francis Tuan, James Hansen, Bill Lin, Nicholas
Kalaitzandonakes and Agapi Somwaru for their valuable insights on the
research. Wei Chen appreciates Leading Academic Discipline Program, 211
Project for Shanghai University of Finance and Economics (Project Number
2009330194) for providing support for this research. The views expressed
in this paper are those of the authors, and may not be attributed to the
Economic Research Service or the US Department of Agriculture.
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PU EMERALD GROUP PUBLISHING LIMITED
PI BINGLEY
PA HOWARD HOUSE, WAGON LANE, BINGLEY BD16 1WA, W YORKSHIRE, ENGLAND
SN 1756-137X
J9 CHINA AGR ECON REV
JI China Agric. Econ. Rev.
PY 2012
VL 4
IS 4
BP 499
EP 513
DI 10.1108/17561371211284849
PG 15
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA 044YC
UT WOS:000311660100008
ER
PT J
AU Zelinka, SL
Rammer, DR
AF Zelinka, Samuel L.
Rammer, Douglas R.
TI Modeling the Effect of Nail Corrosion on the Lateral Strength of Joints
SO FOREST PRODUCTS JOURNAL
LA English
DT Article
ID TREATED WOOD; FASTENERS; ENVIRONMENTS; RESISTANCE; MOISTURE; RATES
AB This article describes a theoretical method of linking fastener corrosion in wood connections to potential reduction in lateral shear strength. It builds upon published quantitative data of corrosion rates of metals in contact with treated wood for several different wood preservatives. These corrosion rates are then combined with yield theory equations to calculate a loss in lateral capacity as a function of time. The calculations are straightforward and can be performed in a spreadsheet or simple computer program. They can accommodate time-dependent and moisture-dependent corrosion rates. The latter of these capabilities can easily be recognized as important, inasmuch as corrosion rates of fasteners are recognized as being dependent on moisture content of the wood in which they are embedded. The calculation method is dependent on corrosion rate, and the method is therefore limited by the lack of agreement in corrosion rates presented in the literature. Within these limitations, the article examines how different corrosion rates and changes in corrosion rates affect the mechanical properties and service life of nailed wood joints.
C1 [Zelinka, Samuel L.; Rammer, Douglas R.] US Forest Serv, USDA, Forest Prod Lab, Madison, WI USA.
RP Zelinka, SL (reprint author), US Forest Serv, USDA, Forest Prod Lab, Madison, WI USA.
EM szelinka@fs.fed.us; drammer@fs.fed.us
FU Federal Highway Administration Covered Bridge Research Program
FX The authors acknowledge funding from the Federal Highway Administration
Covered Bridge Research Program. The authors thank Charles Carll and
William J. Feist for constructive feedback.
NR 34
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PU FOREST PRODUCTS SOC
PI MADISON
PA 2801 MARSHALL COURT, MADISON, WI 53705-2295 USA
SN 0015-7473
J9 FOREST PROD J
JI For. Prod. J.
PY 2012
VL 62
IS 3
BP 160
EP 166
PG 7
WC Forestry; Materials Science, Paper & Wood
SC Forestry; Materials Science
GA 035GE
UT WOS:000310930600001
ER
PT J
AU Lu, JX
Jiang, JL
Wu, YQ
Li, XJ
Cai, ZY
AF Lu, Jianxiong
Jiang, Jiali
Wu, Yiqiang
Li, Xianjun
Cai, Zhiyong
TI Effect of Moisture Sorption State on Vibrational Properties of Wood
SO FOREST PRODUCTS JOURNAL
LA English
DT Article
ID SUGAR MAPLE WOOD; MECHANICAL-PROPERTIES; CREEP BEHAVIORS; HARDWOODS
AB The purpose of this study was to investigate the vibrational properties and corresponding anisotropicity in wood during different states of moisture sorption. Samples of maple (Acer spp.) and red oak (Quercus rubra Michx.f.) were moisture conditioned by the adsorption process from an ovendried state and by the desorption process from a water-saturated state. The dynamic modulus of elasticity (DMOE) and logarithmic decrement (delta) were examined as a function of grain orientation during moisture change processes and under constant moisture contents (MC). It was observed that regardless of species and grain direction, the DMOE and delta were lower and higher, respectively, during the moisture change process compared with those measured without a change in MC. The increase in delta value during adsorption was greater than that during desorption. These results suggest that wood in an unstable state shows lower elasticity and strength and higher damping properties than wood in an equilibrium state. Furthermore, results of this study demonstrate that a greater adsorption rate leads to greater destabilization during an adsorption process. The anisotropy in vibrational properties was found to vary between two species.
C1 [Lu, Jianxiong; Wu, Yiqiang; Li, Xianjun] Cent S Univ Forestry & Technol China, Coll Mat Sci & Engn, Changsha, Peoples R China.
[Lu, Jianxiong; Jiang, Jiali] Chinese Acad Forestry, Key Lab Wood Sci & Technol State Forestry Admin, Res Inst Wood Ind, Beijing, Peoples R China.
[Cai, Zhiyong] US Forest Serv, Forest Prod Lab, USDA, Madison, WI 53705 USA.
RP Lu, JX (reprint author), Cent S Univ Forestry & Technol China, Coll Mat Sci & Engn, Changsha, Peoples R China.
EM jianxiong@caf.ac.cn; jialiwood@caf.ac.cn; wuyq0506@126.com;
lxjmu@163.com; zcai@fs.fed.us
FU National Natural Science Foundation of China [30825034]
FX This work was supported by the National Natural Science Foundation of
China (30825034).
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U1 0
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PU FOREST PRODUCTS SOC
PI MADISON
PA 2801 MARSHALL COURT, MADISON, WI 53705-2295 USA
SN 0015-7473
J9 FOREST PROD J
JI For. Prod. J.
PY 2012
VL 62
IS 3
BP 171
EP 176
PG 6
WC Forestry; Materials Science, Paper & Wood
SC Forestry; Materials Science
GA 035GE
UT WOS:000310930600003
ER
PT J
AU Anderson, N
Chung, W
Loeffler, D
Jones, JG
AF Anderson, Nathaniel
Chung, Woodam
Loeffler, Dan
Jones, John Greg
TI A Productivity and Cost Comparison of Two Systems for Producing Biomass
Fuel from Roadside Forest Treatment Residues
SO FOREST PRODUCTS JOURNAL
LA English
DT Article
ID LOGGING RESIDUES; REDUCTION; TREES
AB Forest operations generate large quantities of forest biomass residues that can be used for production of bioenergy and bioproducts. However, a significant portion of recoverable residues are inaccessible to large chip vans, making use financially infeasible. New production systems must be developed to increase productivity and reduce costs to facilitate use of these materials. We present a comparison of two alternative systems to produce biomass fuel (i.e., "hog fuel") from forest residues that are inaccessible to chip vans: (1) forwarding residues in fifth-wheel end-dump trailers to a concentration yard, where they can be stored and then ground directly into chip vans, and (2) grinding residues on the treatment unit and forwarding the hog fuel in high-sided dump trucks to a concentration yard, where it can be stored and then reloaded into chip vans using a front-end loader. To quantify the productivity and costs of these systems, work study data were collected for both systems on the same treatment unit in northern Idaho in July 2009. With standard machine rate calculations, the observed costs from roadside to loaded chip van were $23.62 per bone dry ton (BDT) for slash forwarding and $24.52 BDT-1 for in-woods grinding. Results indicate that for harvest units with conditions similar to the test area, slash forwarding is most appropriate for sites with dispersed residues and long-distance in-woods grinder mobilization. For sites with densely piled roadside residues, in-wood grinding is likely to be a more productive and less costly option for residue recovery.
C1 [Anderson, Nathaniel; Jones, John Greg] US Forest Serv, USDA, Rocky Mt Res Sta, Missoula, MT USA.
[Chung, Woodam; Loeffler, Dan] Univ Montana, Missoula, MT 59812 USA.
RP Anderson, N (reprint author), US Forest Serv, USDA, Rocky Mt Res Sta, Missoula, MT USA.
EM nathanielmanderson@fs.fed.us; woodam.chung@umontana.edu;
drloeffler@fs.fed.us; jgjones@fs.fed.us
FU USDA Forest Service Rocky Mountain Research Station through the Agenda
2020 Initiative
FX The authors thank Potlatch Corporation, especially Josh Barnard and
Bryce Coulter, for their collaboration on this study and their generous
contribution of time and information. We also thank Mick Buell and
others at Jack Buell Trucking for their cooperation and assistance in
the field and willingness to integrate a research team into active
operations. Han-Sup Han and Hunter Harrill, Humboldt State University,
offered valuable insights into operations research and assisted in data
collection. Funding for this study was provided by the USDA Forest
Service Rocky Mountain Research Station through the Agenda 2020
Initiative, with in-kind support from Potlatch Corporation.
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PU FOREST PRODUCTS SOC
PI MADISON
PA 2801 MARSHALL COURT, MADISON, WI 53705-2295 USA
SN 0015-7473
J9 FOREST PROD J
JI For. Prod. J.
PY 2012
VL 62
IS 3
BP 222
EP 233
PG 12
WC Forestry; Materials Science, Paper & Wood
SC Forestry; Materials Science
GA 035GE
UT WOS:000310930600010
ER
PT J
AU Sermons, SM
Seversike, TM
Sinclair, TR
Fiscus, EL
Rufty, TW
AF Sermons, Shannon M.
Seversike, Thomas M.
Sinclair, Thomas R.
Fiscus, Edwin L.
Rufty, Thomas W.
TI Temperature influences the ability of tall fescue to control
transpiration in response to atmospheric vapour pressure deficit
SO FUNCTIONAL PLANT BIOLOGY
LA English
DT Article
DE drought; evapotranspiration; K-c
ID VULGARIS L. GENOTYPES; WATER-USE EFFICIENCY; KENTUCKY BLUEGRASS; CROP
COEFFICIENTS; STOMATAL CONDUCTANCE; FESTUCA-ARUNDINACEA; DROUGHT
AVOIDANCE; TURFGRASS; EVAPOTRANSPIRATION; IRRIGATION
AB Water availability for turfgrass systems is often limited and is likely to become more so in the future. Here, we conducted experiments that examined the ability of tall fescue (Festuca arundinacea Schreb.) to control transpiration with increasing vapour pressure deficit (VPD) and determined whether control was influenced by temperature. The first study was under steady-state conditions at two temperatures (21 and 27 degrees C) and two VPDs (1.2 and 1.8 kPa). At the lower temperature, water use was similar at both VPDs, indicating a restriction of transpiration at high VPD. At 27 degrees C, transpiration control at high VPD was weakened and root growth also declined; both responses increase susceptibility to water-deficit stress. Another series of experiments was used to examine the physiological stability of the transpiration control. Temperature and VPD were adjusted in a stepwise manner and transpiration measured across a range of VPD in the days following environmental shifts. Results indicated that VPD control acclimated to the growth environment, with adjustment to drier conditions becoming evident after similar to 1 week. Control was again more effective at cool than at hot temperatures. Collectively, the results indicate that transpiration control by this cool season grass is most effective in the temperature range where it is best adapted.
C1 [Sermons, Shannon M.; Sinclair, Thomas R.; Fiscus, Edwin L.; Rufty, Thomas W.] N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA.
[Seversike, Thomas M.] Syngenta Seeds, Pasco, WA 99301 USA.
[Fiscus, Edwin L.] ARS, USDA, Plant Sci Res Unit, Raleigh, NC 27603 USA.
RP Rufty, TW (reprint author), N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA.
EM tom_rufty@ncsu.edu
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PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1445-4408
J9 FUNCT PLANT BIOL
JI Funct. Plant Biol.
PY 2012
VL 39
IS 12
BP 979
EP 986
DI 10.1071/FP12172
PG 8
WC Plant Sciences
SC Plant Sciences
GA 046FQ
UT WOS:000311751300003
ER
PT J
AU Laseter, SH
Ford, CR
Vose, JM
Swift, LW
AF Laseter, Stephanie H.
Ford, Chelcy R.
Vose, James M.
Swift, Lloyd W., Jr.
TI Long-term temperature and precipitation trends at the Coweeta Hydrologic
Laboratory, Otto, North Carolina, USA
SO HYDROLOGY RESEARCH
LA English
DT Article
DE climate; long-term; precipitation; quantile regression; temperature;
time series
ID UNITED-STATES; CLIMATE-CHANGE; ECOLOGICAL SURPRISES; DROUGHT; GROWTH;
FOREST; CYCLE; EVOLUTION; FREQUENCY; IMPACTS
AB Coweeta Hydrologic Laboratory, located in western North Carolina, USA, is a 2,185 ha basin wherein forest climate monitoring and watershed experimentation began in the early 1930s. An extensive climate and hydrologic network has facilitated research for over 75 years. Our objectives in this paper were to describe the monitoring network, present long-term air temperature and precipitation data, and analyze the temporal variation in the long-term temperature and precipitation record. We found that over the period of record: (1) air temperatures have been increasing significantly since the late 1970s, (2) drought severity and frequency have increased with time, and (3) the precipitation distribution has become more extreme over time. We discuss the implications of these trends within the context of regional and global climate change and forest health.
C1 [Laseter, Stephanie H.; Ford, Chelcy R.; Vose, James M.; Swift, Lloyd W., Jr.] US Forest Serv, USDA, So Res Stn, Coweeta Hydrol Lab, Otto, NC USA.
RP Laseter, SH (reprint author), US Forest Serv, USDA, So Res Stn, Coweeta Hydrol Lab, 3160 Coweeta Lab Rd, Otto, NC USA.
EM slaseter@fs.fed.us
OI Miniat, Chelcy/0000-0002-3266-9783
FU United States Department of Agriculture Forest Service, Southern
Research Station; NSF [DEB0218001, DEB0823293]
FX This study was supported by the United States Department of Agriculture
Forest Service, Southern Research Station, and by NSF grants DEB0218001
and DEB0823293 to the Coweeta LTER program at the University of Georgia.
Any opinions, findings, conclusions, or recommendations expressed in the
material are those of the authors and do not necessarily reflect the
views of the National Science Foundation or the University of Georgia.
We acknowledge the support of many individuals, past and present,
including Wayne Swank, Charlie L. Shope, Charles Swafford, Neville
Buchanan, 'Zero' Shope, Bryant Cunningham, Bruce McCoy, Chuck Marshall,
Mark Crawford, and Julia Moore as well as the long-term climate and
hydrologic data network at the Coweeta Hydrologic Lab.
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PU IWA PUBLISHING
PI LONDON
PA ALLIANCE HOUSE, 12 CAXTON ST, LONDON SW1H0QS, ENGLAND
SN 1998-9563
J9 HYDROL RES
JI Hydrol. Res.
PY 2012
VL 43
IS 6
BP 890
EP 901
DI 10.2166/nh.2012.067
PG 12
WC Water Resources
SC Water Resources
GA 039PI
UT WOS:000311258600011
ER
PT J
AU Tobin, PC
Bai, BB
Eggen, DA
Leonard, DS
AF Tobin, Patrick C.
Bai, Barry B.
Eggen, Donald A.
Leonard, Donna S.
TI The ecology, geopolitics, and economics of managing Lymantria dispar in
the United States (vol 58, pg 195, 2012)
SO INTERNATIONAL JOURNAL OF PEST MANAGEMENT
LA English
DT Correction
C1 [Tobin, Patrick C.] US Forest Serv, USDA, No Res Stn, Morgantown, WV 26505 USA.
[Bai, Barry B.] Oregon Dept Agr, Plant Div, Salem, OR 97301 USA.
[Eggen, Donald A.] Penn Dept Conservat & Nat Resources, Bur Forestry, Div Forest Pest Management, Middletown, PA 17057 USA.
[Leonard, Donna S.] US Forest Serv, USDA, Asheville, NC 28802 USA.
RP Tobin, PC (reprint author), US Forest Serv, USDA, No Res Stn, Morgantown, WV 26505 USA.
NR 1
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U1 0
U2 3
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0967-0874
J9 INT J PEST MANAGE
JI Int. J. Pest Manage.
PY 2012
VL 58
IS 4
BP 378
EP 378
DI 10.1080/09670874.2012.741901
PG 1
WC Entomology
SC Entomology
GA 045MN
UT WOS:000311700600011
ER
PT S
AU Bouchard, C
Ordovas, JM
AF Bouchard, Claude
Ordovas, Jose M.
BE Bouchard, C
Ordovas, JM
TI Fundamentals of Nutrigenetics and Nutrigenomics
SO RECENT ADVANCES IN NUTRIGENETICS AND NUTRIGENOMICS
SE Progress in Molecular Biology and Translational Science
LA English
DT Review; Book Chapter
ID PERSONALIZED NUTRITION; INDIVIDUAL-DIFFERENCES; PHYSICAL-ACTIVITY;
IDENTICAL-TWINS; HUMAN-EVOLUTION; DIET; FOOD; BRAIN; GENE; INTERVENTION
C1 [Bouchard, Claude] Pennington Biomed Res Ctr, Human Genom Lab, Baton Rouge, LA USA.
[Ordovas, Jose M.] Tufts Univ, Nutr & Genom Lab, Jean Meyer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Bouchard, C (reprint author), Pennington Biomed Res Ctr, Human Genom Lab, Baton Rouge, LA USA.
RI Bouchard, Claude/A-7637-2009
NR 44
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U1 0
U2 39
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1877-1173
BN 978-0-12-398397-8
J9 PROG MOL BIOL TRANSL
JI Prog. Molec. Biol. Transl. Sci.
PY 2012
VL 108
BP 1
EP 15
DI 10.1016/B978-0-12-398397-8.00001-0
PG 15
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BBI04
UT WOS:000306934600001
PM 22656371
ER
PT S
AU Parnell, LD
AF Parnell, Laurence D.
BE Bouchard, C
Ordovas, JM
TI Advances in Technologies and Study Design
SO RECENT ADVANCES IN NUTRIGENETICS AND NUTRIGENOMICS
SE Progress in Molecular Biology and Translational Science
LA English
DT Review; Book Chapter
ID CROHNS-DISEASE SUSCEPTIBILITY; GENOME-WIDE ASSOCIATION; NUTRITIONAL
EPIDEMIOLOGY; CHOLESTEROL HOMEOSTASIS; CARDIOVASCULAR-DISEASE; GUT
MICROBIOME; EXPRESSION; MICRORNAS; DIET; METABOLISM
C1 Tufts Univ, Nutr Genom Lab, JM USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Parnell, LD (reprint author), Tufts Univ, Nutr Genom Lab, JM USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 102
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U1 2
U2 13
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1877-1173
BN 978-0-12-398397-8
J9 PROG MOL BIOL TRANSL
JI Prog. Molec. Biol. Transl. Sci.
PY 2012
VL 108
BP 17
EP 50
DI 10.1016/B978-0-12-398397-8.00002-2
PG 34
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BBI04
UT WOS:000306934600002
PM 22656372
ER
PT S
AU Lai, CQ
AF Lai, Chao-Qiang
BE Bouchard, C
Ordovas, JM
TI Adaptive Genetic Variation and Population Differences
SO RECENT ADVANCES IN NUTRIGENETICS AND NUTRIGENOMICS
SE Progress in Molecular Biology and Translational Science
LA English
DT Review; Book Chapter
ID ADULT LACTOSE INTOLERANCE; RECENT POSITIVE SELECTION; MULTILOCUS
GENOTYPE DATA; GENOME-WIDE ASSOCIATION; NATURAL-SELECTION; DNA-SEQUENCE;
CULTURAL INTERRELATIONS; EVOLUTIONARY GENETICS; LACTASE PERSISTENCE;
MOLECULAR EVOLUTION
AB Since the expansion of modern humans (Homo sapiens) from Africa to the rest of the world between 50,000 and 100,000 years ago, the human genome has been shaped not only by demographic history but also by adaptation to local environments, including regional climate, landscape, food sources, culture, and pathogens. Genetic differences among populations interact with environmental factors, such as diet and lifestyle, leading to differences in nutrient metabolism, which translate into differences in susceptibility to a variety of diseases.
C1 Tufts Univ, Nutr & Genom Lab, Jean Meyer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Lai, CQ (reprint author), Tufts Univ, Nutr & Genom Lab, Jean Meyer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 144
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U1 2
U2 51
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1877-1173
BN 978-0-12-398397-8
J9 PROG MOL BIOL TRANSL
JI Prog. Molec. Biol. Transl. Sci.
PY 2012
VL 108
BP 461
EP 489
DI 10.1016/B978-0-12-398397-8.00018-6
PG 29
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BBI04
UT WOS:000306934600018
PM 22656388
ER
PT S
AU Shang, F
Taylor, A
AF Shang, Fu
Taylor, Allen
BE Grune, T
TI Role of the Ubiquitin-Proteasome in Protein Quality Control and
Signaling: Implication in the Pathogenesis of Eye Diseases
SO THE PROTEASOMAL SYSTEM IN AGING AND DISEASE
SE Progress in Molecular Biology and Translational Science
LA English
DT Review; Book Chapter
ID NF-KAPPA-B; LENS EPITHELIAL-CELLS; ANAPHASE-PROMOTING COMPLEX;
ANTIOXIDANT RESPONSE ELEMENT; TRANSCRIPTION FACTOR NRF2;
AGE-RELATED-CHANGES; ALPHA-A-CRYSTALLIN; FAT-FACETS GENE; HUMAN SENILE
CATARACTOGENESIS; RETINAL-PIGMENT EPITHELIUM
AB The ubiquitin-proteasome pathway (UPP) plays important roles in many cellular functions, such as protein quality control, cell cycle control, and signal transduction. The selective degradation of aberrant proteins by the UPP is essential for the timely removal of potential cytotoxic damaged or otherwise abnormal proteins. Conversely, accumulation of the cytotoxic abnormal proteins in eye tissues is etiologically associated with many age-related eye diseases such as retina degeneration, cataract, and certain types of glaucoma. Age- or stress-induced impairment or overburdening of the UPP appears to contribute to the accumulation of abnormal proteins in eye tissues. Cell cycle and signal transduction are regulated by the conditional UPP-dependent degradation of the regulators of these processes. Impairment or overburdening of the UPP could also result in dysregulation of cell cycle control and signal transduction. The consequences of the improper cell cycle and signal transduction include defects in ocular development, wound healing, angiogenesis, or inflammatory responses. Methods that enhance or preserve UPP function or reduce its burden may be useful strategies for preventing age-related eye diseases.
C1 [Shang, Fu; Taylor, Allen] Tufts Univ, USDA, Lab Nutr & Vis Res, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Shang, F (reprint author), Tufts Univ, USDA, Lab Nutr & Vis Res, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
FU NEI NIH HHS [EY 13250, EY 011717]
NR 391
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U1 1
U2 8
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1877-1173
BN 978-0-12-397863-9
J9 PROG MOL BIOL TRANSL
JI Prog. Molec. Biol. Transl. Sci.
PY 2012
VL 109
BP 347
EP 396
DI 10.1016/B978-0-12-397863-9.00010-9
PG 50
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BBH95
UT WOS:000306933300011
PM 22727427
ER
PT J
AU Jendek, E
Chamorro, ML
AF Jendek, Eduard
Chamorro, Maria Lourdes
TI Six new species of Agrilus Curtis, 1825 (Coleoptera,
Buprestidae,Agrilinae) from the Oriental Region related to the emerald
ash borer, A. planipennis Fairmaire, 1888 and synonymy of Sarawakita
Obenberger, 1924
SO ZOOKEYS
LA English
DT Article
DE Agrilus; Buprestidae; emerald ash borer; new species; synonym; taxonomy;
nomenclature; Asia
AB Six new species of Agrilus Curtis, 1825 with affinities to the emerald ash borer, A. planipennis Fairmaire, 1888, are described from the Oriental Region: A. crepuscularis sp. n. (Malaysia); A. pseudolubopetri sp. n. (Laos); A. sapphirinus sp. n. (Laos); A. seramensis sp. n. (Indonesia); A. spineus sp. n. (Malaysia); and A. tomentipennis sp. n. (Laos). The genus Sarawakita Obenberger, 1924 syn. nov. is considered a junior synonym of Agrilus.
C1 [Chamorro, Maria Lourdes] USDA, Natl Museum Nat Hist, Systemat Entomol Lab, Washington, DC 20560 USA.
[Jendek, Eduard] Canadian Food Inspect Agcy, Ottawa Plant Lab, Ottawa, ON K1A 0C6, Canada.
RP Chamorro, ML (reprint author), USDA, Natl Museum Nat Hist, Systemat Entomol Lab, 10th & Constitut Ave NW, Washington, DC 20560 USA.
EM lourdes.chamorro@ars.usda.gov
FU Forest Service, International Programs
FX For consultation, providing specimens, and/or hosting our visits, we
thank Ales Smetana & Vasily Grebennikov (Ottawa Plant Laboratory,
Canadian Food Inspection Agency); Norman Woodley, Steve Lingafelter,
Alexander Konstantinov, Allen Norrborn, & Alma Solis (Systematic
Entomology Laboratory, Agriculture Research Service, USDA); Antoine
Mantilleri & Isabelle Bruneau de Mire (Museum national d'Histoire
naturelle, Paris); Malcolm Kerley, Sharon Shute and Max Barclay (The
Natural History Museum, London); and Vit Kuban and Jiri Hajek (National
Museum of Natural History, Prague). Finally, we thank Kevin Hackett
(National Programs Staff, ARS), Dana Roth and Darcy Nelson (Forest
Service, International Programs) for their efforts to secure funding for
this project. USDA is an equal opportunity provider and employer.
NR 18
TC 1
Z9 1
U1 1
U2 13
PU PENSOFT PUBL
PI SOFIA
PA 12 PROF GEORGI ZLATARSKI ST, SOFIA, 1700, BULGARIA
SN 1313-2989
EI 1313-2970
J9 ZOOKEYS
JI ZooKeys
PY 2012
IS 239
BP 71
EP 94
DI 10.3897/zookeys.239.3966
PG 24
WC Zoology
SC Zoology
GA 046IT
UT WOS:000311759400002
PM 23226712
ER
PT J
AU He, ZQ
Senwo, ZN
Tazisong, IA
AF He, Zhongqi
Senwo, Zachary N.
Tazisong, Irenus A.
TI Long-Term Dynamics of Labile and Stable Phosphorus Following Poultry
Litter Application to Pasture Soils
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Organic phosphorus; pasture soil; poultry litter; sequential
fractionation; soil phosphorus
ID ENZYMATIC-HYDROLYSIS; HEDLEY FRACTIONATION; ORGANIC PHOSPHORUS; SWINE
MANURE; RUNOFF LOSS; TRANSFORMATIONS; EUTROPHICATION; ACCUMULATION;
ECOSYSTEMS; PHOSPHATES
AB A major source of runoff phosphorus (P) from agricultural soils is land-applied animal manure. Our work reports P levels in pasture soils in northern Alabama affected by long-term (0-20 years) application of poultry litter (PL). Sequential fractionation revealed different buildup patterns of labile and stable P fractions in these soils. Phosphorus built up in subsurface (20-40 cm and 40-60 cm deep) soils with lower application rates than P accumulated in surface (0-20 cm deep) soils, indicating a greater potential for surface runoff than leaching from these pasture fields. Correlation analysis of the surface soils showed levels of stable P extractable by sodium hydroxide (NaOH) were related to the cumulative amount of PL applied. The level of water-extractable P increased because PL application was significantly related to the number of years the soil receiving PL, not the annual application rate or the cumulative amount of PL applied.
C1 [He, Zhongqi] USDA ARS, So Reg Res Ctr, New Orleans, LA 70124 USA.
[Senwo, Zachary N.; Tazisong, Irenus A.] Alabama A&M Univ, Dept Biol & Environm Sci, Normal, AL 35762 USA.
RP He, ZQ (reprint author), USDA ARS, So Reg Res Ctr, POB 19687, New Orleans, LA 70124 USA.
EM Zhongqi.he@ars.usda.gov
OI He, Zhongqi/0000-0003-3507-5013
NR 27
TC 5
Z9 6
U1 0
U2 13
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 22
BP 2835
EP 2850
DI 10.1080/00103624.2012.728262
PG 16
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 043IJ
UT WOS:000311535800001
ER
PT S
AU Zhao, H
Yang, ZW
Di, LP
Pei, ZY
AF Zhao, Hu
Yang, Zhengwei
Di, Liping
Pei, Zhiyuan
BE Li, DL
Chen, YY
TI Evaluation of Temporal Resolution Effect in Remote Sensing Based Crop
Phenology Detection Studies
SO COMPUTER AND COMPUTING TECHNOLOGIES IN AGRICULTURE V, PT II
SE IFIP Advances in Information and Communication Technology
LA English
DT Proceedings Paper
CT 5th International Conference on Computer and Computing Technologies in
Agriculture (CCTA)
CY OCT 29-31, 2011
CL China Agr Univ, Beijing, PEOPLES R CHINA
SP IFIP TC5 Special Interest Grp, Natl Nat Sci Fdn China (NSFC), China EU Ctr Informat & Commun Technol Agr
HO China Agr Univ
DE Crop phenology; temporal resolution evaluation; least square; double
logistic function fitting
ID NDVI TIME-SERIES; VEGETATION DYNAMICS; MODIS; SATELLITE; NOISE; INDEX
AB Remote sensing based phenology detection method has been employed to study agriculture, forestry and other vegetations for its potential to reflect the variations in climate change. These studies usually utilized time series Normalized Difference Vegetation Index (NDVI) generated from various sensors through a Maximum Value Compositing (MVC) process, which minimized the contamination from cloud and simultaneously introduce degradation of temporal accuracy. In this study, we assess the impact of temporal resolution on crop phenology derivation researches by comparing three different Moderate Resolution Imaging Spectroradiometer (MODIS) datasets: daily surface reflectance, 8 day composited surface reflectance and 16 day composited NDVI. The surface reflectance data were first filtered by employing auxiliary data which contained quality and viewing geometry information, and then used to calculate NDVI with specific date. A least square method was taken to fit the survival data points to double logistic function. And finally, seven time-related metrics were obtained and matched with field observation crop phenology stages. These remote sensing derivate phenology dates were compared to National Agricultural Statistics Service (NASS) weekly crop progress reports to evaluate the capability of these datasets in temporal sensitive studies. The results illustrated that daily surface reflectance datasets were the most accurate source for time-sensitive studies. However, extra ancillary datum and appropriate denoising techniques should be applied to reconstruct the time series curve. Phenology matching process is a necessary step before detecting phenological information from remote sensing imagery for specific land cover type since same phenological stages of different crop types might have different counterparts on time series curve.
C1 [Zhao, Hu; Pei, Zhiyuan] Chinese Acad Agr Engn, Agr Resource Monitoring Stn, 41 Maizidian St, Beijing 100125, Peoples R China.
[Zhao, Hu; Di, Liping] George Mason Univ, Ctr Spatial Informat Sci & Syst, Greenbelt, MD 20770 USA.
[Yang, Zhengwei] USDA, Natl Agr Stat Serv, Fairfax, VA 22030 USA.
RP Zhao, H (reprint author), Chinese Acad Agr Engn, Agr Resource Monitoring Stn, 41 Maizidian St, Beijing 100125, Peoples R China.
EM zhaohu@whu.edu.cn; Zhengwei_Yang@nass.usda.gov; ldi@grnu.edu;
peizhiyuan@tom.com
NR 17
TC 1
Z9 2
U1 2
U2 7
PU SPRINGER-VERLAG BERLIN
PI BERLIN
PA HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY
SN 1868-4238
BN 978-3-642-27277-6
J9 IFIP ADV INF COMM TE
PY 2012
VL 369
BP 135
EP +
PG 4
WC Agriculture, Multidisciplinary; Computer Science, Information Systems;
Computer Science, Interdisciplinary Applications
SC Agriculture; Computer Science
GA BCA66
UT WOS:000309482900016
ER
PT J
AU Brooks, JP
Adeli, A
McLaughlin, MR
Miles, DM
AF Brooks, J. P.
Adeli, A.
McLaughlin, M. R.
Miles, D. M.
TI The effect of poultry manure application rate and AlCl3 treatment on
bacterial fecal indicators in runoff
SO JOURNAL OF WATER AND HEALTH
LA English
DT Article
DE antibiotic resistance; indicators; litter; poultry; runoff; water
ID ESCHERICHIA-COLI; CLOSTRIDIUM-PERFRINGENS; UNITED-STATES; LITTER; SOIL;
PHOSPHORUS; RAINFALL; QUALITY; SITES
AB Increasing costs associated with inorganic fertilizer have led to widespread use of broiler litter. Proper land application, typically limiting nutrient loss, is essential to protect surface water. This study was designed to evaluate litter-borne microbial runoff (heterotrophic plate count bacteria, staphylococci, Escherichia coli, enterococci, and Clostridium perfringens) while applying typical nutrient-control methods. Field studies were conducted in which plots with high and low litter rates, inorganic fertilizer, AlCl3-treated litter, and controls were rained on five times using a rain generator. Overall, microbial runoff from poultry litter applied plots was consistently greater (2-5 log(10) plot(-1)) than controls. No appreciable effect on microbial runoff was noted from variable litter application rate or AlCl3 treatments, though rain event, not time, significantly affected runoff load. C. perfringens and staphylococci runoff were consistently associated with poultry litter application, during early rain events, while other indicators were unreliable. Large microbial runoff pulses were observed, ranging from 10(2) to 10(10) CFU plot(-1); however, only a small fraction of litter-borne microbes were recoverable in runoff. This study indicated that microbial runoff from litter-applied plots can be substantial, and that methods intended to reduce nutrient losses do not necessarily reduce microbial runoff.
C1 [Brooks, J. P.; Adeli, A.; McLaughlin, M. R.; Miles, D. M.] ARS, USDA, Genet & Precis Agr Unit, Mississippi State, MS 39762 USA.
RP Brooks, JP (reprint author), ARS, USDA, Genet & Precis Agr Unit, 801 HWY 12 E, Mississippi State, MS 39762 USA.
EM john.brooks@ars.usda.gov
NR 32
TC 2
Z9 2
U1 0
U2 7
PU IWA PUBLISHING
PI LONDON
PA ALLIANCE HOUSE, 12 CAXTON ST, LONDON SW1H0QS, ENGLAND
SN 1477-8920
J9 J WATER HEALTH
JI J. Water Health
PY 2012
VL 10
IS 4
BP 619
EP 628
DI 10.2166/wh.2012.033
PG 10
WC Environmental Sciences; Public, Environmental & Occupational Health;
Microbiology; Water Resources
SC Environmental Sciences & Ecology; Public, Environmental & Occupational
Health; Microbiology; Water Resources
GA 040RT
UT WOS:000311341300013
PM 23165718
ER
PT J
AU Jones, GD
Allen, KC
AF Jones, G. D.
Allen, K. C.
TI Using Amaranthus palmeri pollen to mark captured tarnished plant bugs
SO PALYNOLOGY
LA English
DT Article
DE pollen; entomopalynology; tarnished plant bugs; pollen retention
ID BOLL-WEEVILS COLEOPTERA; HOST PLANTS; NORTHEASTERN MEXICO;
LYGUS-LINEOLARIS; FORAGING RESOURCES; CENTRAL TEXAS; CORN-EARWORM;
CURCULIONIDAE; LEPIDOPTERA; NOCTUIDAE
AB Wild host plants play an important role for tarnished plant bug (TPB) Lygus lineolaris, populations when cultivated crops are not flowering. Determining dispersal into/out of cropping systems and native habitats is important for managing this insect pest. Mark and capture techniques, 'novel proteins' or dyes to determine insect dispersal are time consuming, costly and can cause problems to insects and people. Pollen analysis of insects is easy and marking them with pollen does not injure insects or people. Although pollen has been used to determine dispersal and food sources of many insects, it has not been used for TPB. As a preliminary study, we wanted to test if pollen could be used as a marker and to determine TPB dispersal and food. Adult TPB were allowed to feed on Amaranthus palmeri flowers for 72 hours, then sacrificed at 0, 1, 3, 6, 12, 24 and 96 hours. Rinsing the insects three times with 95% ethyl alcohol prior to acetolysis removed 99% of the external pollen. There was a significant reduction in the number of pollen grains found in acetolyzed adults from the 0 to 96 hour time interval. At 0, 1 and 3 hours, 100% of the TPB contained pollen and at 96 hours, 55% contained pollen. Overall, 89% of the TPB examined contained pollen. Insects examined at 0 hours contained the greatest number of pollen grains (757) and those at 96 hours contained the least (26). If a TPB contained more than 10 A. palmeri pollen grains, there is a high probability that this individual fed within 12 hours. Amaranthus palmeri pollen worked well as a natural marker. Determining the pollen retention of various wild hosts in the gut helps in the management of this insect pest because it gives entomologists a time frame and a way to 'track' these insect pests.
C1 [Jones, G. D.] ARS, USDA, Areawide Pest Management Res Unit, College Stn, TX 77845 USA.
[Allen, K. C.] ARS, USDA, So Insect Management Res Unit, Stoneville, MS 38776 USA.
RP Jones, GD (reprint author), ARS, USDA, Areawide Pest Management Res Unit, College Stn, TX 77845 USA.
EM g-jones@tamu.edu
NR 57
TC 2
Z9 2
U1 1
U2 8
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0191-6122
J9 PALYNOLOGY
JI Palynology
PY 2012
VL 36
IS 2
BP 153
EP 161
DI 10.1080/01916122.2012.662178
PG 9
WC Plant Sciences; Paleontology
SC Plant Sciences; Paleontology
GA 039HQ
UT WOS:000311235900001
ER
PT S
AU Lewis, CE
Fry, AM
Hermann, JR
Siev, D
Dusek, DM
Gatewood, DM
AF Lewis, C. E.
Fry, A. M.
Hermann, J. R.
Siev, D.
Dusek, D. M.
Gatewood, D. M.
BE Jungback, C
TI Potency Testing of Veterinary Rabies Vaccines: Replacement of Challenge
by in Vitro Testing Considerations for Development of Alternative Assays
SO POTENCY TESTING OF VETERINARY VACCINES FOR ANIMALS: THE WAY FROM IN VIVO
TO IN VITRO
SE Developments in Biologicals
LA English
DT Proceedings Paper
CT International Scientific Workshop on Potency Testing of Veterinary
Vaccines - Way from in Vivo to in Vitro
CY DEC 01-03, 2010
CL Paul Ehrlich Inst, Langen, GERMANY
SP Paul Ehrlich Inst, European Directorate Qual Med & Healthcare, Int Alliance Biol Standardizat
HO Paul Ehrlich Inst
DE rabies vaccine; potency testing; vaccine challenge
ID REDUCTION; MICE; EFFICACY; NUMBER; ROUTE
AB Vaccination of domestic animals against rabies creates a critical barrier between wildlife reservoirs and the human population. Ensuring these vaccines are potent and effective is paramount in preventing human exposure to this deadly and costly disease. The National Institutes of Health (NIH) test is, at present, the most widely used and internationally recommended potency assay for batch testing inactivated rabies vaccines. This test has numerous inherent limitations and disadvantages, including a lack of precision. The NIH test requires a large number of animals and involves unrelieved pain and suffering. A relevant in vitro assay should provide a more accurate, reproducible, rapid, safe, and humane rabies vaccine potency test.
C1 [Lewis, C. E.; Fry, A. M.; Hermann, J. R.; Siev, D.; Dusek, D. M.; Gatewood, D. M.] USDA, APHIS, VS, CVB, Ames, IA 50010 USA.
RP Gatewood, DM (reprint author), USDA, APHIS, VS, CVB, 1920 Dayton Ave, Ames, IA 50010 USA.
EM donna.m.gatewood@aphis.usda.gov
NR 14
TC 1
Z9 1
U1 0
U2 0
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1424-6074
BN 978-3-8055-9892-7
J9 DEV BIOLOGICALS
JI Dev. Biols
PY 2012
VL 134
BP 29
EP 33
PG 5
WC Pharmacology & Pharmacy; Veterinary Sciences
SC Pharmacology & Pharmacy; Veterinary Sciences
GA BCP26
UT WOS:000310938700004
PM 22888592
ER
PT S
AU Kupa-Eddy, J
AF Kupa-Eddy, J.
BE Jungback, C
TI Successful Development and Validation of an in Vitro Replacement Assay
for Leptospira Vaccine Potency Tests
SO POTENCY TESTING OF VETERINARY VACCINES FOR ANIMALS: THE WAY FROM IN VIVO
TO IN VITRO
SE Developments in Biologicals
LA English
DT Proceedings Paper
CT International Scientific Workshop on Potency Testing of Veterinary
Vaccines - Way from in Vivo to in Vitro
CY DEC 01-03, 2010
CL Paul Ehrlich Inst, Langen, GERMANY
SP Paul Ehrlich Inst, European Directorate Qual Med & Healthcare, Int Alliance Biol Standardizat
HO Paul Ehrlich Inst
DE leptospira vaccine; potency; replacement alternative
AB The standard requirement for serial release potency testing of Leptospira bacterins in the United States is the hamster vaccination challenge test. It is a test that uses a large number of animals experiencing pain or distress, takes weeks to conduct, can be expensive and requires that laboratory personnel handle a viable zoonotic pathogen. In an effort to address these concerns, the United States Department of Agriculture (USDA) developed an in vitro method for potency testing of four Leptospira serovars. This enzyme-linked immunosorbent assay (ELISA) was subsequently validated in the target species. USDA informed their biologics licensees, permittees and applicants of the availability of reference bacterins and the regulatory acceptance regarding this alternative test method in notices issued in 2007 and 2009. This presentation describes how the initial research and subsequent development and validation work were accomplished.
C1 Anim & Plant Hlth Inspect Serv, USDA, Vet Serv, Riverdale, MD 20737 USA.
RP Kupa-Eddy, J (reprint author), Anim & Plant Hlth Inspect Serv, USDA, Vet Serv, 4700 River Rd,Unit 2, Riverdale, MD 20737 USA.
EM jodie.a.kulpa-eddy@aphis.usda.gov
NR 4
TC 0
Z9 0
U1 0
U2 0
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1424-6074
BN 978-3-8055-9892-7
J9 DEV BIOLOGICALS
JI Dev. Biols
PY 2012
VL 134
BP 101
EP 106
PG 6
WC Pharmacology & Pharmacy; Veterinary Sciences
SC Pharmacology & Pharmacy; Veterinary Sciences
GA BCP26
UT WOS:000310938700013
ER
PT S
AU Huang, L
Hwang, CA
AF Huang, L.
Hwang, C-A.
BE Kerry, JP
TI In-package pasteurization of ready-to-eat meat and poultry products
SO ADVANCES IN MEAT, POULTRY AND SEAFOOD PACKAGING
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Article; Book Chapter
DE ready-to-eat; in-package; pasteurization; pathogens; food safety
ID LISTERIA-MONOCYTOGENES; HOT-WATER; THERMAL INACTIVATION; TURKEY BOLOGNA;
LETHALITY; STRIPS; STEAM
AB In-package thermal pasteurization is a widely used processing method to eliminate foodborne pathogens in packaged ready-to-eat foods. The chapter first gives an overview of the microbial concerns that are associated with ready-to-eat foods. It then describes factors such as product configuration in package and processing time-temperature combinations that affect the effectiveness of in-package pasteurization. The chapter concludes with a review of published studies to further the technology of in-package pasteurization.
C1 [Huang, L.; Hwang, C-A.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Huang, L (reprint author), ARS, Eastern Reg Res Ctr, USDA, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM Lihan.Huang@ars.usda.gov; Andy.Hwang@ars.usda.gov
NR 20
TC 0
Z9 0
U1 2
U2 2
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-571-8
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 220
BP 437
EP 450
D2 10.1533/9780857095718
PG 14
WC Food Science & Technology
SC Food Science & Technology
GA BCH70
UT WOS:000310215000017
ER
PT S
AU Colegate, SM
Stegelmeier, BL
Edgar, JA
AF Colegate, S. M.
Stegelmeier, B. L.
Edgar, J. A.
BE FinkGremmels, J
TI Dietary exposure of livestock and humans to hepatotoxic natural products
SO ANIMAL FEED CONTAMINATION: EFFECTS ON LIVESTOCK AND FOOD SAFETY
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Article; Book Chapter
DE natural hepatotoxins; livestock poisoning; human poisoning;
pyrrolizidine alkaloids
ID PYRROLIZIDINE ALKALOID RIDDELLIINE; SOLID-PHASE EXTRACTION; LC-MS
ANALYSIS; N-OXIDES; TOXIC PEPTIDES; LIVER-DISEASE; FACIAL ECZEMA; SAWFLY
LARVAE; METABOLITES; INTOXICATION
AB Hepatotoxicity is a multi-factorial and multi-consequential assault on the liver by various toxins including many natural toxins that may be present in animal feed and human food. Some examples of hepatotoxins are given but the main emphasis is focused on the hepatotoxic dehydropyrrolizidine alkaloids. The chemical diversity of the dehydropyrrolizidine alkaloids and their complex mechanism of action following acute or chronic exposure provide challenges for analysis and toxicological evaluation.
C1 [Colegate, S. M.; Stegelmeier, B. L.] ARS, Poisonous Plant Res Lab, USDA, Logan, UT 84341 USA.
[Edgar, J. A.] CSIRO, Samaria, Vic 3673, Australia.
RP Colegate, SM (reprint author), ARS, Poisonous Plant Res Lab, USDA, 1150 East,1400 North, Logan, UT 84341 USA.
EM steven.colegate@ars.usda.gov; bryan.stegelmeier@ars.usda.gov;
john.edgar@csiro.au
NR 97
TC 0
Z9 0
U1 1
U2 4
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-361-5
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 215
BP 352
EP 382
D2 10.1533/9780857093615
PG 31
WC Agriculture, Dairy & Animal Science; Food Science & Technology
SC Agriculture; Food Science & Technology
GA BCH69
UT WOS:000310214700015
ER
PT J
AU Berrada, AF
Halvorson, AD
AF Berrada, Abdel F.
Halvorson, Ardell D.
TI Manure and nitrogen fertilizer effects on corn productivity and soil
fertility under drip and furrow irrigation
SO ARCHIVES OF AGRONOMY AND SOIL SCIENCE
LA English
DT Article
DE corn; nitrogen; water; soil salinity; phosphorus
ID CLAY LOAM SOIL; COMPOST APPLICATIONS; PHOSPHORUS; SALINITY; NITRATE;
FIELD
AB A field experiment was conducted at the Arkansas Valley Research Center in 2005 through 2007 to study the effects of manure and nitrogen fertilizer on corn yield, nutrient uptake, N and P soil tests, and soil salinity under furrow and drip irrigation. Manure or inorganic N was applied in 2005 and 2006 only. There were no significant differences in corn yield between drip and furrow irrigation even though, on average, 42% less water was applied with drip irrigation. Inorganic N or manure application generally increased grain yield, kernel weight, grain and stover N uptake, and grain P uptake. Nitrogen rates above 67 kg ha(-1) did not increase grain yield significantly in 2005 or 2006, nor did manure rates in excess of 22 Mg ha(-1). High manure rates increased soil salinity early in the season, depressing corn yields in 2005 and 2006, particularly with drip irrigation. Salts tended to accumulate in the lower half of the root zone under drip irrigation. Residual nitrate nitrogen from manure and inorganic N application sustained corn yields above 12.0 Mg ha(-1) in 2007. More research is needed to develop best manure and drip irrigation management for corn production in the Arkansas Valley.
C1 [Berrada, Abdel F.] Colorado State Univ, SW Colorado Res Ctr, Yellow Jacket, CO USA.
[Halvorson, Ardell D.] ARS, USDA, Ft Collins, CO USA.
RP Berrada, AF (reprint author), Colorado State Univ, SW Colorado Res Ctr, Yellow Jacket, CO USA.
EM abdel.berrada@colostate.edu
FU Colorado Department of Public Health and Environment (CDPHE); USDA-NRCS;
USDA-ARS; Colorado State University Agricultural Experiment Station
FX This study was funded by the Colorado Department of Public Health and
Environment (CDPHE), USDA-NRCS, USDA-ARS, and Colorado State University
Agricultural Experiment Station. The authors would like to thank James
Valliant for his leadership in applying for and obtaining the CDPHE
grant and Michael Bartolo for his valuable support in setting up the
drip irrigation system. The authors thank K. Tanabe, C. Reule, P.
Norris, Amin Berrada and B. Floyd for their assistance in sample
collection and analytical support in processing and analyzing the soil
and plant samples. Trade names and company names are included for the
benefit of the reader and do not imply any endorsement or preferential
treatment of the product by the authors, Colorado State University or
USDA-ARS.
NR 29
TC 1
Z9 1
U1 2
U2 19
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0365-0340
J9 ARCH AGRON SOIL SCI
JI Arch. Agron. Soil Sci.
PY 2012
VL 58
IS 12
BP 1329
EP 1347
DI 10.1080/03650340.2011.590135
PG 19
WC Agronomy; Soil Science
SC Agriculture
GA 034DY
UT WOS:000310851500001
ER
PT J
AU Shen, Y
Mitchell, MS
Donovan, DM
Nelson, DC
AF Shen, Yang
Mitchell, Michael S.
Donovan, David M.
Nelson, Daniel C.
BE Hyman, P
Abedon, ST
TI Phage-based Enzybiotics
SO BACTERIOPHAGES IN HEALTH AND DISEASE
SE Advances in Molecular and Cellular Microbiology
LA English
DT Article; Book Chapter
ID RESISTANT STAPHYLOCOCCUS-AUREUS; TAIL-LIKE BACTERIOCIN; PNEUMOCOCCAL
CELL-WALL; LYTIC ENZYME CPL-1; BACILLUS-AMYLOLIQUEFACIENS PHAGE;
INFECTED PSEUDOMONAS AERUGINOSA; AORTIC-VALVE ENDOCARDITIS; GROUP-B
STREPTOCOCCI; POLYSACCHARIDE DEPOLYMERASE; ESCHERICHIA-COLI
C1 [Shen, Yang; Mitchell, Michael S.; Nelson, Daniel C.] Univ Maryland, Inst Biosci & Biotechnol Res, Rockville, MD 20850 USA.
[Nelson, Daniel C.] Univ Maryland, Dept Vet Med, College Pk, MD 20742 USA.
[Nelson, Daniel C.] Univ Maryland, Virginia Maryland Reg Coll Vet Med, College Pk, MD 20742 USA.
[Donovan, David M.] ARS, Anim Biosci & Biotechnol Lab, ANRI, USDA, Beltsville, MD 20705 USA.
RP Shen, Y (reprint author), Univ Maryland, Inst Biosci & Biotechnol Res, Rockville, MD 20850 USA.
EM nelsond@umd.edu
NR 162
TC 11
Z9 11
U1 0
U2 11
PU CABI PUBLISHING-C A B INT
PI WALLINGFORD
PA CABI PUBLISHING, WALLINGFORD 0X10 8DE, OXON, ENGLAND
BN 978-1-84593-984-7
J9 ADV M C M
PY 2012
IS 24
BP 217
EP 239
D2 10.1079/9781845939847.0000
PG 23
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Microbiology
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Microbiology
GA BCU60
UT WOS:000311504700017
ER
PT S
AU Qin, J
AF Qin, J.
BE Sun, DW
TI Hyperspectral and multispectral imaging in the food and beverage
industries
SO COMPUTER VISION TECHNOLOGY IN THE FOOD AND BEVERAGE INDUSTRIES
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Editorial Material; Book Chapter
DE hyperspectral; multispectral; machine vision; food quality and safety;
nondestructive evaluation
ID SUPPORT VECTOR MACHINE; FECAL CONTAMINATION; FRUIT FIRMNESS; PART I;
SYSTEM; QUALITY; FLUORESCENCE; REFLECTANCE; INSPECTION; APPLES
AB This chapter presents hyperspectral and multispectral imaging technologies in the food and agricultural area. It puts emphasis on the introduction and demonstration of spectral imaging techniques for practical uses. The main topics include spectral image acquisition methods, essential components for building spectral imaging systems (e.g., light sources, wavelength dispersive devices and area detectors), methods for calibrating spectral imaging systems (e.g., spectral and spatial calibrations) and techniques for analyzing spectral images (e.g., data preprocessing, dimension reduction and band selection). The spectral imaging applications for evaluating food and beverage products are also presented.
C1 ARS, Environm Microbial & Food Safety Lab, Henry Wallace Beltsville Agr Res Ctr, USDA, Beltsville, MD 20705 USA.
RP Qin, J (reprint author), ARS, Environm Microbial & Food Safety Lab, Henry Wallace Beltsville Agr Res Ctr, USDA, Bldg 303 BARC E,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM jianwei.qin@ars.usda.gov
NR 74
TC 1
Z9 1
U1 0
U2 1
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-577-0
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 238
BP 27
EP 63
D2 10.1533/9780857095770
PG 37
WC Food Science & Technology
SC Food Science & Technology
GA BCV02
UT WOS:000311553300002
ER
PT S
AU Toyofuku, N
Haff, RP
AF Toyofuku, N.
Haff, R. P.
BE Sun, DW
TI Computer vision for foreign body detection and removal in the food
industry
SO COMPUTER VISION TECHNOLOGY IN THE FOOD AND BEVERAGE INDUSTRIES
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Article; Book Chapter
DE computer vision; foreign body detection; optical inspection; X-ray
inspection; contaminant removal
ID X-RAY IMAGES; NEURAL-NET CLASSIFICATION; PISTACHIO NUT DATA; DEFECT
DETECTION; MACHINE VISION; WHEAT RADIOGRAPHS; INSPECTION; KERNELS;
QUALITY; WEEVIL
AB A broad range of solutions have been devised to remove foreign body contaminants, prompted by the many injuries and lawsuits that they cause each year. This chapter details the use of computer vision inspection systems to detect the wide variety of these contaminants and remove them from the product stream. Two major approaches are discussed: optical inspection systems, which use images generated using visible or near infrared wavelengths to inspect the exterior of the product, and X-ray inspection systems, which use X-ray imaging to non-destructively search the interior of packages and products.
C1 [Toyofuku, N.; Haff, R. P.] ARS, Plant Mycotoxin Res Unit, USDA, WRRC, Albany, CA 94710 USA.
RP Toyofuku, N (reprint author), ARS, Plant Mycotoxin Res Unit, USDA, WRRC, 800 Buchanan St, Albany, CA 94710 USA.
EM Natsuko.Toyofuku@ars.usda.gov; ron.haff@ars.usda.gov
NR 96
TC 1
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U1 0
U2 2
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-577-0
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 238
BP 181
EP 205
D2 10.1533/9780857095770
PG 25
WC Food Science & Technology
SC Food Science & Technology
GA BCV02
UT WOS:000311553300007
ER
PT S
AU Chao, K
Park, B
Kim, MS
AF Chao, K.
Park, B.
Kim, M. S.
BE Sun, DW
TI Computer vision in the poultry industry
SO COMPUTER VISION TECHNOLOGY IN THE FOOD AND BEVERAGE INDUSTRIES
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Article; Book Chapter
DE food safety inspection; chicken processing; hyperspectral imaging;
multispectral imaging
ID MULTISPECTRAL IMAGING-SYSTEM; DUAL-CAMERA SYSTEM; INFRARED REFLECTANCE;
CARCASS INSPECTION; INGESTA
AB Computer vision is becoming increasingly important in the poultry industry due to increasing use and speed of automation in processing operations. Research to develop the technology has included multiple approaches including spectroscopy and spectral imaging. Case studies are presented that focus on recent research targeting line-scan imaging for two food safety applications: automated wholesomeness inspection and fecal contamination detection for chicken carcasses.
C1 [Chao, K.; Kim, M. S.] ARS, USDA, Henry A Wallace Beltsville Agr Res Ctr, Environm Microbial & Food Safety Lab, Beltsville, MD 20705 USA.
[Park, B.] ARS, USDA, Richard B Russell Res Ctr, Athens, GA 30602 USA.
RP Chao, K (reprint author), ARS, USDA, Henry A Wallace Beltsville Agr Res Ctr, Environm Microbial & Food Safety Lab, 10300 Baltimore Ave,Bldg 303 BARC E, Beltsville, MD 20705 USA.
EM kevin.chao@ars.usda.gov
NR 14
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U1 0
U2 1
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-577-0
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 238
BP 330
EP 351
D2 10.1533/9780857095770
PG 22
WC Food Science & Technology
SC Food Science & Technology
GA BCV02
UT WOS:000311553300012
ER
PT J
AU DeGrandi-Hoffman, G
Sammataro, D
Simonds, R
AF DeGrandi-Hoffman, Gloria
Sammataro, Diana
Simonds, Roger
TI Are agrochemicals present in High Fructose Corn Syrup fed to honey bees
(Apis mellifera L.)?
SO JOURNAL OF APICULTURAL RESEARCH
LA English
DT Article
DE neonicotinoids; imidacloprid; colony losses; CCD
C1 [DeGrandi-Hoffman, Gloria; Sammataro, Diana] ARS, Carl Hayden Bee Res Ctr, USDA, Tucson, AZ 85719 USA.
[Simonds, Roger] AMS, Natl Sci Lab, USDA, Gastonia, NC 28054 USA.
RP DeGrandi-Hoffman, G (reprint author), ARS, Carl Hayden Bee Res Ctr, USDA, 2000 E Allen Rd, Tucson, AZ 85719 USA.
EM gloria.hoffman@ars.usda.gov
NR 6
TC 2
Z9 2
U1 4
U2 27
PU INT BEE RESEARCH ASSOC
PI CARDIFF
PA 16 NORTH RD, CARDIFF CF10 3DY, WALES
SN 0021-8839
J9 J APICULT RES
JI J. Apic. Res.
PY 2012
VL 51
IS 4
BP 371
EP 372
DI 10.3896/IBRA.1.51.4.16
PG 2
WC Entomology
SC Entomology
GA 017HF
UT WOS:000309580100016
ER
PT J
AU Smith, DR
Janzen, DH
Hallwachs, W
Smith, MA
AF Smith, David R.
Janzen, Daniel H.
Hallwachs, Winnie
Smith, M. Alexander
TI Hyperparasitoid wasps (Hymenoptera, Trigonalidae) reared from dry forest
and rain forest caterpillars of Area de Conservacion Guanacaste, Costa
Rica
SO JOURNAL OF HYMENOPTERA RESEARCH
LA English
DT Article
DE Central America; hyperparasitoid host specificity; Lepidoptera; Diptera;
DNA barcoding; tropical trophic web
ID PARASITOID FLIES DIPTERA; TRIGONALYIDAE HYMENOPTERA; HOST; DNA; BIOLOGY;
INTEGRATION; TACHINIDAE; HISTORY
AB Five species of Trigonalidae, hyperparasitoids of Ichneumonidae (Hymenoptera) and Tachinidae (Diptera) that parasitize caterpillars (Lepidoptera), have been reared during the ongoing caterpillar inventory of Area de Conservacion Guanacaste (ACG), Guanacaste Province, northwestern Costa Rica: Lycogaster apicipennis (Cameron), Taeniogonalos woodorum Smith, sp. n., Taeniogonalos fasciatipennis (Cameron), Trigonalys championi Cameron, and Trigonalys maculifrons Sharp. Morphological and DNA barcoding data support species separation of these generalist hyperparasitoids. Taeniogonalos gundlachii (Cresson) is not a widespread, color-variable species as previously treated and is probably confined to eastern North America. The species previously considered as T gundlachii in Costa Rica is regarded as Taeniogonalos fasciatipennis, a species found only in ACG dry forest. Taeniogonalos woodorum is a similar species but found only in the ACG rain forest. Habitat and host records are given for these five species of trigonalids.
C1 [Smith, David R.] Agr Res Serv, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, Washington, DC 20013 USA.
[Janzen, Daniel H.; Hallwachs, Winnie] Univ Penn, Dept Biol, Philadelphia, PA 19104 USA.
[Smith, M. Alexander] Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada.
[Smith, M. Alexander] Univ Guelph, Biodivers Inst Ontario, Guelph, ON N1G 2W1, Canada.
RP Smith, DR (reprint author), Agr Res Serv, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, POB 37012,MRC 168, Washington, DC 20013 USA.
EM sawfly2@aol.com
RI Smith, M Alex/B-4468-2013
OI Smith, M Alex/0000-0002-8650-2575
FU NSF [DEB 0515699]; Natural Sciences and Engineering Research Council of
Canada (NSERC); Government of Canada through Genome Canada; Ontario
Genomics Institute [2008-0GI-ICI-03]
FX We emphatically and gratefully acknowledge the support of the ACG
parataxonomist team in finding and rearing these caterpillars, their
parasitoids, and their hyperparasitoids, and Area de Conservacion
Guanacaste for preserving the forests in which they live, and the
Guanacaste Dry Forest Conservation Fund, the Wege Foundation, and the
University of Pennsylvania for funding portions of the research. This
study was also supported by NSF DEB 0515699 to DHJ and by a Natural
Sciences and Engineering Research Council of Canada (NSERC) Discovery
Grant to MAS. Laboratory analyses on sequences generated since 2009 were
funded by the Government of Canada through Genome Canada and the Ontario
Genomics Institute (2008-0GI-ICI-03). We thank D. G. Notton, The Natural
History Museum, London; J. Huber and H. Goulet, Canadian National Insect
Collection, Ottawa, J. Wiley, Florida State Collection of Arthropods,
Gainesville, FL, and N. M Schiff, U. S. Forest Service, Stoneville, MS,
for loan of specimens. Michele Touchet, Systematic Entomology
Laboratory, USDA, Washington, DC, helped with the images. We appreciate
reviews of the manuscript by the following: P. Tripotin, Mont
Saint-Aignan, France, and M. L. Chamorro, Systematic Entomology
Laboratory, USDA, Washington, DC. USDA is an equal opportunity provider
and employer.
NR 34
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U1 0
U2 11
PU PENSOFT PUBL
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1070-9428
J9 J HYMENOPT RES
JI J. Hymenopt. Res.
PY 2012
VL 29
BP 119
EP 144
DI 10.3897/JHR.29.3233
PG 26
WC Entomology
SC Entomology
GA 036WX
UT WOS:000311064100008
ER
PT J
AU Qi, YW
Pan, YB
Lao, FY
Zhang, CM
Fan, LN
He, HY
Liu, R
Wang, QN
Liu, SM
Liu, FY
Li, QW
Deng, HH
AF Qi Yong-wen
Pan Yong-bao
Lao Fang-ye
Zhang Chui-ming
Fan Li-na
He Hui-yi
Liu Rui
Wang Qin-nan
Liu Shao-mou
Liu Fu-ye
Li Qi-wei
Deng Hai-hua
TI Genetic Structure and Diversity of Parental Cultivars Involved in China
Mainland Sugarcane Breeding Programs as Inferred from DNA
Microsatellites
SO JOURNAL OF INTEGRATIVE AGRICULTURE
LA English
DT Article
DE genetic diversity; microsatellite DNA marker; population structure;
sugarcane
ID MULTILOCUS GENOTYPE DATA; POPULATION-STRUCTURE; ERIANTHUS-ARUNDINACEUS;
MOLECULAR MARKERS; SACCHARUM; INFERENCE; CANE
AB To understand genetic structure and diversity of parental cultivars involved in China Mainland sugarcane breeding programs, 92 elite parents and 4 wild relatives were genotyped with 18 microsatellite DNA markers. The genetic similarity (GS) values among the cultivars ranged from 0.346 to 0.960 with an average of 0.533. Among the introduced cultivars, India accessions had the closest genetic distance to China Mainland accessions (0.447), while Australia accessions have the furthest distance (0.503). A comparison of allelic diversity among geographical origins showed that there were 22 China Mainland specific alleles, of which 28% were derived from native S. spontaneaum germplasm in China. Model-based genetic structure, clustering, and principal components analyses consistently revealed there were five groups within the 96 accessions. Groups 1, 2, 4, and 5 consisted of all cultivars and group 3 only contained wild germplasm. Group 2 was characterized as the Introduction group with 46 cultivars predominantly introduced from Australia, Taiwan of China, India, and USA. Groups 1, 4, and 5 consisted of cultivars mostly originated from China Mainland, defined as the Complex group, Yacheng lines group, and F134/CP72-1210 group, respectively, upon their pedigree. By understanding the genetic relationships among the parental cultivars, breeders can gain a rational basis for expanding the gene pool and select the best parental accessions for crossing.
C1 [Qi Yong-wen; Lao Fang-ye; Zhang Chui-ming; Fan Li-na; He Hui-yi; Liu Rui; Wang Qin-nan; Liu Shao-mou; Liu Fu-ye; Li Qi-wei; Deng Hai-hua] Guangzhou Sugarcane Ind Res Inst, Guangdong Key Lab Sugarcane Improvement & Biorefi, Guangzhou 510316, Guangdong, Peoples R China.
[Pan Yong-bao] USDA ARS, Mid S Area, Sugarcane Res Lab, Houma, LA 70360 USA.
RP Deng, HH (reprint author), Guangzhou Sugarcane Ind Res Inst, Guangdong Key Lab Sugarcane Improvement & Biorefi, Guangzhou 510316, Guangdong, Peoples R China.
EM yongwen2001@163.com; haihuadeng@126.com
FU National Natural Science Foundation of China [30800700]; China
Agriculture Research System
FX This work was supported by the National Natural Science Foundation of
China (30800700), and the China Agriculture Research System.
NR 40
TC 2
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U1 2
U2 9
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 2095-3119
J9 J INTEGR AGR
JI J. Integr. Agric.
PY 2012
VL 11
IS 11
BP 1794
EP 1803
PG 10
WC Agriculture, Multidisciplinary
SC Agriculture
GA 035HI
UT WOS:000310933600005
ER
PT J
AU Wagner, E
Dumbauld, BR
Hacker, SD
Trimble, AC
Wisehart, LM
Ruesink, JL
AF Wagner, Eric
Dumbauld, Brett R.
Hacker, Sally D.
Trimble, Alan C.
Wisehart, Lorena M.
Ruesink, Jennifer L.
TI Density-dependent effects of an introduced oyster, Crassostrea gigas, on
a native intertidal seagrass, Zostera marina
SO MARINE ECOLOGY PROGRESS SERIES
LA English
DT Article
DE Zostera marina; Crassostrea gigas; Density-dependent effects; Shellfish
aquaculture; Disturbance; Recovery
ID SUSPENSION-FEEDING BIVALVES; WILLAPA BAY; NONNATIVE OYSTERS;
AQUACULTURE; PRODUCTIVITY; ESTUARIES; RESTORATION; WASHINGTON;
MANAGEMENT; GROWTH
AB Seagrasses and bivalves co-occur worldwide, and each plays a role in the structure, function, and services of coastal ecosystems. While seagrasses are declining, bivalve aquaculture is expanding, and impacts from culture practices, as opposed to the cultured organisms themselves, need to be distinguished. In 2 experiments, we tested the effects of live Crassostrea gigas, an introduced oyster, on Zostera marina, a native seagrass, in Willapa Bay, Washington. Expt 1 involved adult oyster addition across a large range in density (0 to 70% cover), and also considered the effects of the physical components of an oyster: its shell, and fertilizer mimicking biodeposition. Expt 2 simulated a crop cycle with addition of newly-settled oysters at relevant commercial density (<= 20%), which then grew over 3 yr. In Expt 1, seagrass shoot density and size declined (at least 50% and at most 40%, respectively) with oyster addition. Steep declines indicating density-dependent space competition occurred at different thresholds after 1 (1.3% oyster cover), 2 (12.4%), and 3 yr (21.9%). Live oysters changed sediment characteristics, increasing organic content, silt: sand ratios, and levels of porewater ammonium, but these changes did not affect eelgrass. Nutrient addition did not affect density or growth, although it augmented porewater ammonium. In Expt 2, no significant reductions in density, size, or growth of seagrass occurred. Our results suggest that the effects of introduced oysters on seagrass occur through space competition and can exceed the footprint of the oysters, generating strong impacts above a threshold of similar to 20% cover.
C1 [Wagner, Eric; Trimble, Alan C.; Ruesink, Jennifer L.] Univ Washington, Dept Biol, Seattle, WA 98195 USA.
[Dumbauld, Brett R.] Agr Res Serv, USDA, Newport, OR 97365 USA.
[Hacker, Sally D.; Wisehart, Lorena M.] Oregon State Univ, Dept Zool, Corvallis, OR 97331 USA.
RP Wagner, E (reprint author), Univ Washington, Dept Biol, Seattle, WA 98195 USA.
EM elwagner@uw.edu
FU Western Regional Aquaculture Center, United States Department of
Agriculture, Cooperative State Research, Education, and Extension
Service [2003-38500-13198]; Andrew W. Mellon Foundation
FX This study was supported by the Western Regional Aquaculture Center
through Grant No. 2003-38500-13198 from the United States Department of
Agriculture, Cooperative State Research, Education, and Extension
Service. J.L.R. and A.C.T. were funded by the Andrew W. Mellon
Foundation. Washington Department of Fish and Wildlife provided field
and laboratory space. Thanks to L. McCoy, B. Kauffman, and R.
Hildenbrand for assistance in the field. E. Buhle receives our
particular thanks for assistance in the field, helpful discussions, and
comments on the manuscript.
NR 39
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Z9 15
U1 9
U2 55
PU INTER-RESEARCH
PI OLDENDORF LUHE
PA NORDBUNTE 23, D-21385 OLDENDORF LUHE, GERMANY
SN 0171-8630
J9 MAR ECOL PROG SER
JI Mar. Ecol.-Prog. Ser.
PY 2012
VL 468
BP 149
EP 160
DI 10.3354/meps09952
PG 12
WC Ecology; Marine & Freshwater Biology; Oceanography
SC Environmental Sciences & Ecology; Marine & Freshwater Biology;
Oceanography
GA 036PV
UT WOS:000311041900012
ER
PT J
AU Li, GL
Liu, Y
Zhu, Y
Li, QM
Dumroese, RK
AF Li, Guolei
Liu, Yong
Zhu, Yan
Li, Qingmei
Dumroese, R. Kasten
TI Effect of Fall-applied Nitrogen on Growth, Nitrogen Storage, and Frost
Hardiness of Bareroot Larix olgensis Seedlings
SO SILVA FENNICA
LA English
DT Article
DE deciduous trees; fall fertilization; frost hardiness; Olga Bay larch
ID LATE-SEASON FERTILIZATION; PICEA-MARIANA SEEDLINGS;
PSEUDOTSUGA-MENZIESII; AUTUMN FERTILIZATION; NUTRIENT DYNAMICS;
PINE-SEEDLINGS; NURSERY; RETRANSLOCATION; TOLERANCE; PHENOLOGY
AB Nursery response of evergreen trees to fall fertilization has been studied widely, but little attention has been given to deciduous trees. Bareroot Olga Bay larch (Larix olgensis Henry) seedlings were fertilized in the nursery with urea at four rates (0,30,60,90 kg N ha(-1)), with half of each rate applied on two dates (September 16 and October 1,2009). The seedlings were excavated for evaluation on October 15. In the unfertilized (control) treatment, root and shoot dry mass increased by 100% and 57% respectively, while N concentration in the roots and shoots increased by 43% and 40% during the 30 clay period. This indicated that substantial biomass growth during this period did not lead to internal nutrient dilution. Root dry mass increased when fall fertilization rates were >= 60 kg N ha(-1). Fall fertilization increased N concentrations in root tissue by 48-73%. Compared with the control, shoot tissues of fall fertilized seedlings had slightly higher N concentration and content and significantly higher frost hardiness.
C1 [Li, Guolei; Liu, Yong; Zhu, Yan] Minist Educ, Key Lab Silviculture & Conservat, Beijing 100083, Peoples R China.
[Li, Qingmei] Chinese Acad Forestry, Res Inst Forestry, Key Lab Forest Silviculture State Forestry Adm, Beijing 100091, Peoples R China.
[Dumroese, R. Kasten] US Forest Serv, USDA, Rocky Mt Res Stn, Moscow, ID USA.
RP Li, GL (reprint author), Minist Educ, Key Lab Silviculture & Conservat, Beijing 100083, Peoples R China.
EM glli226@163.com; lyong@bjfu.eclu.cn
FU Fundamental Research Funds for the Central Universities [JD2011-3,
TD2011-08, BLJD200905]
FX The study was supported by the Fundamental Research Funds for the
Central Universities (Contract No. JD2011-3, TD2011-08 & BLJD200905). We
specially thank the Meteorological Observing Team in College of
Forestry, Beihua University for their assistance with providing weather
data; Mr. Richard R. Faltonson for editing the English of early
versions; and the anonymous reviewers for their insightful comments of
the manuscript.
NR 42
TC 7
Z9 8
U1 0
U2 8
PU FINNISH SOC FOREST SCIENCE-NATURAL RESOURCES INST FINLAND
PI VANTAA
PA PO BOX 18, FI-01301 VANTAA, FINLAND
SN 0037-5330
EI 2242-4075
J9 SILVA FENN
JI Silva. Fenn.
PY 2012
VL 46
IS 3
BP 345
EP 354
AR 45
DI 10.14214/sf.45
PG 10
WC Forestry
SC Forestry
GA 031QO
UT WOS:000310657200004
ER
PT S
AU Tilley, M
Chen, YR
Miller, RA
AF Tilley, M.
Chen, Y. R.
Miller, R. A.
BE Cauvain, SP
TI Wheat breeding and quality evaluation in the US
SO BREADMAKING: IMPROVING QUALITY, 2ND EDITION
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Article; Book Chapter
DE wheat; flour; bread; quality testing
ID CRUMB-GRAIN; GENETIC-IMPROVEMENT; IMAGE-ANALYSIS; BREAD; BREADMAKING;
FLOUR; DOUGH; SCORE
AB The United States of America (US) annually produces about 10% of the world wheat crop. Although wheat ranks third in terms of production value among field crops, behind maize and soybeans, it is the major US cereal grain for export and domestic consumption. Wheat is the most valuable food crop and the major export crop of the US, with about 50% entering the export market. This chapter discusses US wheat classification and grading, wheat breeding objectives related to major agronomic and end-use quality parameters and the contribution of wheat quality laboratories to varietal improvement. The different quality indices and tests for grain characteristics (test weight, kernel hardness, weight and size, and protein, moisture and ash contents), milling characteristics (flour yield and milling score), flour characteristics, dough characteristics (mixing properties), and internal and external characteristics of bread are described, as well as the different techniques used in predicting the breadmaking quality of wheat. Future trends and resources are highlighted.
C1 [Tilley, M.; Chen, Y. R.] ARS, USDA, Hard Winter Wheat Qual Lab, Ctr Grain & Anim Hlth Res, Manhattan, KS 66502 USA.
[Miller, R. A.] Kansas State Univ, Dept Grain Sci & Ind, Wheat Qual Lab, Manhattan, KS 66506 USA.
RP Tilley, M (reprint author), ARS, USDA, Hard Winter Wheat Qual Lab, Ctr Grain & Anim Hlth Res, 1515 Coll Ave, Manhattan, KS 66502 USA.
EM michael.tilley@ars.usda.gov
NR 26
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U1 1
U2 5
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-569-5
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 229
BP 216
EP 236
PG 21
WC Food Science & Technology
SC Food Science & Technology
GA BCH40
UT WOS:000310201600009
ER
PT J
AU Pikul, JL
Osborne, SL
Riedell, WE
AF Pikul, J. L., Jr.
Osborne, S. L.
Riedell, W. E.
TI Corn Yield and Nitrogen- and Water-Use under No-Tillage Rotations
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Nitrogen-use efficiency; no-tillage; water-use efficiency
ID CROPPING SYSTEMS; SOIL
AB Increased crop diversity and length of rotation may improve corn (Zea mays L.) yield and water-and nitrogen-use efficiency (WUE and NUE). The objectives of this study were to determine effects of crop rotation on corn yield, water use, and nitrogen (N) use. No-tillage (NT) crop rotations were started in 1997 on a Barnes clay loam (fine-loamy, mixed, superactive, frigid Calcic Hapludoll) near Brookings, S. D. Rotations were continuous corn (CC), corn-soybean [Glycine max (L.) Merr.] (CS), a 3-year rotation of corn-soybean-oat/pea (Avena sativa L. and Pisum sativum L.) hay (CSH), a 3-year rotation of corn-soybean-spring wheat (Triticum aestivum L.) (CSW), and a 5-year rotation of corn-soybean-oat/pea hay companion seeded with alfalfa (Medicago sativa L.)-alfalfa-alfalfa (CSHAA). Fertilizer N was applied to corn on all rotations at planting (16 kg N ha(-1)) and side-dressed (64 kg N ha(-1)). Average corn grain yields (1998-2007) were greatest under CSW (7.38 Mg ha(-1)) and least under CC (4.66 Mg ha(-1)). Yields were not different among CSH, CSW, and CSHAA rotations. Water-use efficiency of rotation was ordered as CSW > CSH > CSHAA > CS > CC. Nitrogen-use efficiency was greatest under CSW and least under CC. There were no differences in yield advantage (YA) among crop rotations during years with plentiful early-season rainfall (May 1-July 31). In years with low spring rainfall, YA was greatest under CSW (54%) and least under CSHAA (33%). Corn yields under extended rotations (CSH, CSW, and CSHAA) were greater than under CC and CS, but lack of rainfall may result in reduced yields under CSHAA.
C1 [Pikul, J. L., Jr.; Osborne, S. L.; Riedell, W. E.] USDA ARS, N Cent Agr Res Lab, Brookings, SD 57006 USA.
RP Osborne, SL (reprint author), USDA ARS, N Cent Agr Res Lab, 2923 Medary Ave, Brookings, SD 57006 USA.
EM shannon.osborne@ars.usda.gov
NR 23
TC 4
Z9 4
U1 3
U2 26
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 21
BP 2722
EP 2734
DI 10.1080/00103624.2012.719980
PG 13
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 030ZL
UT WOS:000310608600002
ER
PT S
AU Imam, SH
Glenn, GM
Chiellini, E
AF Imam, S. H.
Glenn, G. M.
Chiellini, E.
BE Yam, KL
Lee, DS
TI Utilization of biobased polymers in food packaging: assessment of
materials, production and commercialization
SO EMERGING FOOD PACKAGING TECHNOLOGIES: PRINCIPLES AND PRACTICE
SE Woodhead Publishing in Food Science Technology and Nutrition
LA English
DT Article; Book Chapter
DE biobased food packaging; starch; PHB; PLA; PHS; PVA; lignocellulosic
fiber
ID BAKED STARCH FOAMS; CONTAINING POLYETHYLENE FILM; POLY(VINYL ALCOHOL);
BIODEGRADABLE MATERIALS; POLYLACTIC ACID; CORN-STARCH; POLY(L-LACTIDE)
DEGRADATION; MECHANICAL-PROPERTIES; PLASTIC COMPOSITES; BAKING PROCESS
AB This chapter reviews alternatives to conventional synthetic food packaging materials. It discusses the environmental impact of synthetic plastic packaging. It then goes on to review biobased food packaging materials such as starch-based PHB and PLA polymers as well as PHAs and PVA. It outlines production methods for these materials together with hybrid blends and composites. The example of recycled lignocellulosic fiber is used as a case study. The chapter concludes by looking at ways of assessing the biodegradability of renewable packaging materials and life cycle assessment.
C1 [Imam, S. H.; Glenn, G. M.; Chiellini, E.] USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
[Chiellini, E.] Univ Pisa, Dept Chem & Ind Chem, Lab Bioact Polymer Mat Biomed & Environm Applicat, I-56122 Pisa, Italy.
RP Imam, SH (reprint author), USDA, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM Syed.Lmam@ARS.USDA.gov; emochie@dcci.unipi.it
NR 104
TC 3
Z9 3
U1 0
U2 7
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
SN 2042-8049
BN 978-0-85709-566-4
J9 WOODHEAD PUBL FOOD S
JI Woodhead Publ. Food Sci. Technol. Nutr.
PY 2012
IS 230
BP 435
EP 468
PG 34
WC Food Science & Technology; Materials Science, Multidisciplinary
SC Food Science & Technology; Materials Science
GA BCI16
UT WOS:000310236100022
ER
PT J
AU Shukitt-Hale, B
AF Shukitt-Hale, Barbara
TI Blueberries and Neuronal Aging
SO GERONTOLOGY
LA English
DT Article
DE Antioxidants; Cognition; Inflammation; Polyphenols; Signaling
ID BEHAVIORAL DEFICITS; DIETARY SUPPLEMENTATION; SIGNAL-TRANSDUCTION;
COGNITIVE-BEHAVIOR; RATS; MEMORY; PSYCHOMOTOR; PERFORMANCE; MODULATION;
STRAWBERRY
AB As the population of people in the United States over the age of 65 years continues to increase, so too will the incidence of age-related pathologies, including decreases in cognitive and motor function. In cases of severe deficits in memory or motor function, hospitalization and/or custodial care would be a likely outcome. This means that unless some way is found to reduce these age-related decrements in neuronal function, health care costs will continue to rise exponentially. Evidence is accumulating that consumption of blueberries may be one strategy to forestall or even reverse age-related neuronal deficits, as well as their subsequent behavioral manifestations, in order to increase healthy aging. Research suggests that the polyphenolic compounds found in blueberries exert their beneficial effects either through their ability to lower oxidative stress and inflammation or directly by altering the signaling involved in neuronal communication. These interventions, in turn, may protect against age-related deficits in cognitive and motor function. Appropriately, the US Department of Agriculture has figured prominently in these discoveries, through the efforts of two USDA researchers who worked for the department 100 years apart. Copyright (C) 2012 S. Karger AG, Basel
C1 Tufts Univ, USDA, Human Nutr Res Ctr Aging, ARS, Boston, MA 02111 USA.
RP Shukitt-Hale, B (reprint author), Tufts Univ, USDA, Human Nutr Res Ctr Aging, ARS, 711 Washington St, Boston, MA 02111 USA.
EM barbara.shukitthale@ars.usda.gov
NR 22
TC 17
Z9 17
U1 3
U2 16
PU KARGER
PI BASEL
PA ALLSCHWILERSTRASSE 10, CH-4009 BASEL, SWITZERLAND
SN 0304-324X
J9 GERONTOLOGY
JI Gerontology
PY 2012
VL 58
IS 6
BP 518
EP 523
DI 10.1159/000341101
PG 6
WC Geriatrics & Gerontology
SC Geriatrics & Gerontology
GA 030HR
UT WOS:000310562300006
PM 22907211
ER
PT J
AU Crow, WT
Kumar, SV
Bolten, JD
AF Crow, W. T.
Kumar, S. V.
Bolten, J. D.
TI On the utility of land surface models for agricultural drought
monitoring
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID CATCHMENT-BASED APPROACH; SOIL-MOISTURE; VEGETATION; INDEXES; SYSTEM;
PRECIPITATION
AB The lagged rank cross-correlation between model-derived root-zone soil moisture estimates and remotely sensed vegetation indices (VI) is examined between January 2000 and December 2010 to quantify the skill of various soil moisture models for agricultural drought monitoring. Examined modeling strategies range from a simple antecedent precipitation index to the application of modern land surface models (LSMs) based on complex water and energy balance formulations. A quasi-global evaluation of lagged VI/soil moisture cross-correlation suggests, when globally averaged across the entire annual cycle, soil moisture estimates obtained from complex LSMs provide little added skill (<5% in relative terms) in anticipating variations in vegetation condition relative to a simplified water accounting procedure based solely on observed precipitation. However, larger amounts of added skill (5-15% in relative terms) can be identified when focusing exclusively on the extra-tropical growing season and/or utilizing soil moisture values acquired by averaging across a multi-model ensemble.
C1 [Crow, W. T.] USDA, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Kumar, S. V.; Bolten, J. D.] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
[Kumar, S. V.] Sci Applicat Int Corp, Beltsville, MD USA.
RP Crow, WT (reprint author), USDA, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
EM wade.crow@ars.usda.gov
RI Kumar, Sujay/B-8142-2015
FU NASA; NASA Center for Climate Simulation
FX Research was supported by NASA Applied Sciences Grant entitled
"Enhancing the USDA Global Crop Production Decision Support System with
the NASA Land Information System and Water Cycle Satellite Observations"
(W. T. Crow - Principal Investigator). Computing was partially supported
by the resources at the NASA Center for Climate Simulation.
NR 29
TC 11
Z9 12
U1 2
U2 10
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
EI 1607-7938
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 9
BP 3451
EP 3460
DI 10.5194/hess-16-3451-2012
PG 10
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 029DQ
UT WOS:000310475400029
ER
PT B
AU Noh, SM
Brown, WC
AF Noh, Susan M.
Brown, Wendy C.
BE Palmer, GH
Azad, AF
TI ADAPTIVE IMMUNE RESPONSES TO INFECTION AND OPPORTUNITIES FOR VACCINE
DEVELOPMENT (ANAPLASMATACEAE)
SO INTERCELLULAR PATHOGENS II: RICKETTSIALES
LA English
DT Article; Book Chapter
ID HUMAN GRANULOCYTIC EHRLICHIOSIS; MAJOR SURFACE PROTEIN-2; OUTER-MEMBRANE
PROTEIN; ELONGATION-FACTOR-TU; IV SECRETION SYSTEM; HUMAN MONOCYTOTROPIC
EHRLICHIOSIS; ENDOSYMBIOTIC WOLBACHIA-BACTERIA; EXPERIMENTAL CANINE
EHRLICHIOSIS; WESTERN IMMUNOBLOT ANALYSIS; MOLECULAR-WEIGHT PROTEINS
C1 [Noh, Susan M.] ARS, Anim Dis Res Unit, USDA, Pullman, WA 99164 USA.
[Brown, Wendy C.] Washington State Univ, Dept Vet Microbiol & Pathol, Program Vector Borne Dis, Pullman, WA 99164 USA.
RP Noh, SM (reprint author), ARS, Anim Dis Res Unit, USDA, Pullman, WA 99164 USA.
NR 231
TC 2
Z9 2
U1 0
U2 2
PU AMER SOC MICROBIOLOGY
PI WASHINGTON
PA 1752 N STREET NW, WASHINGTON, DC 20036-2904 USA
BN 978-1-55581-733-6
PY 2012
BP 330
EP 365
DI 10.1128/9781555817336.ch11
PG 36
WC Biochemistry & Molecular Biology; Infectious Diseases; Microbiology
SC Biochemistry & Molecular Biology; Infectious Diseases; Microbiology
GA BCI78
UT WOS:000310252800012
ER
PT J
AU Pontieri, P
De Vita, P
Boffa, A
Tuinstra, MR
Bean, SR
Krishnamoorthy, G
Miller, C
Roemer, E
Alifano, P
Pignone, D
Massardo, DR
Del Giudice, L
AF Pontieri, Paola
De Vita, Pasquale
Boffa, Antonio
Tuinstra, Mitchell R.
Bean, Scott R.
Krishnamoorthy, Gabriel
Miller, Charles
Roemer, Earl
Alifano, Pietro
Pignone, Domenico
Massardo, Domenica Rita
Del Giudice, Luigi
TI Yield and morpho-agronomical evaluation of food-grade white sorghum
hybrids grown in Southern Italy
SO JOURNAL OF PLANT INTERACTIONS
LA English
DT Article
DE food-grade sorghum; sorghum hybrid; yield; celiac disease
ID BICOLOR L. MOENCH; GRAIN-SORGHUM; CELIAC-DISEASE; SWEET SORGHUM; FIBER
SORGHUM; PEARL-MILLET; IN-VITRO; WHEAT; COMPONENTS; BREAD
AB Grain sorghum [Sorghum bicolor (L.) Moench] is a gluten-free grain that is gaining attention as a food crop that can be used in the management of celiac disease. At present, sorghum is widely grown in many semiarid regions of the world. New food-grade sorghum cultivars are of particular interest in Mediterranean countries due to improved quality characteristics and gluten-free status of the grains. Until now very few studies have examined the grain yield (GYLD) and agronomic performance characteristics of food-grade sorghum hybrids in Italy. A 2 year study was conducted to evaluate the agronomic performance of eight food-grade sorghum hybrids representing different maturity classes in trials conducted in Southern Italy. The results showed wide variation in adaptation of these hybrids as measured by differences in GYLD (2.35-8.50 t ha(-1)) and other phenomorphological characteristics. Of particular interest was the fact that many of the early-flowering hybrids (e. g. SP-X303) performed better than the later-flowering hybrids (e. g. ArchX-02). These results demonstrated that flowering time of hybrid and crop cycle length are important factors to consider in selecting cultivars for production in the Mediterranean region.
C1 [Pontieri, Paola; Boffa, Antonio; Massardo, Domenica Rita; Del Giudice, Luigi] CNR Port, Dipartimento Biol, Sez Igiene, IGV, I-80134 Naples, Italy.
[Pontieri, Paola; Massardo, Domenica Rita; Del Giudice, Luigi] CNR, IGB ABT, I-80131 Naples, Italy.
[De Vita, Pasquale] Ctr Ric Cerealicoltura CRA, I-71100 Foggia, Italy.
[Tuinstra, Mitchell R.] Purdue Univ, Dept Agron, W Lafayette, IN 47907 USA.
[Bean, Scott R.] USDA ARS, GMPRC, Manhattan, KS 66502 USA.
[Krishnamoorthy, Gabriel; Miller, Charles] Richardson Seeds MMR Genet, Vega, TX 79092 USA.
[Alifano, Pietro] Univ Salento, Dipartimento Sci & Tecnol Biol & Ambientali, I-73100 Lecce, Italy.
[Pignone, Domenico] CNR, Ist Genet Vegetale, I-70126 Bari, Italy.
RP Pontieri, P (reprint author), CFM Consulting Serv, 8 Maple Lane, Bremen, ME 04551 USA.
EM paola.pontieri@igb.cnr.it
OI Bean, Scott/0000-0001-8678-8094; De Vita, Pasquale/0000-0002-9573-0510
FU Regione Campania; Istituto Banco di Napoli, Fondazione; Compagnia di San
Paolo special grant; iniziativa
FX The research was supported by Regione Campania special grant (P.S.R.
2007-2013, Misura 124) to P. Pontieri, and partly supported both by
Istituto Banco di Napoli, Fondazione special grant; research project;
and by Compagnia di San Paolo special grant; iniziativa; to L. Del
Giudice. P. Pontieri was supported by a postdoctoral grant from the
Istituto Banco di Napoli, Fondazione.
NR 39
TC 1
Z9 1
U1 0
U2 9
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1742-9145
J9 J PLANT INTERACT
JI J. Plant Interact.
PY 2012
VL 7
IS 4
BP 341
EP 347
DI 10.1080/17429145.2012.705340
PG 7
WC Plant Sciences; Ecology
SC Plant Sciences; Environmental Sciences & Ecology
GA 030UZ
UT WOS:000310596900009
ER
PT J
AU Guerrero, FD
Lovis, L
Martins, JR
AF Guerrero, Felix David
Lovis, Leonore
Martins, Joao Ricardo
TI Acaricide resistance mechanisms in Rhipicephalus (Boophilus) microplus
SO REVISTA BRASILEIRA DE PARASITOLOGIA VETERINARIA
LA English
DT Review
DE Cattle tick; resistance mechanisms; target site mutation; metabolism
ID SOUTHERN CATTLE TICK; SODIUM-CHANNEL GENE; PYRETHROID-RESISTANCE;
SUSCEPTIBLE STRAINS; ORGANOPHOSPHATE-RESISTANT; AMITRAZ RESISTANCE;
MEXICAN STRAINS; 1ST REPORT; IXODIDAE; IDENTIFICATION
AB Acaricide resistance has become widespread in countries where cattle ticks, Rhipicephalus (Boophilus) microplus, are problem. Resistance arises through genetic changes in a cattle tick population that causes modifications to the target site, increased metabolism or sequestration of the acaricide, or reduced ability of the acaricide to penetrate through the outer. protective layers of the tick's body. We review the molecular and biochemical mechanisms of acaricide resistance that have been shown to be functional in R. (B.) microplus. From a mechanistic point of view, resistance to pyrethroids has been characterized to a greater degree than any other acaricide class. Although a great deal of research has gone into discovery of the mechanisms that cause organophosphate resistance, very little is defined at the molecular level and organophosphate resistance seems to be maintained through a complex and multifactorial process. The resistance mechanisms for other acaricides are less well understood. The target sites of fipronil and the macrocyclic lactones are known and resistance mechanism studies are in the early stages. The target site of amitraz has not been definitively identified and this is hampering mechanistic studies on this acaricide.
C1 [Guerrero, Felix David] USDA ARS, KBUSLIRL, Kerrville, TX 78006 USA.
RP Guerrero, FD (reprint author), USDA ARS, KBUSLIRL, 2700 Fredericksburg Rd, Kerrville, TX 78006 USA.
EM felix.guerrero@ars.usda.gov
FU USDA-ARS Knipling Bushland US Livestock Insect Research Laboratory CRIS
Project [6205-32000-031-00]
FX We thank Deanna Bodine for technical help with sodium channel mutation
assays and Drs. Andrew Li and Robert Miller of their review of the
manuscript. FDG acknowledges funding support from the USDA-ARS Knipling
Bushland US Livestock Insect Research Laboratory CRIS Project Number
6205-32000-031-00. USDA is an equal opportunity provider and employer.
NR 46
TC 42
Z9 43
U1 1
U2 10
PU BRAZILIAN COLL VETERINARY PARASITOLOGY
PI SAO PAULO
PA C/O ASSISTANT EDITOR AV PROF LINEU PRESTES, 1374, CIDADE UNIVERSITARIA,
CEP 05508-900, SAO PAULO, 00000, BRAZIL
SN 0103-846X
J9 REV BRAS PARASITOL V
JI Rev. Bras. Parasitol. Vet.
PD JAN-MAR
PY 2012
VL 21
IS 1
BP 1
EP 6
PG 6
WC Parasitology; Veterinary Sciences
SC Parasitology; Veterinary Sciences
GA 032YZ
UT WOS:000310760400002
PM 22534937
ER
PT J
AU Lyapustin, A
Korkin, S
Wang, Y
Quayle, B
Laszlo, I
AF Lyapustin, A.
Korkin, S.
Wang, Y.
Quayle, B.
Laszlo, I.
TI Discrimination of biomass burning smoke and clouds in MAIAC algorithm
SO ATMOSPHERIC CHEMISTRY AND PHYSICS
LA English
DT Article
ID AEROSOL PROPERTIES; OPTICAL DEPTH; ABSORPTION; RETRIEVAL
AB The Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm makes aerosol retrievals from MODIS data at 1 km resolution providing information about the fine scale aerosol variability. This information is required in different applications such as urban air quality analysis, aerosol source identification etc. The quality of high resolution aerosol data is directly linked to the quality of cloud mask, in particular detection of small (sub-pixel) and low clouds. This work continues research in this direction, describing a technique to detect small clouds and introducing the "smoke test" to discriminate the biomass burning smoke from the clouds. The smoke test relies on a relative increase of aerosol absorption at MODIS wavelength 0.412 mu m as compared to 0.47-0.67 mu m due to multiple scattering and enhanced absorption by organic carbon released during combustion. This general principle has been successfully used in the OMI detection of absorbing aerosols based on UV measurements. This paper provides the algorithm detail and illustrates its performance on two examples of wildfires in US Pacific North-West and in Georgia/Florida of 2007.
C1 [Lyapustin, A.] NASA, Goddard Space Flight Ctr, Atmospheres Lab, Greenbelt, MD 20771 USA.
[Korkin, S.] Univ Space Res Assoc, Columbia, MD USA.
[Wang, Y.] Univ Maryland Baltimore Cty, Baltimore, MD 21228 USA.
[Quayle, B.] US Forest Serv, USDA, Salt Lake City, UT USA.
[Laszlo, I.] NOAA, NESDIS, STAR, Camp Springs, MD USA.
RP Lyapustin, A (reprint author), NASA, Goddard Space Flight Ctr, Atmospheres Lab, Greenbelt, MD 20771 USA.
EM alexei.i.lyapustin@nasa.gov
RI Laszlo, Istvan/F-5603-2010; Lyapustin, Alexei/H-9924-2014
OI Laszlo, Istvan/0000-0002-5747-9708; Lyapustin,
Alexei/0000-0003-1105-5739
FU NASA Terrestrial Ecology Program; NOAA GOES-R program
FX The research of A. Lyapustin, Y. Wang and S. Korkin was funded by the
NASA Terrestrial Ecology Program (D. Wickland) and in part by the NOAA
GOES-R program (M. Goldberg). The work of I. Laszlo is supported by the
NOAA GOES-R program.
NR 24
TC 6
Z9 6
U1 0
U2 11
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1680-7316
EI 1680-7324
J9 ATMOS CHEM PHYS
JI Atmos. Chem. Phys.
PY 2012
VL 12
IS 20
BP 9679
EP 9686
DI 10.5194/acp-12-9679-2012
PG 8
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 029BS
UT WOS:000310470400015
ER
PT J
AU Brandon, DL
AF Brandon, David L.
TI Electrochemiluminescence immunosorbent assay of ricin in ground beef:
biotinylated capture antibodies and matrix effects
SO FOOD AND AGRICULTURAL IMMUNOLOGY
LA English
DT Article
DE ricin; Ricinus communis agglutinin; castor; monoclonal antibody;
biothreat; electrochemiluminescence; ground beef
ID CONTAMINATION
AB Ricin is a highly toxic protein present in the seeds of castor (Ricinus communis), grown principally as a source of high quality industrial lubricant. Because of the past use of ricin for intentional poisoning, there is a need for analytical methodology to detect ricin in food matrices. Ground beef and other fatty, solid matrices present challenges for extraction and detection of protein constituents. This study focused on the use of streptavidin-coated assay plates, with biotinylated monoclonal antibodies (mAbs) immobilised as capture reagents. It explored matrix effects on immunosorbent analyses of ricin in enzyme-linked and electrochemiluminescent detection systems. A variety of mAb pairs enabled assays with predetermined specificity for ricin vs. the related protein, Ricinus communis agglutinin-1 (RCA-1). Extraction of samples at low dilution (1: 5) and inclusion of 100 mM galactose in the extraction medium produced excellent quantification of ricin in the 1-20 ng/g range in ground beef.
C1 USDA ARS, Foodborne Contaminants Res Unit, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Brandon, DL (reprint author), USDA ARS, Foodborne Contaminants Res Unit, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM david.brandon@ars.usda.gov
NR 16
TC 2
Z9 2
U1 1
U2 8
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0954-0105
EI 1465-3443
J9 FOOD AGR IMMUNOL
JI Food Agric. Immunol.
PY 2012
VL 23
IS 4
BP 329
EP 337
DI 10.1080/09540105.2011.629315
PG 9
WC Chemistry, Applied; Food Science & Technology; Immunology; Toxicology
SC Chemistry; Food Science & Technology; Immunology; Toxicology
GA 030ZR
UT WOS:000310609200003
ER
PT S
AU Yang, FZ
Lu, Y
Liu, YC
Lan, YB
Liu, DB
Wang, Z
AF Yang, Fuzeng
Lu, Yi
Liu, Yongcheng
Lan, Yubin
Liu, Debo
Wang, Zheng
BE Sung, WP
Kao, JCM
Chen, R
TI Design and Preliminary Test of Tiny Remote Controlled Electric Tractor
Used in Greenhouse
SO FRONTIERS OF MECHANICAL ENGINEERING AND MATERIALS ENGINEERING, PTS 1 AND
2
SE Applied Mechanics and Materials
LA English
DT Proceedings Paper
CT International Conference on Frontiers of Mechanical Engineering and
Materials Engineering (MEME 2012)
CY JUL 27-29, 2012
CL Hong Kong, PEOPLES R CHINA
SP Int Frontiers Sci & Technol Res Assoc, Hong Kong Control Engn & Informat Sci Res Assoc
DE Greenhouse; Electric tractor; Design; Preliminary test
AB To solve the problems of labor intensity, inconvenient operation, serious pollution and big noise in greenhouse, a kind of tiny remote controlled electric tractor was proposed in this paper, then preliminary tests on road and in field were did. The results showed that the prototype can complete normal remote plow operation, simultaneously has the advantages of low-carbon environment protection, low operating cost, easy operation and low noise.
C1 [Yang, Fuzeng; Lu, Yi; Liu, Yongcheng; Liu, Debo; Wang, Zheng] NW A&F Univ, Coll Mech & Elect Engn, Yangling 712100, Peoples R China.
[Lan, Yubin] USDA ARS, Weslaco, TX 78596 USA.
RP Yang, FZ (reprint author), NW A&F Univ, Coll Mech & Elect Engn, Yangling 712100, Peoples R China.
EM yfz0701@163.com; luyi5814348@yahoo.com.cn; wangzh925@163.com
NR 17
TC 0
Z9 0
U1 1
U2 12
PU TRANS TECH PUBLICATIONS LTD
PI DURNTEN-ZURICH
PA KREUZSTRASSE 10, 8635 DURNTEN-ZURICH, SWITZERLAND
SN 1660-9336
BN 978-3-03785-441-9
J9 APPL MECH MATER
PY 2012
VL 184-185
BP 1533
EP +
DI 10.4028/www.scientific.net/AMM.184-185.1533
PG 2
WC Engineering, Mechanical; Materials Science, Multidisciplinary; Mechanics
SC Engineering; Materials Science; Mechanics
GA BCI88
UT WOS:000310257500319
ER
PT J
AU de Sousa, SM
Clark, RT
Mendes, FF
de Oliveira, AC
de Vasconcelos, MJV
Parentoni, SN
Kochian, LV
Guimaraes, CT
Magalhaes, JV
AF de Sousa, Sylvia Morais
Clark, Randy T.
Mendes, Flavia Ferreira
de Oliveira, Antonio Carlos
Vilaca de Vasconcelos, Maria Jose
Parentoni, Sidney Netto
Kochian, Leon V.
Guimaraes, Claudia Teixeira
Magalhaes, Jurandir Vieira
TI A role for root morphology and related candidate genes in P acquisition
efficiency in maize
SO FUNCTIONAL PLANT BIOLOGY
LA English
DT Article
DE gene expression; phosphate deficiency; phosphorus nutrition; plant
stresses; root morphology; Zea mays
ID ZEA-MAYS L.; LOW PHOSPHORUS AVAILABILITY; ARABIDOPSIS-THALIANA
BRASSICACEAE; BEAN PHASEOLUS-VULGARIS; ALUMINUM TOLERANCE; BASAL ROOTS;
GROWTH; DEFICIENCY; PHOSPHATE; DIAMETER
AB Phosphorus (P) is an essential nutrient for plants and is acquired from the rhizosphere solution as inorganic phosphate. P is one of the least available mineral nutrients, particularly in highly weathered, tropical soils, and can substantially limit plant growth. The aim of this work was to study a possible effect of root morphology and the expression pattern of related candidate genes on P efficiency in maize. Our field phenotyping results under low and high P conditions enabled us to identify two contrasting genotypes for P acquisition efficiency that were used for the root traits studies. Root morphology was assessed in a paper pouch system to investigate root traits that could be involved in P acquisition efficiency. The genes, Rtcs, Bk2 and Rth3, which are known to be involved in root morphology, showed higher expression in the P efficient line relative to the P inefficient line. Overall, root traits showed high heritability and a low coefficient of variation. Principal component analysis revealed that out of the 24 root traits analysed, only four root traits were needed to adequately represent the diversity among genotypes. The information generated by this study will be useful for establishing early selection strategies for P efficiency in maize, which are needed to support subsequent molecular and physiological studies.
C1 [de Sousa, Sylvia Morais; Mendes, Flavia Ferreira; de Oliveira, Antonio Carlos; Vilaca de Vasconcelos, Maria Jose; Parentoni, Sidney Netto; Guimaraes, Claudia Teixeira; Magalhaes, Jurandir Vieira] Embrapa Maize & Sorghum, BR-35701970 Sete Lagoas, MG, Brazil.
[Clark, Randy T.; Kochian, Leon V.] Cornell Univ, Robert W Holley Ctr Agr & Hlth, USDA ARS, Ithaca, NY 14853 USA.
[Mendes, Flavia Ferreira] Univ Fed Lavras, BR-3720000 Lavras, MG, Brazil.
RP de Sousa, SM (reprint author), Embrapa Maize & Sorghum, CP151, BR-35701970 Sete Lagoas, MG, Brazil.
EM smsousa@cnpms.embrapa.br
OI Kochian, Leon/0000-0003-3416-089X
FU CNPq; Embrapa; Fapemig; McKnight Foundation; Generation Challenge
Program (GCP)
FX The authors thank Gislene Rodrigues Braga Cristeli for technical
assistance with growth chamber experiments; Cristiane de Carvalho
Guimaraes and Paulo Eduardo de Aquino Ribeiro for phosphorus analyses;
and Cynthia Maria Borges Damasceno for helpful comments and suggestions
on the manuscript. FFM, CTG and JVM were recipients of a research
fellowship from CNPq. This research was supported by Embrapa, CNPq,
Fapemig, McKnight Foundation and Generation Challenge Program (GCP).
NR 59
TC 16
Z9 16
U1 4
U2 44
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1445-4408
J9 FUNCT PLANT BIOL
JI Funct. Plant Biol.
PY 2012
VL 39
IS 10-11
SI SI
BP 925
EP 935
DI 10.1071/FP12022
PG 11
WC Plant Sciences
SC Plant Sciences
GA 027VA
UT WOS:000310380800011
ER
PT J
AU Windham, WR
Yoon, SC
Ladely, SR
Heitschmidt, JW
Lawrence, KC
Park, B
Narrang, N
Cray, WC
AF Windham, William R.
Yoon, Seung-Chul
Ladely, Scott R.
Heitschmidt, Jerry W.
Lawrence, Kurt C.
Park, Bosoon
Narrang, Neelam
Cray, William C.
TI The effect of regions of interest and spectral pre-processing on the
detection of non-0157 Shiga-toxin producing Escherichia coli serogroups
on agar media by hyperspectral imaging
SO JOURNAL OF NEAR INFRARED SPECTROSCOPY
LA English
DT Article
DE Escherichia coli; STEC non-0157; visible and near infrared hyperspectral
image; regions of interest; pre-processing; detection; Mahalanobis
distance
ID TRANSFORM-INFRARED-SPECTROSCOPY; MULTIVARIATE-ANALYSIS; RAPID DETECTION;
IDENTIFICATION; DIFFERENTIATION; CHEMOMETRICS; DISCRIMINATION;
CONTAMINATION; CALIBRATION; BACTERIA
AB Foodborne infection caused by Shiga toxin-producing Escherichia colt (STEC) is a major worldwide health concern. The best known and highly virulent STEC serogroup is E. colt 0157:H7, which can be easily identified when cultured on sorbitol MacConkey (SMAC) agar. Recently, six non-0157 STEC serogroups have been found to cause human illnesses. These non-0157 serogroups ferment sorbital and form pink colonies; therefore SMAC agar cannot be used to differentiate non-0157 serogroups from each other and other flora growing on the plate. This study investigated the potential of visible and near infrared hyperspectral imaging and chemometrics to spectrally differentiate six representative non-0517 STEC serogroups (026, 045, 0103, 0111, 0121 and 0145) grown as spots on Rainbow agar media. Mahalanobis distance classifiers were developed with spectra obtained from ground truth regions of interest (ROIs) of each serogroup colony. The ROIs were selected as a doughnut-like open-ellipse to only include the leading edge of growth and as a closed-ellipse covering the entire colony. For each ROI type, the Mahalanobis distance classifiers were developed with log (1/Reflectance), first derivative and standard normal variate and detrending (SNVD) pre-processing treatments. Serogroups 045 and 0121 were consistently classified over 98% accurate, regardless of the classification algorithm used. The lowest classification accuracies were from classifiers developed with only log (1/R) ROI spectra. First derivative and SNVD spectra helped to increase the detection accuracies of the other serogroups. The classification accuracy for serogroups 026, 0111, 0103 and 0145 with the closed-ellipse and open-ellipse classification algorithms showed varying results from 8% to 87% and 57% to 100%, respectively. The lower accuracies with closed ellipse spectra were due to greater spectral variation in the centre pixels on a per-pixel basis. Practical implications of this study are the demonstrated potential of hyperspectral imaging for presumptive-positive screening of non-0157 serogroups on Rainbow agar and the extensibility of the developed sampling methods and classification models for future research to identify the target bacteria in the presence of background flora grown on spread plates.
C1 [Windham, William R.; Yoon, Seung-Chul; Heitschmidt, Jerry W.; Lawrence, Kurt C.; Park, Bosoon] ARS, Qual & Safety Assessment Res Unit, USDA, Athens, GA USA.
[Ladely, Scott R.; Narrang, Neelam; Cray, William C.] Food Safety Inspect Serv, Outbreak Sect, Eastern Lab, USDA, Athens, GA USA.
RP Windham, WR (reprint author), ARS, Qual & Safety Assessment Res Unit, USDA, Athens, GA USA.
EM bob.windham@ars.usda.gov
NR 33
TC 14
Z9 14
U1 1
U2 14
PU N I R PUBLICATIONS
PI CHICHESTER
PA 6 CHARLTON MILL, CHARLTON, CHICHESTER PO18 0HY, WEST SUSSEX, ENGLAND
SN 0967-0335
J9 J NEAR INFRARED SPEC
JI J. Near Infrared Spectrosc.
PY 2012
VL 20
IS 5
SI SI
BP 547
EP 558
DI 10.1255/jnirs.1004
PG 12
WC Chemistry, Applied; Spectroscopy
SC Chemistry; Spectroscopy
GA 022TY
UT WOS:000309987900007
ER
PT J
AU McCreary, A
Seekamp, E
Cerveny, LK
Carver, AD
AF McCreary, Allie
Seekamp, Erin
Cerveny, Lee K.
Carver, Andrew D.
TI Natural Resource Agencies and Their Motivations to Partner: The Public
Lands Partnership Model
SO LEISURE SCIENCES
LA English
DT Article
DE motivations; organizational behavior; partnerships; recreation
management; USDA Forest Service
ID HELPING-BEHAVIOR; COLLABORATION
AB Public land management agencies, such as the USDA Forest Service (USFS), utilize partnerships to accomplish a variety of tasks and meet specific targets. However, public agency personnel invest considerable time and energy to develop and maintain partnerships. Research on partnering motivations typically focuses on volunteers, nonprofit organizations and corporations, leaving the motivations of public agency personnel relatively unknown. This paper presents findings from a multiple partnership case study design on six national forests. The Public Lands Partnership Model (PLPM) is presented as a conceptualization of 13 motivations, classified into 3 distinct motivation types (i.e., interpersonal, intrapersonal, and institutional), that influence the propensity of agency personnel to partner. Additional influences, such as national forests' external environment and internal commitment, need further exploration to confirm the PLPM and generalize results to the USFS and other agencies engaged in public land management partnerships.
C1 [Seekamp, Erin] N Carolina State Univ, Dept Pk Recreat & Tourism Management, Raleigh, NC 27695 USA.
[McCreary, Allie; Carver, Andrew D.] So Illinois Univ Carbondale, Dept Forestry, Carbondale, IL USA.
[Cerveny, Lee K.] US Forest Serv, Pacific NW Res Stn, Seattle, WA USA.
RP Seekamp, E (reprint author), N Carolina State Univ, Dept Pk Recreat & Tourism Management, Box 8004,Biltmore Hall, Raleigh, NC 27695 USA.
EM elseekam@ncsu.edu
NR 44
TC 1
Z9 1
U1 1
U2 6
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0149-0400
J9 LEISURE SCI
JI Leis. Sci.
PY 2012
VL 34
IS 5
BP 470
EP 489
DI 10.1080/01490400.2012.714707
PG 20
WC Hospitality, Leisure, Sport & Tourism; Sociology
SC Social Sciences - Other Topics; Sociology
GA 030RZ
UT WOS:000310589100006
ER
PT J
AU Shim, E
Yeum, KJ
Tang, GW
Ahn, SH
Hwang, J
Lee-Kim, YC
AF Shim, Eugene
Yeum, Kyung-Jin
Tang, Guangwen
Ahn, Sei Hyun
Hwang, Jinah
Lee-Kim, Yang Cha
TI Retinoids, Carotenoids, and Tocopherols in Breast Adipose Tissue and
Serum of Benign Breast Disease and Breast Cancer Patients
SO NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL
LA English
DT Article
ID PLASMA CAROTENOIDS; RECEPTOR-BETA; PPAR-GAMMA; VITAMIN-A; CELLS; ACID;
ISOTRETINOIN; PREVENTION; BIOMARKERS; APOPTOSIS
AB Various retinoic acid (RA) isomers (all-trans, 13-cis, 11-cis, and 9-cis) as well as retinol, carotenoids, and tocopherol concentrations were determined in both serum and breast adipose tissue of 22 benign breast disease patients and 52 breast cancer patients categorized into 4 stages by malignancy. Serum RA isomers were analyzed by a newly developed sensitive method combining a high performance liquid chromatography and a gas chromatography-mass spectrometry, and retinol, carotenoid, and tocopherol concentrations using a high-performance liquid chromatography system. The breast cancer patients showed significantly lower serum retinol, whereas significantly higher breast adipose tissue retinol concentration than those of benign breast disease patients. Although breast cancer patients showed significantly higher serum all-trans and 13-cis RA concentrations, 11-cis RA in breast adipose tissue was significantly lower in the breast cancer patients than those of benign breast disease patients and it was associated with the stage of malignancy. The current study indicates that the retinol and RA isomers in the target tissue of breast tumor patients are not reflecting their concentrations in circulation. The mechanisms of tissue specific uptake of RA isomers and their functions warrant further studies.
C1 [Yeum, Kyung-Jin; Tang, Guangwen] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Shim, Eugene] Yonsei Univ Hlth Syst, Natl Hypertens Ctr, Seoul, South Korea.
[Ahn, Sei Hyun] Univ Ulsan, Coll Med, Dept Surg, Seoul, South Korea.
[Ahn, Sei Hyun] Asan Med Ctr, Seoul, South Korea.
[Hwang, Jinah] Myongji Univ, Coll Nat Sci, Dept Foods & Nutr, Yongin, South Korea.
[Lee-Kim, Yang Cha] Yonsei Univ, Dept Food & Nutr, Res Inst Food & Nutr Sci, Seoul 120749, South Korea.
RP Yeum, KJ (reprint author), Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM kyungjin.yeum@tufts.edu
FU Korea Research Foundation [KRF-2003-042-C20116]; U.S. Department of
Agriculture [58-1950-51000-065-08S]
FX This research has been supported in part by the Korea Research
Foundation Grant (KRF-2003-042-C20116) and U.S. Department of
Agriculture, under agreement number 58-1950-51000-065-08S. Any opinions,
findings, conclusion, or recommendations expressed in this publication
are those of the authors and do not necessarily reflect the view of the
U.S. Department of Agriculture. The authors thank the volunteers who
participated in this study and acknowledge no conflict of interest.
NR 41
TC 6
Z9 6
U1 1
U2 9
PU ROUTLEDGE JOURNALS, TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXFORDSHIRE, ENGLAND
SN 0163-5581
J9 NUTR CANCER
JI Nutr. Cancer
PY 2012
VL 64
IS 7
BP 956
EP 963
DI 10.1080/01635581.2012.717678
PG 8
WC Oncology; Nutrition & Dietetics
SC Oncology; Nutrition & Dietetics
GA 026VG
UT WOS:000310310600007
PM 23061903
ER
PT J
AU Wyman, M
Malone, S
Stein, T
Johnson, C
AF Wyman, Miriam
Malone, Sparkle
Stein, Taylor
Johnson, Cassandra
TI Race and Wildfire Risk Perceptions among Rural Forestland Owners in
North-Central Florida
SO SOCIETY & NATURAL RESOURCES
LA English
DT Article
DE Florida; nonindustrialized private landowners; race; wildfire
ID WILDLAND-URBAN INTERFACE; UNITED-STATES; DEFENSIBLE SPACE; MANAGEMENT;
FIRE; MITIGATION; MINNESOTA; PROGRAMS; PLACE; SOUTH
AB The southern United States is susceptible to wildfire, from its climate, growing seasons, lightning frequency, and decades of fire suppression. With much known about wildfire's biophysical risks, less is understood about sociodemographic obstacles, including race, income, and education. Blacks in the rural southeastern United States are typically among the most marginalized Americans and least likely to have sufficient knowledge about resource protection. Because disaster preparedness has been shown to vary by sociodemographic status and race, this study focused on race and wildfire prevention by rural forestland owners in north-central Florida. Results show that while Whites were more aware of existing resources, they were less likely to incorporate preventative measures. In contrast, Blacks earned lower incomes and utilized their land less, but were more likely to manage and live on their land. We conclude that wildfire mitigation programs may be more effective when they work to connect absentee rural land owners to their land.
C1 [Wyman, Miriam] Utah State Univ, Dept Environm & Soc, Logan, UT 84322 USA.
[Malone, Sparkle; Stein, Taylor] Univ Florida, Sch Forest Resources & Conservat, Gainesville, FL 32611 USA.
[Johnson, Cassandra] US Forest Serv, USDA, So Res Stn, Athens, GA USA.
RP Wyman, M (reprint author), Utah State Univ, Dept Environm & Soc, 5215 Old Main Hill, Logan, UT 84322 USA.
EM miriam.wyman@usu.edu
NR 48
TC 3
Z9 3
U1 1
U2 8
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0894-1920
J9 SOC NATUR RESOUR
JI Soc. Nat. Resour.
PY 2012
VL 25
IS 12
BP 1293
EP 1307
DI 10.1080/08941920.2012.681752
PG 15
WC Environmental Studies; Planning & Development; Sociology
SC Environmental Sciences & Ecology; Public Administration; Sociology
GA 030TR
UT WOS:000310593500006
ER
PT J
AU Schelhas, J
AF Schelhas, John
TI Unveiling the Whale: Discourses on Whales and Whaling
SO SOCIETY & NATURAL RESOURCES
LA English
DT Book Review
C1 [Schelhas, John] US Forest Serv, USDA, Athens, GA USA.
RP Schelhas, J (reprint author), US Forest Serv, USDA, Athens, GA USA.
NR 1
TC 0
Z9 0
U1 1
U2 3
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0894-1920
J9 SOC NATUR RESOUR
JI Soc. Nat. Resour.
PY 2012
VL 25
IS 12
BP 1340
EP 1342
DI 10.1080/08941920.2012.684317
PG 3
WC Environmental Studies; Planning & Development; Sociology
SC Environmental Sciences & Ecology; Public Administration; Sociology
GA 030TR
UT WOS:000310593500010
ER
PT J
AU Henry, TJ
AF Henry, Thomas J.
TI Revision of the Plant Bug Genus Tytthus (Hemiptera, Heteroptera,
Miridae, Phylinae)
SO ZOOKEYS
LA English
DT Article
DE Insecta; Hemiptera; Heteroptera; Miridae; revision; new species; hosts;
distribution; predatory habits; phylogeny
ID POPULATIONS; PREDATION; GUILD
AB The phyline bug genus Tytthus Fieber, previously containing 19 species, is revised. Isoproba Osborn and Drake, 1915, incorrectly placed in the subfamily Bryocorinae, tribe Dicyphini, is synonymized as a junior synonym of Tytthus Fieber, syn. n.; the only included species, Isoproba picea Osborn and Drake is transferred to Tytthus, comb. n., as the senior synonym of T. hondurensis Carvalho, syn. n.; and T. Koreanus Josifov and Kerzhner, 1972 is synonymized with T. chinensis (Stal 1860), syn. n.; and a lectotype for T. parviceps is designated. The six new species T. femoralis from Cuba, Ecuador, Guatemala, Jamaica, Mexico, and Peru, T. fuscicornis from New Mexico (USA), T. mexicanus from Mexico, T. pallidus from Brazil and Panama, T. uniformis from Arizona and New Mexico (USA), and T. wheeleri from the eastern United States are described, bringing the total number species for the genus to 24. A color adult habitus illustration of T. wheeleri, color photographs for each species (except T. juturnaiba Carvalho and Wallerstein), illustrations of male genitalia, scanning electron photomicrographs of selected structures of certain species, and an identification key are provided to facilitate species recognition. A phylogenetic analysis is offered to help infer relationships.
C1 USDA, Smithsonian Inst, Natl Museum Nat Hist, Systemat Entomol Lab,Agr Res Serv, Washington, DC 20013 USA.
RP Henry, TJ (reprint author), USDA, Smithsonian Inst, Natl Museum Nat Hist, Systemat Entomol Lab,Agr Res Serv, MRC-168, Washington, DC 20013 USA.
EM thomas.henry@ars.usda.gov
FU Planetary Biodiversity Program (PBI); Willi Hennig Society; NSF
Planetary Biodiversity Inventory (PBI) award [DEB-0316495]
FX I am grateful to A. G. Wheeler, Jr. (Clemson University, Clemson, SC)
for allowing me to study the considerable amount of U. S. material he
collected, including that representing three new species; Charles
Triplehorn (OSU) for lending the Osborn and Drake type of Isoproba
picea; Michele Touchet (Systematic Entomology Laboratory [SEL], ARS,
USDA, do USNM) for the color plates; Randall T. Schuh (AMNH), Robert
Foottit and Michael D. Schwartz (CNC), Shephard Myers (BPBM), S. H. Lee
and R. K. Duwal (SNU), and R. S. Zack (WSU) for lending numerous
important specimens from their institutions and, in the case of Dr.
Schuh, numerous specimens borrowed from other institutions (as noted in
the text) through the auspices of the Planetary Biodiversity Program
(PBI); Michael Wilson (NMW) and Mick Webb (BMNH) for allowing me to
visit and study material in their collections; the late Robert F. Denno
(Department of Entomology, University of Maryland, College Park) for
sharing observations on two species of Tytthus and for sending reprints
his papers involving these predators; Katrina Menard (Sam Noble Museum,
University of Oklahoma, Norman) for sharing her preliminary phylogenetic
data on Leucophoropterini and the position of Tytthus; Scott D.
Whittaker (SEM Lab Manager, Smithsonsian Institution, Washington, DC)
for assistance with the SEM work; Geoffrey Thompson (Visiting scientific
illustrator, Queensland Museum, Brisbane, Australia) for the color
habitus illustration of T. wheeleri; Taina Litwak (SEL) for digitally
rendering the genitalic illustrations; A. G. Wheeler, Jr. and Lutz
Rastaetter (Greenbelt, Maryland) for translating Josifov and Kerzhner's
(1972) German description and discussion of T. koreanus; Sonja Scheffer
and Matthew Lewis (SEL) for their discussions on barcoding specimens of
T. chinensis and T. parviceps; and the Willi Hennig Society for
sponsoring free acccess to TNT by Goloboff et al. (2008). This paper was
initiated as a contribution to the NSF Planetary Biodiversity Inventory
(PBI) award DEB-0316495 (2004-2008) to R. T. Schuh and Gerasimos Cassis,
principal investigators (http://research.amnh.org/pbi/). R. R. Kula
(SEL), M. G. Pogue (SEL), M. D. Schwartz (CNC), R. T Schuh (AMNH), and
A. G. Wheeler, Jr. (Clemson University, Clemson, SC) kindly reviewed the
manuscript and offered numerous comments for its improvement. USDA is an
equal opportunity provider and employer.
NR 144
TC 6
Z9 6
U1 1
U2 9
PU PENSOFT PUBL
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1313-2989
J9 ZOOKEYS
JI ZooKeys
PY 2012
IS 220
SI SI
BP 1
EP 114
DI 10.3897/zookeys.220.2178
PG 114
WC Zoology
SC Zoology
GA 028CJ
UT WOS:000310400100001
PM 23077429
ER
PT S
AU Bailey, PE
Patki, T
Striemer, GM
Akoglu, A
Lowenthal, DK
Bradbury, P
Vaughn, M
Wang, LY
Goff, S
AF Bailey, Peter E.
Patki, Tapasya
Striemer, Gregory M.
Akoglu, Ali
Lowenthal, David K.
Bradbury, Peter
Vaughn, Matthew
Wang, Liya
Goff, Stephen
GP IEEE
TI Quantitative Trait Locus Analysis Using a Partitioned Linear Model on a
GPU Cluster
SO 2012 IEEE 26TH INTERNATIONAL PARALLEL AND DISTRIBUTED PROCESSING
SYMPOSIUM WORKSHOPS & PHD FORUM (IPDPSW)
SE IEEE International Symposium on Parallel and Distributed Processing
Workshops
LA English
DT Proceedings Paper
CT 26th IEEE International Parallel and Distributed Processing Symposium
(IPDPS) / Workshop on High Performance Data Intensive Computing
CY MAY 21-25, 2012
CL Shanghai Jiao Tong Univ, Shanghai, PEOPLES R CHINA
SP IEEE, IEEE Comp Soc Tech Comm Parallel Proc (TCPP), ACM SIGARCH, IEEE Comp Soc Tech Comm Comp Architecture, IEEE Comp Soc Tech Comm Distributed Proc (TCDP), IEEE Comp Soc
HO Shanghai Jiao Tong Univ
ID GRAPHICS PROCESSING UNITS
AB Quantitative Trait Locus (QTL) analysis is a statistical technique that allows understanding of the relationship between plant genotypes and the resultant continuous phenotypes in non-constant environments. This requires generation and processing of large datasets, which makes analysis challenging and slow. One approach, which is the subject of this paper, is Partitioned Linear Modeling (PLM), lends itself well to parallelization, both by MPI between nodes and by GPU within nodes. Large input datasets make this parallelization on the GPU non-trivial.
This paper compares several candidate integrated MPI/GPU parallel implementations of PLM on a cluster of GPUs for varied data sets. We compare them to a naive implementation and show that while that implementation is quite efficient on small data sets, when the data set is large, data-transfer overhead dominates an all-GPU implementation of PLM. We show that an MPI implementation that selectively uses the GPU for a relative minority of the code performs best and results in a 64% improvement over the MPI/CPU version. As a first implementation of PLM on GPUs, our work serves as a reminder that different GPU implementations are needed, depending on the size of the working set, and that data intensive applications are not necessarily trivially parallelizable with GPUs.
C1 [Bailey, Peter E.; Patki, Tapasya; Lowenthal, David K.] Univ Arizona, Dept Comp Sci, Tucson, AZ 85721 USA.
[Striemer, Gregory M.; Akoglu, Ali] Univ Arizona, Dept Elect & Comp Engn, Tucson, AZ 85721 USA.
[Bradbury, Peter] USDA, ARS, Washington, DC USA.
[Bradbury, Peter] Cornell Univ, Ithaca, NY 14853 USA.
[Vaughn, Matthew] Texas Adv Comp Ctr, Austin, TX USA.
[Wang, Liya] Cold Spring Harbor Lab, Cold Spring Harbor, NY USA.
[Goff, Stephen] IPlant Collaborat, Tucson, AZ USA.
RP Bailey, PE (reprint author), Univ Arizona, Dept Comp Sci, Tucson, AZ 85721 USA.
FU National Science Foundation Plant Cyberinfrastructure Program
[DBI-0735191]
FX This work was funded by a grant from the National Science Foundation
Plant Cyberinfrastructure Program (DBI-0735191).
NR 23
TC 0
Z9 0
U1 0
U2 2
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2164-7062
BN 978-0-7695-4676-6
J9 IEEE SYM PARA DISTR
PY 2012
BP 752
EP 760
DI 10.1109/IPDPSW.2012.93
PG 9
WC Computer Science, Theory & Methods
SC Computer Science
GA BCA26
UT WOS:000309409400093
ER
PT S
AU Chaney, RL
AF Chaney, Rufus L.
BE Sparks, DL
TI FOOD SAFETY ISSUES FOR MINERAL AND ORGANIC FERTILIZERS
SO ADVANCES IN AGRONOMY, VOL 117
SE Advances in Agronomy
LA English
DT Review; Book Chapter
ID ENVIRONMENTAL CADMIUM EXPOSURE; HEAVY-METAL CONTAMINANTS; EDIBLE
SUNFLOWER KERNELS; WHEAT TRITICUM-AESTIVUM; SOLANUM-TUBEROSUM L;
STATES-OF-AMERICA; OLD ORCHARD SOILS; LONG-TERM; SEWAGE-SLUDGE;
RISK-ASSESSMENT
AB Fertilizers and other soil amendments are required to maintain soil fertility, but some may be naturally rich in trace elements, or contaminated. As part of the overall consideration of using fertilizers and soil amendments, one should consider the levels of trace elements present in relation to soil, plant, and food-chain processes (precipitation, adsorption, chelation) which promote or alleviate trace element risks. These natural processes limit plant accumulation of nearly all elements to levels which would not cause harm to humans, livestock, wildlife, or soil organisms. Soils geologically rich or contaminated with Mo can harm ruminants, while those rich in Se may harm all plant consumers; Mo or Se should be applied only when needed. Manures from swine and poultry may be rich in Cu, Zn and/or As from feed additives. Crops except rice accumulate little As from soils, so soil ingestion is the basis for soil As risk except for rice. Pb risk is also through soil ingestion rather than plant uptake. Cd is accumulated by rice to levels which caused human disease (renal tubular dysfunction) where rice soils were contaminated by industrial discharges. Risk from Cd in rice is strongly affected by the high bioavailability of rice Cd. Consumption of similar amounts of Cd have not caused harm from other foods. Because phosphate fertilizers may contain high levels of Cd, and use of high Cd superphosphate in Australia caused significant increase in wheat and potato Cd levels, risk from long-term accumulation of phosphate fertilizer Cd (and other sources) must be controlled. Different control schemes are discussed.
C1 ARS, USDA, Environm Management & Byprod Utilizat Lab, BARC W, Beltsville, MD USA.
RP Chaney, RL (reprint author), ARS, USDA, Environm Management & Byprod Utilizat Lab, BARC W, Beltsville, MD USA.
NR 322
TC 19
Z9 20
U1 17
U2 86
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0065-2113
BN 978-0-12-394278-4
J9 ADV AGRON
JI Adv. Agron.
PY 2012
VL 117
BP 51
EP 116
DI 10.1016/B978-0-12-394278-4.00002-7
PG 66
WC Agronomy
SC Agriculture
GA BCI47
UT WOS:000310245500002
ER
PT S
AU He, SY
He, ZL
Yang, XE
Baligar, VC
AF He, Shanying
He, Zhenli
Yang, Xiaoe
Baligar, Virupax C.
BE Sparks, DL
TI MECHANISMS OF NICKEL UPTAKE AND HYPERACCUMULATION BY PLANTS AND
IMPLICATIONS FOR SOIL REMEDIATION
SO ADVANCES IN AGRONOMY, VOL 117
SE Advances in Agronomy
LA English
DT Review; Book Chapter
ID GROWTH-PROMOTING BACTERIA; HEAVY-METAL PHYTOEXTRACTION; ANTIOXIDATIVE
ENZYME-ACTIVITIES; MEMBRANE LIPID-COMPOSITION; TREE SEBERTIA-ACUMINATA;
BRASSICA-NAPUS L.; CV BAHIA SHOOTS; THLASPI-CAERULESCENS; CONTAMINATED
SOILS; INDIAN MUSTARD
AB Soil contamination by heavy metals like Ni was originally restricted to metalliferous soils but in modern time it has become a general problem due to increasing anthropogenic activities. Because of the characteristics of cost-effectiveness, environmental friendliness, and fewer side-effects, the development of plant based remediation technologies for the cleanup of Ni-contaminated soils has attracted much attention. Nickel is an essential micronutrient, but is toxic to plants at excessive levels. Some plant species can accumulate Ni in the shoots at a high concentration, these plants are called hyperaccumulators. In the past two decades, researchers have endeavored to understand the physiological and molecular mechanisms of Ni uptake, transport, and detoxification in the Ni-hyperaccumulator plants. This is the basis of creating ideal plants for phytoremediation through cell and genetic engineering technologies, which may subsequently improve phytoremediation efficiency for decontaminating Ni-contaminated soils. Both rhizosphere microorganisms and endophytes can play a role in phytoremediation. Optimizing plant and soil management practices, particularly the correction of soil pH and additions of amendments of exogenous chelates and fertilizers, can also enhance phytoremediation of Ni-contaminated soils. The primary objective of this review is to discuss the recent progresses in basic and applied research relevant to phytoremediation of Ni-contaminated soils.
C1 [He, Shanying; He, Zhenli] Univ Florida, Indian River Res & Educ Ctr, Inst Food & Agr Sci, Ft Pierce, FL USA.
[He, Shanying] Zhejiang Gongshang Univ, Coll Environm Sci & Engn, Hangzhou, Zhejiang, Peoples R China.
[Yang, Xiaoe] Zhejiang Univ, Minist Educ, Key Lab Environm Remediat & Ecosyst Hlth, Coll Environm & Resources Sci, Hangzhou 310003, Zhejiang, Peoples R China.
[Baligar, Virupax C.] ARS, USDA, Beltsville Agr Res Ctr, Beltsville, MD USA.
RP He, SY (reprint author), Univ Florida, Indian River Res & Educ Ctr, Inst Food & Agr Sci, Ft Pierce, FL USA.
RI He, Zhenli/R-1494-2016
OI He, Zhenli/0000-0001-7761-2070
NR 454
TC 7
Z9 7
U1 7
U2 114
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0065-2113
BN 978-0-12-394278-4
J9 ADV AGRON
JI Adv. Agron.
PY 2012
VL 117
BP 117
EP 189
DI 10.1016/B978-0-12-394278-4.00003-9
PG 73
WC Agronomy
SC Agriculture
GA BCI47
UT WOS:000310245500003
ER
PT B
AU Callaway, TR
Ricke, SC
AF Callaway, Todd R.
Ricke, Steven C.
BE Callaway, TR
Ricke, SC
TI Direct-Fed Microbials and Prebiotics for Animals Science and Mechanisms
of Action Preface
SO DIRECT-FED MICROBIALS AND PREBIOTICS FOR ANIMALS: SCIENCE AND MECHANISMS
OF ACTION
LA English
DT Editorial Material; Book Chapter
ID OBESITY
C1 [Callaway, Todd R.] USDA ARS, SPARC, Food & Feed Safety Res Unit, College Stn, TX 77845 USA.
[Ricke, Steven C.] Univ Arkansas, Ctr Food Safety, Fayetteville, AR 72704 USA.
[Ricke, Steven C.] Univ Arkansas, Dept Food Sci, Fayetteville, AR 72704 USA.
RP Callaway, TR (reprint author), USDA ARS, SPARC, Food & Feed Safety Res Unit, College Stn, TX 77845 USA.
EM todd.callaway@ars.usda.gov; sricke@uark.edu
NR 13
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-1310-3
PY 2012
BP VII
EP IX
D2 10.1007/978-1-4614-1311-0
PG 3
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BBG95
UT WOS:000306815400001
ER
PT B
AU Kogut, MH
Swaggerty, CL
AF Kogut, Michael H.
Swaggerty, Christina L.
BE Callaway, TR
Ricke, SC
TI Effects of Prebiotics and Probiotics on the Host Immune Response
SO DIRECT-FED MICROBIALS AND PREBIOTICS FOR ANIMALS: SCIENCE AND MECHANISMS
OF ACTION
LA English
DT Article; Book Chapter
ID CEREUS VAR. TOYOI; TOLL-LIKE RECEPTORS; ENTERICA SEROVAR TYPHIMURIUM;
ENTEROCOCCUS-FAECIUM STRAIN; BACILLUS-CEREUS; GENE-EXPRESSION; INNATE
IMMUNITY; GROWTH-PERFORMANCE; EIMERIA-ACERVULINA; BROILER-CHICKENS
AB The gastrointestinal (GI) tract is the largest interface between an animal's internal milieu and its exterior environment. As such, it forms a physical barrier between the two environments. However, the function of the GI tract in the wellbeing of an animal is more complex than this passive role. The GI tract not only regulates the selective entry of nutrients while keeping vigilant against pathogens, it is largely responsible for shaping the immune response. Through specialized receptors and other general mechanisms, the GI tract senses changes in its environment and actively responds to the changes. These responses allow the intestine to contribute to the defense against microbes as well as control and regulate the local immune response. In addition, the luminal microbial ecosystem is a highly complex community of primarily bacterial microbes that communicates extensively with itself and the host. The microbial community has major influences on the host, including effects on nutrient absorption, cancer, inflammation, host metabolism, barrier function, and gut function (neuromotor, immunological, vascular) among others. Regulation of the immune response is the basis for the use of probiotics and prebiotics reviewed in this chapter.
C1 [Kogut, Michael H.; Swaggerty, Christina L.] ARS, USDA, College Stn, TX USA.
RP Kogut, MH (reprint author), ARS, USDA, College Stn, TX USA.
EM Michael.kogut@ars.usda.gov
NR 57
TC 4
Z9 4
U1 0
U2 1
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-1310-3
PY 2012
BP 61
EP 72
DI 10.1007/978-1-4614-1311-0_5
D2 10.1007/978-1-4614-1311-0
PG 12
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BBG95
UT WOS:000306815400006
ER
PT B
AU Callaway, TR
Edrington, TS
Poole, TL
Nisbet, DJ
AF Callaway, Todd R.
Edrington, Tom S.
Poole, T. L.
Nisbet, D. J.
BE Callaway, TR
Ricke, SC
TI Current Status of Practical Applications: Probiotics in Dairy Cattle
SO DIRECT-FED MICROBIALS AND PREBIOTICS FOR ANIMALS: SCIENCE AND MECHANISMS
OF ACTION
LA English
DT Article; Book Chapter
ID ESCHERICHIA-COLI O157-H7; DIRECT-FED MICROBIALS; ORYZAE FERMENTATION
EXTRACT; LACTIC-ACID BACTERIA; BEEF FEEDLOT CATTLE; ASPERGILLUS-ORYZAE;
MILK-PRODUCTION; SACCHAROMYCES-CEREVISIAE; RUMINAL FERMENTATION;
IN-VITRO
AB The gastrointestinal microbial population of dairy cattle is dense and diverse and can be utilized to reduce pathogenic bacterial populations as well as improve animal productivity and environmental effects. Because of the nature of the dairy industry, probiotic products have been widely used to enhance milk production and the feed efficiency. The individual efficacy of probiotics in dairy cattle is due to specific microbial ecological factors within the gut of the food animal and its native microflora that alter the competitive pressures of the gut. This chapter explores the ecology behind the efficacy of probiotic products against food-borne pathogens that inhabit food animals.
C1 [Callaway, Todd R.; Edrington, Tom S.; Poole, T. L.; Nisbet, D. J.] USDA ARS, Food & Feed Safety Res Unit, College Stn, TX USA.
RP Callaway, TR (reprint author), USDA ARS, Food & Feed Safety Res Unit, College Stn, TX USA.
EM todd.callaway@ars.usda.gov
NR 107
TC 2
Z9 2
U1 2
U2 4
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-1310-3
PY 2012
BP 121
EP 135
DI 10.1007/978-1-4614-1311-0_8
D2 10.1007/978-1-4614-1311-0
PG 15
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BBG95
UT WOS:000306815400009
ER
PT B
AU Burr, JJ
Clement, AR
Stellwag, EJ
Burr, GS
Ricke, SC
AF Burr, Julie J.
Clement, Ashley R.
Stellwag, Edmund J.
Burr, Gary S.
Ricke, Steven C.
BE Callaway, TR
Ricke, SC
TI Characteristics and Modification of the Intestinal Tract Microbiota of
the Channel Catfish Ictalurus punctatus
SO DIRECT-FED MICROBIALS AND PREBIOTICS FOR ANIMALS: SCIENCE AND MECHANISMS
OF ACTION
LA English
DT Article; Book Chapter
ID TROUT ONCORHYNCHUS-MYKISS; FRESH-WATER FISH; OBLIGATE
ANAEROBIC-BACTERIA; LACTIC-ACID BACTERIA; RUMINAL CELLULOLYTIC BACTERIA;
CARP CTENOPHARYNGODON-IDELLA; SUBSTRATE-LIMITED CONDITIONS; DRUM
SCIAENOPS-OCELLATUS; MICROSCALE BATCH CULTURE; SALVELINUS-ALPINUS L.
AB Catfish is the leading commercial aquaculture enterprise in the United States, and many of the issues that have been important for other mass-produced food animals have become areas of research focus for potential improvement in the growth performance and health of catfish. A critical component that can influence both the health and nutrition of catfish is the intestinal tract. The intestinal tract, in addition to being the point of origin for digestion and absorption of nutrients derived from consumed diets, harbors an indigenous microflora that can interact with the host. The composition and role of the intestinal microbial communities in fishes remain poorly understood. To understand the effects of the entire microbial community on the host, additional studies and improved isolation methods are recommended. Along with the lack of knowledge about the composition of the community, little is known about the role of these microorganisms in the intestinal tract. An increased understanding of the intestinal microflora in catfish has potential for manipulation or alteration to improve disease resistance and growth performance, allowing the channel catfish to consume diets made with less expensive ingredients, such as crop residues, already fairly cheap. Recent aquaculture feed trials using prebiotics and probiotics report enhanced physiological and immune responses that contribute to improvements in aquaculture health. These trials are reviewed.
C1 [Clement, Ashley R.; Ricke, Steven C.] Univ Arkansas, Dept Food Sci, Div Agr, Ctr Food Safety, Fayetteville, AR 72703 USA.
[Burr, Julie J.; Stellwag, Edmund J.] E Carolina Univ, Dept Biol, Greenville, NC USA.
[Burr, Gary S.] USDA, ARS Natl Cold Water Marine Aquaculture Ctr, Franklin, ME USA.
RP Ricke, SC (reprint author), Univ Arkansas, Dept Food Sci, Div Agr, Ctr Food Safety, Fayetteville, AR 72703 USA.
EM sricke@uark.edu
NR 137
TC 4
Z9 4
U1 0
U2 2
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-1310-3
PY 2012
BP 163
EP 188
DI 10.1007/978-1-4614-1311-0_11
D2 10.1007/978-1-4614-1311-0
PG 26
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BBG95
UT WOS:000306815400012
ER
PT S
AU Lin, LG
Sun, YX
AF Lin, Ligen
Sun, Yuxiang
BE Kojima, M
Kangawa, K
TI Thermogenic Characterization of Ghrelin Receptor Null Mice
SO GHRELIN
SE Methods in Enzymology
LA English
DT Review; Book Chapter
ID BROWN ADIPOSE-TISSUE; HORMONE SECRETAGOGUE RECEPTOR; INSULIN
SENSITIVITY; ENERGY-EXPENDITURE; GHS-R; ADIPOCYTES; HUMANS; STIMULATION;
RELEASE; OBESITY
AB Ghrelin is the only known circulating orexigenic hormone that increases food intake and promotes adiposity, and these physiological functions of ghrelin are mediated through its receptor growth hormone secretagogue receptor (GHS-R). Ghrelin/GHS-R signaling plays a crucial role in energy homeostasis. Old GHS-R null mice exhibit a healthy phenotype-lean and insulin sensitive. Interestingly, the GHS-R null mice have increased energy expenditure, yet exhibit no difference in food intake or locomotor activity compared to wild-type mice. We have found that GHS-R is expressed in brown adipose tissue (BAT) of old mice. Ablation of GHS-R attenuates age-associated decline in thermogenesis, exhibiting a higher core body temperature. Indeed, the BAT of old GHS-R null mice reveals enhanced thermogenic capacity, which is consistent with the gene expression profile of increases in glucose/lipid uptake, lipogenesis, and lipolysis in BAT. The data collectively suggest that ghrelin/GHS-R signaling has important roles in thermogenesis. The recent discovery that BAT also regulates energy homeostasis in adult humans makes the BAT a new antiobesity target. Understanding the roles and molecular mechanisms of ghrelin/GHS-R in thermogenesis is of great significance. GHS-R antagonists might be a novel means of combating obesity by shifting adiposity balance from obesogenesis to thermogenesis.
C1 [Lin, Ligen; Sun, Yuxiang] Baylor Coll Med, Dept Pediat, USDA ARS, Childrens Nutr Res Ctr, Houston, TX 77030 USA.
RP Sun, YX (reprint author), Baylor Coll Med, Dept Pediat, USDA ARS, Childrens Nutr Res Ctr, Houston, TX 77030 USA.
EM yuxiangs@bcm.edu
FU NIA NIH HHS [1R03AG029641-01]; NIDDK NIH HHS [P30DK079638]
NR 35
TC 2
Z9 2
U1 0
U2 0
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0076-6879
BN 978-0-12-381272-8
J9 METHOD ENZYMOL
JI Methods Enzymol.
PY 2012
VL 514
BP 355
EP 370
DI 10.1016/B978-0-12-381272-8.00022-2
PG 16
WC Biochemical Research Methods; Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BCI39
UT WOS:000310244000022
PM 22975064
ER
PT J
AU Potter, BE
AF Potter, Brian E.
TI Atmospheric interactions with wildland fire behaviour - I. Basic surface
interactions, vertical profiles and synoptic structures
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Review
DE atmospheric moisture; fire weather; frontal systems; review; solar
radiation; stability; wind
ID DISCRETE FUEL-ELEMENTS; WIND-AIDED FIRESPREAD; AUSTRALIAN FIRES; DRIVEN
FIRES; FOREST-FIRES; SPREAD; MODEL; MOISTURE; METEOROLOGY; CALIFORNIA
AB This paper is the first of two reviewing scientific literature from 100 years of research addressing interactions between the atmosphere and fire behaviour. These papers consider research on the interactions between the fuels burning at any instant and the atmosphere, and the interactions between the atmosphere and those fuels that will eventually burn in a given fire. This first paper reviews the progression from the surface atmospheric properties of temperature, humidity and wind to horizontal and vertical synoptic structures and ends with vertical atmospheric profiles. (The companion paper addresses plume dynamics and vortices.) The review reveals several unanswered questions, as well as findings from previous studies that appear forgotten in current research and concludes with suggestions for areas of future research.
C1 US Forest Serv, Pacific NW Fire Sci Lab, USDA, Seattle, WA 98103 USA.
RP Potter, BE (reprint author), US Forest Serv, Pacific NW Fire Sci Lab, USDA, 400 N 34th St,Suite 201, Seattle, WA 98103 USA.
EM bpotter@fs.fed.us
NR 122
TC 17
Z9 17
U1 5
U2 28
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 7
BP 779
EP 801
DI 10.1071/WF11128
PG 23
WC Forestry
SC Forestry
GA 023AD
UT WOS:000310004400001
ER
PT J
AU Potter, BE
AF Potter, Brian E.
TI Atmospheric interactions with wildland fire behaviour - II. Plume and
vortex dynamics
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Review
DE convection; fire weather; review; whirls; vortices
ID RELEASED MOISTURE; BUOYANT PLUMES; SMOKE; CONVECTION; VORTICES; IMAGERY;
MODEL
AB This paper is the second of two reviewing scientific literature from 100 years of research addressing interactions between the atmosphere and fire behaviour. These papers consider research on the interactions between the fuels burning at any instant and the atmosphere, and the interactions between the atmosphere and those fuels that will eventually burn in a given fire. The first paper reviews the progression from the surface atmospheric properties of temperature, humidity and wind to horizontal and vertical synoptic structures and ends with vertical atmospheric profiles. This second paper addresses plume dynamics and vortices. The review presents several questions and concludes with suggestions for areas of future research.
C1 US Forest Serv, Pacific NW Fire Sci Lab, USDA, Seattle, WA 98103 USA.
RP Potter, BE (reprint author), US Forest Serv, Pacific NW Fire Sci Lab, USDA, 400 N 34th St,Suite 201, Seattle, WA 98103 USA.
EM bpotter@fs.fed.us
NR 66
TC 10
Z9 10
U1 1
U2 21
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 7
BP 802
EP 817
DI 10.1071/WF11129
PG 16
WC Forestry
SC Forestry
GA 023AD
UT WOS:000310004400002
ER
PT J
AU Samsonov, YN
Ivanov, VA
McRae, DJ
Baker, SP
AF Samsonov, Y. N.
Ivanov, V. A.
McRae, D. J.
Baker, S. P.
TI Chemical and dispersal characteristics of particulate emissions from
forest fires in Siberia
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE black carbon; chemical composition; elemental carbon; organic carbon;
smoke particulate
ID BOREAL FOREST; TRACE-ELEMENTS; AEROSOLS; BIOMASS; ALBEDO
AB Approximately 20 experimental fires were conducted on forest plots of 1-4 ha each in 2000-07 in two types of boreal forests in central Siberia, and 18 on 6 x 12-m plots in 2008-10. These experiments were designed to mimic wildfires under similar burning conditions. The fires were conducted in prescribed conditions including full documentation on pre-fire weather, pre-fire and post-fire forest fuels, fire intensities, and other biological, physical and chemical parameters. The amount of particulate matter emitted during a typical fire averaged 0.6 t ha(-1) and ranged within 0.2-1.0 t ha(-1) depending on burning conditions. Particulates accounted for similar to 1-7% of the total mass of the consumed biomass during a typical forest fire (10-30 t ha(-1) based on our data from 2000-07). Most of the particulate matter consists of organic substances, 77% on average, with a range of 70-90%. Elemental carbon averaged 8%, with a range of 2-18%. Trace element compositions and amounts of particulates indicate that there was no actual difference in the element emissions sampled from the fires conducted in the two forest types (6-8% in larch forest and 8% in pine forest). Most of the particulate matter, 90-95%, consists of submicrometre and near-micrometre particles similar to 0.1-5 mu m in diameter.
C1 [Samsonov, Y. N.] Russian Acad Sci, Inst Chem Kinet & Combust, Novosibirsk 630090, Russia.
[Ivanov, V. A.] Siberian State Technol Univ, Forest Inst, Krasnoyarsk 660036, Russia.
[McRae, D. J.] Canadian Forest Serv, Sault Ste Marie, ON P6A 2E5, Canada.
[Baker, S. P.] US Forest Serv, Rocky Mt Res Stn, USDA, Missoula, MT 59807 USA.
RP Samsonov, YN (reprint author), Russian Acad Sci, Inst Chem Kinet & Combust, Novosibirsk 630090, Russia.
EM samsonov@kinetics.nsc.ru
FU National Aeronautics and Space Administration (NASA) Land-Cover Land-Use
Change program; USDA Forest Service; Natural Resources Canada, Canadian
Forest Service; Civilian Research and Development Foundation (CRDF);
International Science and Technology Center [3695]; Russian-based
Research Foundation for Basic Research [08-05-00083]
FX The authors thank S. G. Conard and G. A. Ivanova for participation in
designing and organising the fire experiments of which this research was
a part. The authors gratefully acknowledge financial support for this
research from the National Aeronautics and Space Administration (NASA)
Land-Cover Land-Use Change program; USDA Forest Service; Natural
Resources Canada, Canadian Forest Service; and the Civilian Research and
Development Foundation (CRDF). The International Science and Technology
Center (project 3695) and the Russian-based Research Foundation for
Basic Research (grant 08-05-00083) provided additional financial
support.
NR 41
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U1 1
U2 10
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
EI 1448-5516
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 7
BP 818
EP 827
DI 10.1071/WF11038
PG 10
WC Forestry
SC Forestry
GA 023AD
UT WOS:000310004400003
ER
PT J
AU Loudermilk, EL
O'Brien, JJ
Mitchell, RJ
Cropper, WP
Hiers, JK
Grunwald, S
Grego, J
Fernandez-Diaz, JC
AF Loudermilk, E. Louise
O'Brien, Joseph J.
Mitchell, Robert J.
Cropper, Wendell P., Jr.
Hiers, J. Kevin
Grunwald, Sabine
Grego, John
Fernandez-Diaz, Juan C.
TI Linking complex forest fuel structure and fire behaviour at fine scales
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE fuel heterogeneity; IR imagery; LIDAR; longleaf pine; regression tree;
savanna
ID LONGLEAF PINE FORESTS; LIDAR; CLASSIFICATION; VALIDATION; ECOSYSTEMS;
PALUSTRIS; MODELS
AB Improved fire management of savannas and open woodlands requires better understanding of the fundamental connection between fuel heterogeneity, variation in fire behaviour and the influence of fire variation on vegetation feedbacks. In this study, we introduce a novel approach to predicting fire behaviour at the submetre scale, including measurements of forest understorey fuels using ground-based LIDAR (light detection and ranging) coupled with infrared thermography for recording precise fire temperatures. We used ensemble classification and regression trees to examine the relationships between fuel characteristics and fire temperature dynamics. Fire behaviour was best predicted by characterising fuelbed heterogeneity and continuity across multiple plots of similar fire intensity, where impacts from plot-to-plot variation in fuel, fire and weather did not overwhelm the effects of fuels. The individual plot-level results revealed the significance of specific fuel types (e.g. bare soil, pine leaf litter) as well as the spatial configuration of fire. This was the first known study to link the importance of fuelbed continuity and the heterogeneity associated with fuel types to fire behaviour at metre to submetre scales and provides the next step in understanding the complex responses of vegetation to fire behaviour.
C1 [Loudermilk, E. Louise] Univ Florida, Sch Nat Resources & Environm, Gainesville, FL 32611 USA.
[O'Brien, Joseph J.] US Forest Serv, USDA, Ctr Forest Disturbance Sci, Forestry Sci Lab, Athens, GA 30602 USA.
[Mitchell, Robert J.] Joseph W Jones Ecol Res Ctr Ichauway, Newton, GA 39870 USA.
[Cropper, Wendell P., Jr.] Univ Florida, Sch Forest Resources & Conservat, Gainesville, FL 32611 USA.
[Hiers, J. Kevin] Nat Resource Branch, Eglin AFB, Niceville, FL 32578 USA.
[Grunwald, Sabine] Univ Florida, Soil & Water Sci Dept, Gainesville, FL 32611 USA.
[Grego, John] Univ S Carolina, Dept Stat, Columbia, SC 29208 USA.
[Fernandez-Diaz, Juan C.] Univ Florida, Geosensing Engn & Mapping Ctr, Gainesville, FL 32611 USA.
RP Loudermilk, EL (reprint author), Portland State Univ, Dept Environm Sci & Management, POB 751, Portland, OR 97207 USA.
EM louise.loudermilk@gmail.com
RI Cropper, Jr., Wendell/E-5952-2010
OI Cropper, Jr., Wendell/0000-0001-7851-7382
FU School of Natural Resources and Environment; School of Forest Resources
and Conservation at the University of Florida; Joseph W. Jones
Ecological Research Center
FX We thank the School of Natural Resources and Environment and the School
of Forest Resources and Conservation at the University of Florida for
providing logistic and financial support throughout this research. We
thank the Joseph W. Jones Ecological Research Center for support during
research development, field work and final stages of this work. The
Ordway-Swisher Biological Station, Melrose, FL, was important for the
pilot stage of this work. We thank the USDA Forest Service for research
development and logistical support. We thank the National Center for
Airborne Laser Mapping at the University of Florida for providing the
ground-LIDAR instrumentation (i.e. MTLS) and engineering expertise, with
special thanks to K. Clint Slatton.
NR 40
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U1 2
U2 29
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 7
BP 882
EP 893
DI 10.1071/WF10116
PG 12
WC Forestry
SC Forestry
GA 023AD
UT WOS:000310004400008
ER
PT J
AU Kreye, JK
Varner, JM
Knapp, EE
AF Kreye, Jesse K.
Varner, J. Morgan
Knapp, Eric E.
TI Moisture desorption in mechanically masticated fuels: effects of
particle fracturing and fuelbed compaction
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE Arctostaphylos; Ceanothus; mechanical fuel treatment; moisture dynamics;
timelag
ID FIRE BEHAVIOR; REDUCTION TREATMENTS; DRYING RATES; FOREST; SOIL; OREGON;
COMMUNITIES; MANAGEMENT; CALIFORNIA; LITTER
AB Mechanical mastication is increasingly used as a wildland fuel treatment, reducing standing trees and shrubs to compacted fuelbeds of fractured woody fuels. One major shortcoming in our understanding of these fuelbeds is how particle fracturing influences moisture gain or loss, a primary determinant of fire behaviour. To better understand fuel moisture dynamics, we measured particle and fuelbed drying rates of masticated Arctostaphylos manzanita and Ceanothus velutinus shrubs, common targets of mastication in fire-prone western USA ecosystems. Drying rates of intact and fractured particles did not differ when desorbing at the fuelbed surface, but these particles did dry more rapidly than underlying fuelbeds. Average response times of 10-h woody particles at the fuelbed surfaces ranged from 16 to 21 h, whereas response times of fuelbeds (composed of 1-h and 10-h particles) were 40 to 69 h. Response times did not differ between fuelbeds composed of fractured woody particles and fuelbeds composed of intact particles (P = 0.258). Particle fracturing as a result of mastication does not affect the drying rate, but the longer-than-expected response times of particles within fuelbeds underscores the needs to better understand fuel moisture dynamics in these increasingly common fuels.
C1 [Knapp, Eric E.] US Forest Serv, USDA, Pacific SW Res Stn, Redding, CA 96002 USA.
[Kreye, Jesse K.; Varner, J. Morgan] Humboldt State Univ, Dept Forestry & Wildland Resources, Wildland Fire Lab, Arcata, CA 95521 USA.
RP Kreye, JK (reprint author), Univ Florida, Sch Forest Resources & Conservat, Newins Ziegler Hall, Gainesville, FL 32611 USA.
EM jkreye@ufl.edu
FU Joint Fire Science Program [05-2-1-20]; USDA McIntire-Stennis Forestry
Research Program
FX Funding for this project was provided by the Joint Fire Science Program
(Project 05-2-1-20) and the USDA McIntire-Stennis Forestry Research
Program. M. Hennessey, M. Kreye, T. Kinnard and J. Kane assisted with
field and laboratory work. C. Keyes, B. Graham and J. Kane provided
helpful input on earlier versions of this manuscript. Two anonymous
reviewers and an Associate Editor provided very valuable comments and
suggestions on this manuscript.
NR 47
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U1 2
U2 11
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 7
BP 894
EP 904
DI 10.1071/WF11077
PG 11
WC Forestry
SC Forestry
GA 023AD
UT WOS:000310004400009
ER
PT J
AU Nyakatawa, EZ
Mays, DA
Way, TR
Watts, DB
Torbert, HA
Smith, DR
AF Nyakatawa, E. Z.
Mays, D. A.
Way, T. R.
Watts, D. B.
Torbert, H. A.
Smith, D. R.
TI Soil Carbon Dioxide Fluxes in Conventional and Conservation Tillage Corn
Production Systems Receiving Poultry Litter and Inorganic Fertilizer
SO JOURNAL OF SUSTAINABLE AGRICULTURE
LA English
DT Article
DE carbon dioxide flux; conservation tillage; greenhouse gases; no-tillage;
poultry litter
ID NITROUS-OXIDE EMISSIONS; GREENHOUSE-GAS EMISSIONS; CO2 FLUX; PIG SLURRY;
CROPPING SYSTEMS; LOAMY SAND; LAND-USE; MANURE; EFFLUX; RESPIRATION
AB Soil management practices can alter the natural balance at the soil-plant-atmosphere ecosystem interface, which can significantly affect the environment. This study compared CO2 fluxes in conventional tillage (CT) and no-tillage (NT) corn (Zea mays L.) production systems receiving poultry litter (PL) and ammonium nitrate (AN) fertilizers on a Decatur silt loam soil in the Tennessee Valley region of North Alabama from Spring 2008 to Fall 2009. Soil CO2 flux in CT plots (9.5 kg CO2 ha(-1) day(-1)) was significantly greater than that in NT plots (4.9 kg CO2 ha(-1) day(-1) in summer. Soil CO2 fluxes were lowest in fall where CT plots had a mean soil CO2 emission of 0.8 kg CO2 ha(-1) day(-1), while plots under NT and grass fallow system were sinks of CO2 with fluxes -0.6 and -1.0 kg CO2 ha(-1) day(-1), respectively. Mean soil CO2 flux averaged over seasons in NT plots was 36% lower than that in CT plots. Grass fallow plots were net sinks of CO2 with a mean CO2 flux of -0.4 kg CO2 ha(-1) day(-1). Our study showed that application of PL or AN fertilizer in NT systems can significantly reduce soil CO2 emissions compared to CT systems in corn production.
C1 [Nyakatawa, E. Z.; Mays, D. A.] Alabama A&M Univ, Dept Nat Resources & Environm Sci, Normal, AL 35762 USA.
[Way, T. R.; Watts, D. B.; Torbert, H. A.] USDA ARS, Natl Soil Dynam Lab, Auburn, AL USA.
[Smith, D. R.] USDA ARS MWA, Natl Soil Eros Res Lab, W Lafayette, IN USA.
RP Nyakatawa, EZ (reprint author), Alabama A&M Univ, Dept Nat Resources & Environm Sci, 4900 Meridian St,POB 1208, Normal, AL 35762 USA.
EM ermson.nyakatawa@aamu.edu
NR 63
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U1 2
U2 24
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1044-0046
J9 J SUSTAIN AGR
JI J. Sustain. Agric.
PY 2012
VL 36
IS 8
BP 873
EP 892
DI 10.1080/10440046.2012.695330
PG 20
WC Agriculture, Multidisciplinary
SC Agriculture
GA 024YP
UT WOS:000310148200003
ER
PT S
AU Eirin-Lopez, JM
Rebordinos, L
Rooney, AP
Rozas, J
AF Eirin-Lopez, J. M.
Rebordinos, L.
Rooney, A. P.
Rozas, J.
BE GarridoRamos, MA
TI The Birth-and-Death Evolution of Multigene Families Revisited
SO REPETITIVE DNA
SE Genome Dynamics
LA English
DT Article; Book Chapter
ID 5S RIBOSOMAL DNA; 12 DROSOPHILA-GENOMES; FATTY-ACYL REDUCTASE;
PHYLOGENETIC ANALYSIS; GENE FAMILIES; RNA GENES; SEQUENCE
CHARACTERIZATION; CHROMOSOMAL LOCATION; CRASSOSTREA-ANGULATA; MOLECULAR
EVOLUTION
AB For quite some time, scientists have wondered how multigene families come into existence. Over the last several decades, a number of genomic and evolutionary mechanisms have been discovered that shape the evolution, structure and organization of multigene families. While gene duplication represents the core process, other phenomena such as pseudogene formation, gene loss, recombination and natural selection have been found to act in varying degrees to shape the evolution of gene families. How these forces influence the fate of gene duplicates has ultimately led molecular evolutionary biologists to ask the question: How and why do some duplicates gain new functions, whereas others deteriorate into pseudogenes or even get deleted from the genome? What ultimately lies at the heart of this question is the desire to understand how multigene families originate and diversify. The birth-and-death model of multigene family evolution provides a framework to answer this question. However, the growing availability of molecular data has revealed a much more complex scenario in which the birth-and-death process interacts with different mechanisms, leading to evolutionary novelty that can be exploited by a species as means for adaptation to various selective challenges. Here we provide an up-to-date review into the role of the birth-and-death model and the relevance of its interaction with forces such as genomic drift, selection and concerted evolution in generating and driving the evolution of different archetypal multigene families. We discuss the scientific evidence supporting the notion of birth-and-death as the major mechanism guiding the long-term evolution of multigene families. Copyright (C) 2012 S. Karger AG, Basel
C1 [Eirin-Lopez, J. M.] Univ A Coruna, Fac Ciencias, Dept Biol Celular & Mol, CHROMEVOL XENOMAR Grp, ES-15071 La Coruna, Spain.
[Rebordinos, L.] Univ Cadiz, Fac Ciencias Mar & Ambientales, Area Genet, Cadiz, Spain.
[Rozas, J.] Univ Barcelona, Dept Genet, Barcelona, Spain.
[Rozas, J.] Univ Barcelona, Inst Recerca Biodiversitat IRBio, Barcelona, Spain.
[Rooney, A. P.] ARS, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL USA.
RP Eirin-Lopez, JM (reprint author), Univ A Coruna, Fac Ciencias, Dept Biol Celular & Mol, CHROMEVOL XENOMAR Grp, Campus A Zapateira S-N, ES-15071 La Coruna, Spain.
EM jeirin@udc.es
RI Rozas, Julio/A-1733-2009; Eirin-Lopez, Jose Maria/A-5618-2008;
REBORDINOS, LAUREANA/K-1327-2014
OI Rozas, Julio/0000-0002-6839-9148; Eirin-Lopez, Jose
Maria/0000-0002-8041-9770; REBORDINOS, LAUREANA/0000-0001-6255-9449
NR 66
TC 26
Z9 26
U1 0
U2 6
PU KARGER
PI BASEL
PA POSTFACH, CH-4009 BASEL, SWITZERLAND
SN 1660-9263
BN 978-3-318-02149-3
J9 GENOME DYNAM
JI Genome Dyn.
PY 2012
VL 7
BP 170
EP 196
PG 27
WC Genetics & Heredity
SC Genetics & Heredity
GA BCI65
UT WOS:000310249100011
PM 22759819
ER
PT S
AU Wilson, AD
AF Wilson, Alphus Dan
BE Uzunboylu, H
TI Theoretical and practical considerations for teaching diagnostic
electronic-nose technologies to clinical laboratory technicians
SO WORLD CONFERENCE ON LEARNING, TEACHING & ADMINISTRATION - 2011
SE Procedia Social and Behavioral Sciences
LA English
DT Proceedings Paper
CT 2nd World Conference on Learning, Teaching and Educational Leadership
(WCLTA)
CY OCT 28-30, 2011
CL Bahcesehir Univ, Istanbul, TURKEY
HO Bahcesehir Univ
DE Analytical instrument operation; Clinical technicians; E-nose methods;
Teaching research methods; Science education
ID MINUTE PRECEPTOR; EDUCATION; IMPROVE; STRATEGIES; CHEMISTRY; TEACHERS;
MODEL; NEED
AB The rapid development of new electronic technologies and instruments, utilized to perform many current clinical operations in the biomedical field, is changing the way medical health care is delivered to patients. The majority of test results from laboratory analyses, performed with these analytical instruments often prior to clinical examinations, are frequently used for management decisions pertaining to patient care rather than as aids to diagnosis. The introduction of novel, improved electronic methods and portable tools for diagnosing diseases and for administering treatments has required continuous retraining of laboratory technicians for routine clinical operations and point-of-care testing. Continuous education and competency of clinical laboratory technicians in the proper use of these new healthcare tools, such as electronic-nose (e-nose) devices, is required to obtain the highest quality information possible for management decisions and to develop efficient treatments for patients. E-nose devices often provide more accurate and timely information than conventional chemical methods. Electronic-nose devices of various types and operational technologies are beginning to be used at increasing frequency in hospitals and clinical settings because of the capability of these instruments to provide rapid, accurate information of a patient's physiological state and health in real-time, eliminating the need for time-consuming chemical tests. E-nose devices are ideal instruments for the detection and diagnosis of disease and for the rapid recognition (sensing) of chemical-bioindicator compounds as indicators of disease within human fluid and tissue samples sent to diagnostic clinical laboratories for analysis. The proper training of technicians in the effective use of e-nose instruments for healthcare applications requires thorough understanding of the theoretical workings of e-nose devices and practical knowledge of operational methodologies that must be followed in order to effectively use e-nose devices to obtain the essential patient information required by medical doctors to make accurate diagnoses and administer rapid effective treatments. This paper provides a review of the most important theoretical and practical considerations to include in the development of training courses to teach clinical laboratory technicians how to properly operate e-nose devices for effective clinical analyses. (C) 2011 Published by Elsevier Ltd. Selection and/or peer-review under responsibility of Prof. Huseyin Uzunboylu.
C1 [Wilson, Alphus Dan] US Forest Serv, USDA, So Hardwoods Lab, Stoneville, MS 38776 USA.
RI Wilson, Alphus/Q-2137-2015
OI Wilson, Alphus/0000-0003-2352-5232
NR 37
TC 3
Z9 3
U1 0
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1877-0428
J9 PROCD SOC BEHV
PY 2012
VL 31
BP 262
EP 274
DI 10.1016/j.sbspro.2011.12.053
PG 13
WC Education & Educational Research
SC Education & Educational Research
GA BCB35
UT WOS:000309596700048
ER
PT S
AU Oliver, RP
Friesen, TL
Faris, JD
Solomon, PS
AF Oliver, Richard P.
Friesen, Timothy L.
Faris, Justin D.
Solomon, Peter S.
BE VanAlfen, NK
Leach, JE
Lindow, S
TI Stagonospora nodorum: From Pathology to Genomics and Host Resistance
SO ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 50
SE Annual Review of Phytopathology
LA English
DT Review; Book Chapter
DE Phaeosphaeria; Septoria; Leptosphaeria; glume; Dothideomycetes;
Pleosporales; necrotroph
ID PYRENOPHORA-TRITICI-REPENTIS; PATHOGEN PHAEOSPHAERIA-NODORUM;
EFFECTOR-TRIGGERED SUSCEPTIBILITY; HORIZONTAL GENE-TRANSFER;
NECROSIS-INDUCING TOXIN; INDUCED POINT MUTATIONS; G-ALPHA SUBUNIT; PTR
TOXA; TAN SPOT; SELECTIVE TOXIN
AB Stagonospora nodorum is a major necrotrophic pathogen of wheat that causes the diseases S. nodorum leaf and glume blotch. A series of tools and resources, including functional genomics, a genome sequence, proteomics and metabolomics, host-mapping populations, and a worldwide collection of isolates, have enabled the dissection of pathogenicity mechanisms. Metabolic and signaling genes required for pathogenicity have been defined. Interaction with the host is dominated by interplay of fungal effectors that induce necrosis on wheat lines carrying specific sensitivity loci. As such, the pathogen has emerged as a model for the Pleosporales group of pathogens.
C1 [Oliver, Richard P.] Curtin Univ, Australian Ctr Necrotroph Fungal Pathogens, Perth, WA 6845, Australia.
[Friesen, Timothy L.; Faris, Justin D.] ARS, USDA, Cereal Crops Res Unit, Fargo, ND 58102 USA.
[Solomon, Peter S.] Australian Natl Univ, Res Sch Biol, Canberra, ACT 0200, Australia.
RP Oliver, RP (reprint author), Curtin Univ, Australian Ctr Necrotroph Fungal Pathogens, Perth, WA 6845, Australia.
EM richard.oliver@curtin.edu.au
RI Solomon, Peter/C-9301-2009
OI Solomon, Peter/0000-0002-5130-7307
NR 131
TC 52
Z9 52
U1 3
U2 55
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 0066-4286
BN 978-0-8243-1350-0
J9 ANNU REV PHYTOPATHOL
JI Annu. Rev. Phytopathol.
PY 2012
VL 50
BP 23
EP 43
DI 10.1146/annurev-phyto-081211-173019
PG 21
WC Plant Sciences
SC Plant Sciences
GA BCG17
UT WOS:000310143200003
PM 22559071
ER
PT S
AU Mazzola, M
Manici, LM
AF Mazzola, Mark
Manici, Luisa M.
BE VanAlfen, NK
Leach, JE
Lindow, S
TI Apple Replant Disease: Role of Microbial Ecology in Cause and Control
SO ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 50
SE Annual Review of Phytopathology
LA English
DT Review; Book Chapter
DE soil suppressiveness; organic amendments; Brassicaceae seed meal;
biofumigation; managing soil biology; beneficial microorganisms
ID NAPUS SEED MEAL; RHIZOCTONIA DAMPING-OFF; BACTERIAL COMMUNITY
COMPOSITION; SOIL FUMIGATION; GREEN MANURES; PRATYLENCHUS-PENETRANS;
MANAGEMENT STRATEGIES; PREPLANT FUMIGATION; PYTHIUM-IRREGULARE; RESIDENT
BACTERIA
AB Replant disease of apple is common to all major apple growing regions of the world. Difficulties in defining disease etiology, which can be exacerbated by abiotic factors, have limited progress toward developing alternatives to soil fumigation for disease control. However, the preponderance of data derived from studies of orchard soil biology employing multidisciplinary approaches has defined a complex of pathogens/parasites as causal agents of the disease. Approaches to manipulate microbial resources endemic to the orchard soil system have been proposed to induce a state of general soil suppressiveness to replant disease. Such a long-term strategy may benefit the existing orchard through extending the period of economic viability and reduce overall disease pressure to which young trees are exposed during establishment of successive plantings on the site. Alternatively, more near-term methods have been devised to achieve specific quantitative and qualitative changes in soil biology during the period of orchard renovation that may lead to effective disease suppression.
C1 [Mazzola, Mark] ARS, Tree Fruit Res Lab, USDA, Wenatchee, WA 98801 USA.
[Manici, Luisa M.] CRA, Res Ctr Ind Crops, I-40129 Bologna, Italy.
RP Mazzola, M (reprint author), ARS, Tree Fruit Res Lab, USDA, Wenatchee, WA 98801 USA.
EM mark.mazzola@ars.usda.gov; luisa.manici@entecra.it
OI Manici, Luisa M./0000-0003-2798-4428
NR 147
TC 53
Z9 64
U1 10
U2 103
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 0066-4286
BN 978-0-8243-1350-0
J9 ANNU REV PHYTOPATHOL
JI Annu. Rev. Phytopathol.
PY 2012
VL 50
BP 45
EP 65
DI 10.1146/annurev-phyto-081211-173005
PG 21
WC Plant Sciences
SC Plant Sciences
GA BCG17
UT WOS:000310143200004
PM 22559069
ER
PT S
AU Mitchum, MG
Wang, XH
Wang, JY
Davis, EL
AF Mitchum, Melissa G.
Wang, Xiaohong
Wang, Jianying
Davis, Eric L.
BE VanAlfen, NK
Leach, JE
Lindow, S
TI Role of Nematode Peptides and Other Small Molecules in Plant Parasitism
SO ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 50
SE Annual Review of Phytopathology
LA English
DT Review; Book Chapter
DE CLAVATA; CLE; effectors; ligand mimicry; peptide hormone; receptors;
signaling
ID ROOT-KNOT NEMATODE; HORIZONTAL GENE-TRANSFER; ESOPHAGEAL GLAND-CELLS;
HETERODERA-SCHACHTII; MELOIDOGYNE-INCOGNITA; ARABIDOPSIS-THALIANA;
SECRETED PROTEINS; GLOBODERA-ROSTOCHIENSIS; EFFECTOR PROTEIN; CLE
PEPTIDES
AB Molecular, genetic, and biochemical studies are demonstrating an increasingly important role of peptide signaling in nematode parasitism of plants. To date, the majority of nematode-secreted peptides identified share similarity with plant CLAVATA3/ESR (CLE) peptides, but bioinformatics analyses of nematode genomes have revealed sequences homologous to other classes of plant peptide hormones that may be utilized by these pests. Extracellular host receptors for secreted nematode peptides are beginning to be identified and their roles in parasitism elucidated. Here, we outline recent advances from studies of biologically active nematode-secreted peptides that function as molecular mimics of endogenous plant peptides to promote parasitism. Several strategies are being used to exploit this information to provide new targets for engineering nematode resistance.
C1 [Mitchum, Melissa G.; Wang, Jianying] Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA.
[Mitchum, Melissa G.; Wang, Jianying] Univ Missouri, Bond Life Sci Ctr, Columbia, MO 65211 USA.
[Wang, Xiaohong] Cornell Univ, USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
[Wang, Xiaohong] Cornell Univ, Dept Plant Pathol & Plant Microbe Biol, Ithaca, NY 14853 USA.
[Davis, Eric L.] N Carolina State Univ, Dept Plant Pathol, Raleigh, NC 27695 USA.
RP Mitchum, MG (reprint author), Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA.
EM goellnerm@missouri.edu; xw57@cornell.edu; wangjian@missouri.edu;
eric_davis@ncsu.edu
NR 123
TC 32
Z9 35
U1 4
U2 48
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 0066-4286
BN 978-0-8243-1350-0
J9 ANNU REV PHYTOPATHOL
JI Annu. Rev. Phytopathol.
PY 2012
VL 50
BP 175
EP 195
DI 10.1146/annurev-phyto-081211-173008
PG 21
WC Plant Sciences
SC Plant Sciences
GA BCG17
UT WOS:000310143200010
PM 22578179
ER
PT S
AU Stuart, JJ
Chen, MS
Shukle, R
Harris, MO
AF Stuart, Jeff J.
Chen, Ming-Shun
Shukle, Richard
Harris, Marion O.
BE VanAlfen, NK
Leach, JE
Lindow, S
TI Gall Midges (Hessian Flies) as Plant Pathogens
SO ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 50
SE Annual Review of Phytopathology
LA English
DT Review; Book Chapter
DE Cecidomyiidae; gene-for-gene interaction; resistance gene; avirulence
gene; effector proteins; nutritive tissue
ID FLY DIPTERA-CECIDOMYIIDAE; MAYETIOLA-DESTRUCTOR (SAY); GENE-MEDIATED
RESISTANCE; SALIVARY-GLAND PROTEINS; WINTER-WHEAT; CONFERRING
RESISTANCE; PROTEASE INHIBITORS; 3-COMPONENT SYSTEM; DISEASE RESISTANCE;
ADAPTIVE RADIATION
AB Gall midges constitute an important group of plant-parasitic insects. The Hessian fly (HF; Mayetiola destructor), the most investigated gall midge, was the first insect hypothesized to have a gene-for-gene interaction with its host plant, wheat (Triticum spp.). Recent investigations support that hypothesis. The minute larval mandibles appear to act in a manner that is analogous to nematode stylets and the haustoria of filamentous plant pathogens. Putative effector proteins are encoded by hundreds of genes and expressed in the HF larval salivary gland. Cultivar-specific resistance (R) genes mediate a highly localized plant reaction that prevents the survival of avirulent HF larvae. Fine-scale mapping of HF avirulence (Avr) genes provides further evidence of effector-triggered immunity (ETI) against HF in wheat. Taken together, these discoveries suggest that the HF, and other gall midges, may be considered biotrophic, or hemibiotrophic, plant pathogens, and they demonstrate the potential that the wheat-HF interaction has in the study of insect-induced plant gall formation.
C1 [Stuart, Jeff J.] Purdue Univ, Dept Entomol, W Lafayette, IN 47907 USA.
[Chen, Ming-Shun] Kansas State Univ, USDA ARS, Manhattan, KS 66506 USA.
[Chen, Ming-Shun] Kansas State Univ, Dept Entomol, Manhattan, KS 66506 USA.
[Shukle, Richard] Purdue Univ, USDA ARS, W Lafayette, IN 47909 USA.
[Shukle, Richard] Purdue Univ, Dept Entomol, W Lafayette, IN 47909 USA.
[Harris, Marion O.] N Dakota State Univ, Dept Entomol, Fargo, ND 58105 USA.
RP Stuart, JJ (reprint author), Purdue Univ, Dept Entomol, W Lafayette, IN 47907 USA.
EM stuartjj@purdue.edu; mchen@ksu.edu; shukle@purdue.edu;
marion.harris@ndsu.edu
NR 131
TC 42
Z9 42
U1 2
U2 57
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 0066-4286
BN 978-0-8243-1350-0
J9 ANNU REV PHYTOPATHOL
JI Annu. Rev. Phytopathol.
PY 2012
VL 50
BP 339
EP 357
DI 10.1146/annurev-phyto-072910-095255
PG 19
WC Plant Sciences
SC Plant Sciences
GA BCG17
UT WOS:000310143200017
PM 22656645
ER
PT S
AU Raaijmakers, JM
Mazzola, M
AF Raaijmakers, Jos M.
Mazzola, Mark
BE VanAlfen, NK
Leach, JE
Lindow, S
TI Diversity and Natural Functions of Antibiotics Produced by Beneficial
and Plant Pathogenic Bacteria
SO ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 50
SE Annual Review of Phytopathology
LA English
DT Review; Book Chapter
DE metagenomics; endophytes; entomopathogenic bacteria; biofilms; motility;
biocontrol
ID COMPLETE GENOME SEQUENCE; CYCLIC LIPOPEPTIDE PRODUCTION;
PSEUDOMONAS-FLUORESCENS PF-5; IMAGING MASS-SPECTROMETRY; SECONDARY
METABOLITE 2,4-DIACETYLPHLOROGLUCINOL; BACILLUS-AMYLOLIQUEFACIENS FZB42;
DOSE-RESPONSE RELATIONSHIPS; SOIL MICROBIAL COMMUNITY;
BIOLOGICAL-CONTROL; BIOFILM FORMATION
AB Soil- and plant-associated environments harbor numerous bacteria that produce antibiotic metabolites with specific or broad-spectrum activities against coexisting microorganisms. The function and ecological importance of antibiotics have long been assumed to yield a survival advantage to the producing bacteria in the highly competitive but resource-limited soil environments through direct suppression. Although specific antibiotics may enhance producer persistence when challenged by competitors or predators in soil habitats, at subinhibitory concentrations antibiotics exhibit a diversity of other roles in the life history of the producing bacteria. Many processes modulated by antibiotics may be inherently critical to the producing bacterium, such as the acquisition of substrates or initiation of developmental changes that will ensure survival under stressful conditions. Antibiotics may also have roles in more complex interactions, including in virulence on host plants or in shaping the outcomes of multitrophic interactions. The innate functions of antibiotics to producing bacteria in their native ecosystem are just beginning to emerge, but current knowledge already reveals a breadth of activities well beyond the historical perspective of antibiotics as weaponry in microbial conflicts.
C1 [Raaijmakers, Jos M.] Wageningen Univ, Phytopathol Lab, NL-6708 PB Wageningen, Netherlands.
[Mazzola, Mark] USDA ARS, Tree Fruit Res Lab, Wenatchee, WA 98801 USA.
RP Raaijmakers, JM (reprint author), Wageningen Univ, Phytopathol Lab, NL-6708 PB Wageningen, Netherlands.
EM jos.raaijmakers@wur.nl
RI Raaijmakers, Jos/D-1574-2014
OI Raaijmakers, Jos/0000-0003-1608-6614
NR 173
TC 79
Z9 81
U1 12
U2 156
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 0066-4286
BN 978-0-8243-1350-0
J9 ANNU REV PHYTOPATHOL
JI Annu. Rev. Phytopathol.
PY 2012
VL 50
BP 403
EP 424
DI 10.1146/annurev-phyto-081211-172908
PG 22
WC Plant Sciences
SC Plant Sciences
GA BCG17
UT WOS:000310143200020
PM 22681451
ER
PT S
AU Malnoy, M
Martens, S
Norelli, JL
Barny, MA
Sundin, GW
Smits, THM
Duffy, B
AF Malnoy, Mickael
Martens, Stefan
Norelli, John L.
Barny, Marie-Anne
Sundin, George W.
Smits, Theo H. M.
Duffy, Brion
BE VanAlfen, NK
Leach, JE
Lindow, S
TI Fire Blight: Applied Genomic Insights of the Pathogen and Host
SO ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 50
SE Annual Review of Phytopathology
LA English
DT Review; Book Chapter
DE Erwinia amylovora; Malus; Pyrus; transcriptomics; evolutionary genomics;
Pantoea
ID MALUS X DOMESTICA; ERWINIA-AMYLOVORA FUNCTIONS; UBIQUITOUS PLASMID
PEA29; QUANTITATIVE TRAIT LOCI; BIOCONTROL STRAIN C9-1;
PANTOEA-AGGLOMERANS; III EFFECTOR; PSEUDOMONAS-SYRINGAE; DISEASE
RESISTANCE; DEFENSE RESPONSES
AB The enterobacterial phytopathogen Erwinia amylovora causes fire blight, an invasive disease that threatens a wide range of commercial and ornamental Rosaceae host plants. The response elicited by E. amylovora in its host during disease development is similar to the hypersensitive reaction that typically leads to resistance in an incompatible host-pathogen interaction, yet no gene-for-gene resistance has been described for this host-pathogen system. Comparative genomic analysis has found an unprecedented degree of genetic uniformity among strains of E. amylovora, suggesting that the pathogen has undergone a recent genetic bottleneck. The genome of apple, an important host of E. amylovora, has been sequenced, creating new opportunities for the study of interactions between host and pathogen during fire blight development and for the identification of resistance genes. This review includes recent advances in the genomics of both host and pathogen.
C1 [Malnoy, Mickael; Martens, Stefan] Fdn Edmund Mach San Michele AllAdige, Dept Biol & Genom Fruit Plants, FEM IASMA Res & Innovat Ctr, Trento, Italy.
[Norelli, John L.] ARS, Appalachian Fruit Res Stn, USDA, Kearneysville, WV 25430 USA.
[Barny, Marie-Anne] AgroParisTech, INRA, UMR217, LIPP, F-75231 Paris 05, France.
[Sundin, George W.] Michigan State Univ, Dept Plant Pathol, E Lansing, MI 48823 USA.
[Smits, Theo H. M.; Duffy, Brion] Swiss Natl Competence Ctr Fire Blight, Agroscope Changins Wadenswil ACW, Div Plant Protect, CH-8820 Wadenswil, Switzerland.
RP Malnoy, M (reprint author), Fdn Edmund Mach San Michele AllAdige, Dept Biol & Genom Fruit Plants, FEM IASMA Res & Innovat Ctr, Trento, Italy.
EM mickael.malnoy@fmach.it
RI malnoy, mickael/C-5007-2012; Martens, Stefan/B-7659-2011;
OI Martens, Stefan/0000-0001-9913-4882; marie-anne,
barny/0000-0002-2005-1388
NR 128
TC 35
Z9 35
U1 2
U2 42
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 0066-4286
BN 978-0-8243-1350-0
J9 ANNU REV PHYTOPATHOL
JI Annu. Rev. Phytopathol.
PY 2012
VL 50
BP 475
EP 494
DI 10.1146/annurev-phyto-081211-172931
PG 20
WC Plant Sciences
SC Plant Sciences
GA BCG17
UT WOS:000310143200023
PM 22702352
ER
PT J
AU Busman, M
Butchko, RAE
Proctor, RH
AF Busman, M.
Butchko, R. A. E.
Proctor, R. H.
TI LC-MS/MS method for the determination of the fungal pigment bikaverin in
maize kernels as an indicator of ear rot
SO FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL
EXPOSURE & RISK ASSESSMENT
LA English
DT Article
DE maize; liquid chromatography-mass spectrometry; mycotoxin; bikaverin;
Fusarium
ID FUSARIUM-VERTICILLIOIDES; GIBBERELLA-FUJIKUROI; BIOSYNTHESIS;
MYCOTOXINS; OXYSPORUM; MONILIFORME; FUMONISINS; ACID; DNA
AB Bikaverin is a polyketide-derived pigment produced by multiple species of the fungus Fusarium, some of which can cause ear and kernel rot of maize. A method was developed for the analysis of bikaverin by high-performance liquid chromatography (LC) coupled to electrospray ionisation tandem mass spectrometry (MS/MS). The quantitative nature of the LC-MS/MS method was demonstrated over a range of concentrations of bikaverin in maize. For spike-recovery experiments utilising maize spiked with bikaverin to a level 5 mu g g(-1) of maize, the measured recovery (%) was 70.6 +/- 10.4. Based on the utilised method, the limit of detection (based on a signal-to-noise ratio (S/N) >3) was better than 0.5 mu g g(-1) from bikaverin spiked into uncontaminated ground maize. Further, the limit of quantitation (LOQ) was 3 mu g g(-1) (based on S/N >10) from bikaverin spiked into ground maize. The method was applied to assess contamination of maize with bikaverin following inoculation of developing maize ears with Fusarium verticillioides under agricultural field conditions.
C1 [Busman, M.; Butchko, R. A. E.; Proctor, R. H.] ARS, Bacterial Foodborne Pathogen & Mycol Res Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL 61604 USA.
RP Busman, M (reprint author), ARS, Bacterial Foodborne Pathogen & Mycol Res Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL 61604 USA.
EM Mark.Busman@ars.usda.gov
NR 26
TC 4
Z9 4
U1 3
U2 14
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1944-0049
J9 FOOD ADDIT CONTAM A
JI Food Addit. Contam. Part A-Chem.
PY 2012
VL 29
IS 11
BP 1736
EP 1742
DI 10.1080/19440049.2012.704528
PG 7
WC Chemistry, Applied; Food Science & Technology; Toxicology
SC Chemistry; Food Science & Technology; Toxicology
GA 018ZB
UT WOS:000309705600009
PM 22845490
ER
PT B
AU Finn, CE
Clark, JR
AF Finn, Chad E.
Clark, John R.
BE Badenes, ML
Byrne, DH
TI Blackberry
SO FRUIT BREEDING
SE Handbook of Plant Breeding
LA English
DT Article; Book Chapter
DE Rubus; Hybrid berry; Raspberry Blackberry Hybrid; Trailing; Erect;
Semierect Primocane-fruiting; Specialty Crops; Small Fruits
ID MARION TRAILING BLACKBERRY; REPEAT SSR MARKERS; BUSHY-DWARF-VIRUS;
LIQUID CHROMATOGRAPHY/MASS SPECTROMETRY; PRIMOCANE-FRUITING
BLACKBERRIES; CLONAL GERMPLASM REPOSITORY; FLORAL BUD DEVELOPMENT;
THORNLESS BLACKBERRY; ANTIOXIDANT ACTIVITY; CHROMOSOME-NUMBERS
AB Blackberries are in Rosaceae family, the Rubus genus and subgenus (formerly Eubatus). Commercial cultivars are a multispecies complex and generally do not have a species epitaph. The primary progenitor species for the cultivated blackberries are all perennial plants with biennial canes. In these species, vegetative canes called primocanes are produced the first year and after a dormant period they are called floricanes. The floricanes flower, fruit, and die while new vegetative primocanes are growing. Blackberries can be grown throughout much of the temperate regions in the world. They do best when grown on well-drained, fertile soils with adequate moisture, in regions with moderate or mild winters and moderate summertime conditions. Although blackberries are a minor crop among fruits, there have been hundreds of cultivars named ranging from wild selections to those developed from multiple cycles of selection. Initially, a germplasm pool was assembled that lead to cultivars that were commercially viable and that later had outstanding traits. Then, as sources of thornlessness were identified, breeders incorporated them into this germplasm, and eventually high-quality cultivars were developed. A primary focus of all programs is fruit quality for promoting consumption. Other objectives are disease and pest resistance, primocane-fruiting, productivity, yield, plant architecture, and thornlessness. The use of molecular and other techniques in blackberry has been very limited. The use of simple sequence repeat markers (SSR) was reported for assessing genetic similarity and fingerprinting.
C1 [Finn, Chad E.] ARS, USDA, Hort Crops Res Lab, Corvallis, OR 97330 USA.
[Clark, John R.] Univ Arkansas, Dept Hort, Fayetteville, AR 72701 USA.
RP Finn, CE (reprint author), ARS, USDA, Hort Crops Res Lab, 3420 NW Orchard Ave, Corvallis, OR 97330 USA.
EM finnc@hort.oregonstate.edu; jrclark@uark.edu
NR 171
TC 6
Z9 6
U1 1
U2 4
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0762-2
J9 HANDB PLANT BREED
JI Handb. Plant Breed.
PY 2012
VL 8
BP 151
EP 190
DI 10.1007/978-1-4419-0763-9_5
D2 10.1007/978-1-4419-0763-9
PG 40
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BZG38
UT WOS:000301511500005
ER
PT B
AU Reisch, BI
Owens, CL
Cousins, PS
AF Reisch, Bruce I.
Owens, Christopher L.
Cousins, Peter S.
BE Badenes, ML
Byrne, DH
TI Grape
SO FRUIT BREEDING
SE Handbook of Plant Breeding
LA English
DT Article; Book Chapter
DE Grape Breeding; Downy Mildew; Nematode; Phylloxera; Powdery Mildew;
Fruit Quality; Raisin; Seedless; Wine; Vitis; Vitis vinifera
ID VITIS-VINIFERA L.; POWDERY MILDEW RESISTANCE; ROOT-KNOT NEMATODE;
MARKER-ASSISTED SELECTION; QUANTITATIVE TRAIT LOCI; EMBRYOGENIC-CELL
SUSPENSIONS; FUNGAL DISEASE RESISTANCE; ALUMINUM-TOLERANCE GENE;
MICROSATELLITE MARKERS; WINE GRAPE
AB Grapes are grown worldwide, on about 7.9 million ha, and are used to produce wine, raisins, juice, jam, concentrate, and seed oils, as well as fresh fruit. Grapes (Vitis sp.) are members of the Vitaceae. Vitis includes two subgenera, Euvitis (38 chromosomes) and Muscadinia (40 chromosomes), with about 60 species in total. The primary centers of species diversity are North America and East Asia. Scion cultivars are derived chiefly from the European grape, Vitis vinifera, which was domesticated ca. 6,000-10,000 years ago in the region between the Black and Caspian Seas. Grapes spread east into Asia and west into the Mediterranean region. Rootstocks were developed from North American species, including V. riparia, V. rupestris, and V. berlandieri. Scion breeding programs focus on the development of cultivars adapted to biotic and abiotic stress, with high fruit quality, and time of ripening during desirable periods of market demand. Fungal disease resistance is a primary goal of many programs, while cold hardy cultivars help extend the limits of grape cultivation. Rootstock breeding focuses on providing protection against phylloxera and nematodes as well as adaptation to high pH, low pH, and/or water-stressed conditions. Rootstocks should propagate easily by grafting and cuttings. New cultivars are more rapidly adapted in the raisin and table grape sectors than in the wine industry, although there are several notable examples of successful wine grape cultivars developed by breeding. The availability of two published genomic DNA sequences has stimulated numerous projects to further understand the function of the ca. 30,000 grapevine genes. Marker-assisted selection, primarily for disease resistance and seedlessness, is being applied in many breeding programs. Projects that focus on breeding seedless cultivars commonly use embryo rescue techniques, enabling the crossing of two seedless parents, to increase the percentage of seedlings that are seedless. Genetic transformation is a routine procedure and is being used for both functional analysis of gene action as well as directly for cultivar improvement (both scions and rootstocks), although transgenic grape cultivars currently are not in commercial production.
C1 [Reisch, Bruce I.] Cornell Univ, NYS Agr Expt Stn, Dept Hort, Geneva, NY 14456 USA.
[Reisch, Bruce I.] Cornell Univ, NYS Agr Expt Stn, Dept Plant Breeding, Geneva, NY 14456 USA.
[Owens, Christopher L.; Cousins, Peter S.] ARS, USDA, Grape Genet Res Unit, NYS Agr Expt Stn, Geneva, NY USA.
RP Reisch, BI (reprint author), Cornell Univ, NYS Agr Expt Stn, Dept Hort, 630 W North St, Geneva, NY 14456 USA.
EM bruce.reisch@cornell.edu; chris.owens@ars.usda.gov;
peter.cousins@ars.usda.gov
NR 235
TC 25
Z9 25
U1 3
U2 27
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0762-2
J9 HANDB PLANT BREED
JI Handb. Plant Breed.
PY 2012
VL 8
BP 225
EP 262
DI 10.1007/978-1-4419-0763-9_7
D2 10.1007/978-1-4419-0763-9
PG 38
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BZG38
UT WOS:000301511500007
ER
PT B
AU Kempler, C
Hall, H
Finn, CE
AF Kempler, Chaim
Hall, Harvey
Finn, Chad E.
BE Badenes, ML
Byrne, DH
TI Raspberry
SO FRUIT BREEDING
SE Handbook of Plant Breeding
LA English
DT Article; Book Chapter
DE Rubus idaeus; Breeding; Resistance; Breeding history; World production;
Cold hardiness; Rubus; Idaeobatus; Phytophthora rubi (root rot);
Amphorophora; Raspberry bushy dwarf virus (RBDV); Primocane-fruiting;
floricane-fruiting
ID PHRAGMIDIUM-RUBI-IDAEI; COLD-HARDINESS RESEARCH; POSTHARVEST GRAY MOLD;
BUSHY-DWARF-VIRUS; RED RASPBERRY; BOTRYTIS-CINEREA; AMPHOROPHORA-IDAEI;
ROOT-ROT; GENETIC DIVERSITY; BERRY FRUITS
AB The red raspberry, Rubus idaeus L., is a valuable crop that has recently increased in production, generating a large interest in commercial ventures and in research. Traditionally, most of the crop has been sold to processors for freezing, jam production, canning, juice and flavorings for ice cream, yogurt, and other products, but in recent years fresh market production has increased and become a very important sector of this industry. There has been an increased interest in black, purple, and Arctic raspberries because of their high nutraceutical value. R. idaeus, a diploid (2n=14), is included in the ldaeobatus and is the most important commercial species in this subgenus. The flowers are hermaphroditic; however, in some cases, they are unisexual, especially among wild species. Domestication of raspberries is comparably recent as it occurred less than 500 years ago. Red raspberries are widely distributed in all temperate regions of Europe, Asia, and North America with the greatest diversity in China. Enriching the cultivated gene pool by incorporating the unique genetics from wild germplasm to meet the challenges that lie ahead is desired. Breeding goals are the improvement of fruit quality which includes selection for better preharvest hanging ability and postharvest shelf life and processed quality. Resistance to heat and cold and resistance to pests and disease are also important, as well as large fruit size, good presentation, and ease of harvest. Fruit color of the newer cultivars varies from very dark red to a light orange red and there has become a tradition of cultivar selection specifically for processing or for fresh market. There are now approximately 50 active raspberry breeding programs in 26 countries, mostly in Europe and North America. Use of molecular markers for genetic studies and mapping is referenced; however, in this crop, it is at an early stage with only a few genes mapped.
C1 [Kempler, Chaim] Agr & Agri Food Canada, Pacific Agri Food Res Ctr, Agassiz, BC V0M 1A0, Canada.
[Hall, Harvey] Shekinah Berries Ltd, Motueka, New Zealand.
[Finn, Chad E.] ARS, USDA, Hort Crops Res Lab, Corvallis, OR USA.
RP Kempler, C (reprint author), Agr & Agri Food Canada, Pacific Agri Food Res Ctr, POB 1000,6947 7 Highway, Agassiz, BC V0M 1A0, Canada.
EM Chaim.kempler@agr.gc.ca; hkhall@clear.net.nz; Chad.finn@ars.usda.gov
NR 134
TC 3
Z9 3
U1 2
U2 10
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0762-2
J9 HANDB PLANT BREED
JI Handb. Plant Breed.
PY 2012
VL 8
BP 263
EP 304
DI 10.1007/978-1-4419-0763-9_8
D2 10.1007/978-1-4419-0763-9
PG 42
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BZG38
UT WOS:000301511500008
ER
PT B
AU Zhebentyayeva, T
Ledbetter, C
Burgos, L
Llacer, G
AF Zhebentyayeva, Tatyana
Ledbetter, Craig
Burgos, Lorenzo
Llacer, Gerardo
BE Badenes, ML
Byrne, DH
TI Apricot
SO FRUIT BREEDING
SE Handbook of Plant Breeding
LA English
DT Article; Book Chapter
DE Prunus armeniaca; Centers of origin; Domestication; Eco-geographical
groups; Breeding goals; Breeding methods; Marker Assisted Selection; PPV
resistance; Fruit quality; Inheritance; Genetic maps; Molecular markers;
Genomic resources; Structural and functional genomics; Transgenics
ID PRUNUS-ARMENIACA L.; PLUM-POX-VIRUS; AGROBACTERIUM-MEDIATED
TRANSFORMATION; IMPROVE ADVENTITIOUS REGENERATION; CAROTENOGENIC
GENE-EXPRESSION; COAT PROTEIN GENE; AFLP MARKERS; SELF-COMPATIBILITY;
SHARKA DISEASE; LINKAGE MAPS
AB Apricot is in the Rosaceae family within the genus Prunus L., subgenus Prunophora Focke, and the section Armeniaca (Lam.) Koch. Depending on the classification system, the number of apricot species ranges from 3 to 12. Six distinct species are usually recognized: P. brigantina Vill., P. holosericeae Batal, P. armeniaca L., P. mandshurica (Maxim), P. sibirica L., Japanese apricot P. mume (Sieb.) Sieb. & Succ. Vavilov placed apricot in three centers of origin: the Chinese center (Central and Western China), the Central Asiatic center (Afghanistan, northwest India and Pakistan, Kashmir, Tajikistan, Uzbekistan, Xinjing province in China and western Tien-Shan), and the Near-Eastern center (interior of Asia Minor). Kostina further divided the cultivated apricot according to their adaptability into four major ecogeographical groups: (1) the Central Asian group, (2) the Iran-Caucasian group, (3) the European group, and (4) the Dzhungar-Zailij group. Many local cultivars are grown in the different areas and producing countries; however, these cultivars lack Important traits that needed by modern production and marketing systems. Breeding programs have and continue to develop cultivars with improved adaptability to the environment (temperature requirements, water deficit), extension of the harvest season, fruit quality for fresh consumption and processing, productivity, adequate tree size, and resistance to biotic stresses. The major objectives in apricot breeding programs are resistance to sharka caused by Plum Pox Virus, brown rot caused by Monilinia spp., bacterial diseases caused by Pseudomonas spp. and Xanthomonas arboricola pv. pruni (Smith), Chlorotic Leaf Roll Phytoplasma, and Apricot Decline Syndrome. Among these, PPV is the most limiting factor in Europe and much work has to be invested in developing PPV-resistant apricot cultivars. Molecular markers have been developed in apricot and used mainly for construction of linkage maps and genetic diversity studies.
C1 [Zhebentyayeva, Tatyana] Clemson Univ, Clemson, SC 29634 USA.
[Ledbetter, Craig] ARS, USDA, CDP&G, SJVASC, Parlier, CA USA.
[Burgos, Lorenzo] CEBAS CSIC, Murcia, Spain.
[Llacer, Gerardo] IVIA, Valencia, Spain.
RP Zhebentyayeva, T (reprint author), Clemson Univ, 116 Jordan Hall, Clemson, SC 29634 USA.
EM tzhebe@clemson.edu; craig.ledbetter@ars.usda.gov; burgos@cebas.csic.es;
gllacer@ivia.es
NR 213
TC 11
Z9 12
U1 1
U2 3
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0762-2
J9 HANDB PLANT BREED
JI Handb. Plant Breed.
PY 2012
VL 8
BP 415
EP 458
DI 10.1007/978-1-4419-0763-9_12
D2 10.1007/978-1-4419-0763-9
PG 44
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BZG38
UT WOS:000301511500012
ER
PT B
AU Pereira-Lorenzo, S
Ballester, A
Corredoira, E
Vieitez, AM
Agnanostakis, S
Costa, R
Bounous, G
Botta, R
Beccaro, GL
Kubisiak, TL
Conedera, M
Krebs, P
Yamamoto, T
Sawamura, Y
Takada, N
Gomes-Laranjo, J
Ramos-Cabrer, AM
AF Pereira-Lorenzo, Santiago
Ballester, Antonio
Corredoira, Elena
Vieitez, Ana M.
Agnanostakis, Sandra
Costa, Rita
Bounous, Giancarlo
Botta, Roberto
Beccaro, Gabriele L.
Kubisiak, Thomas L.
Conedera, Marco
Krebs, Patrik
Yamamoto, Toshiya
Sawamura, Yutaka
Takada, Norio
Gomes-Laranjo, Jose
Ramos-Cabrer, Ana M.
BE Badenes, ML
Byrne, DH
TI Chestnut
SO FRUIT BREEDING
SE Handbook of Plant Breeding
LA English
DT Article; Book Chapter
DE Castanea; Taxonomy; Cultivars; Rootstocks; Genetic resources; Breeding;
Genomics; Transgenic; Ecophysiology
ID CASTANEA-SATIVA MILL.; AGROBACTERIUM-MEDIATED TRANSFORMATION;
SIMPLE-SEQUENCE REPEATS; EASTERN NORTH-AMERICA; EUROPEAN CHESTNUT;
MICROSATELLITE MARKERS; SOMATIC EMBRYOS; MORPHOLOGICAL TRAITS;
GENETIC-VARIATION; UNITED-STATES
AB The genus Castanea, chestnuts and chinkapins, belongs to the family Fagaceae, which includes other important timber producing genera such as Quercus and Fagus. The genus Castanea is divided into three geographically delimited sections with at least seven consistently recognized interfertile species: 4 species in Asia (C. mollissima, C. henryi, C. seguinii, and C. crenata), two or more species in North America (C. dentata, C. ozarkensis, and C. pumila) and one in Europe and Turkey (C. saliva). The two most important diseases of chestnut are ink disease (Phytophthora) and chestnut blight (Cryphonectria). Resistance to these is the major objective for rootstock breeding in Europe and scion breeding in North America. In both cases, the source of resistance was Asian species. European breeding programs developed resistant hybrid rootstocks, which are propagated by stooling, cuttings, or in vitro culture. A major pest of chestnut is the gall wasp Dryocosmus kuriphilus whose control is based on the spread of parasitoids but also on the selection of resistant cultivars. For nut production, the most important breeding objectives include the following: good horticultural traits, product quality, suitability to storage and processing, and ease of peeling. For timber, important characters include wood quality, rapid growth, and nonchecking of wood (ring-shake). Molecular maps have been developed, which has expanded the genetic knowledge of the chestnut. An efficient genetic transformation protocol for C. saliva through the coculture of somatic embryos with different strains of Agrobacterium tumefaciens has been described.
C1 [Pereira-Lorenzo, Santiago; Ramos-Cabrer, Ana M.] Univ Santiago de Compostela, Dept Prod Vegetal, Lugo 27002, Spain.
[Ballester, Antonio; Corredoira, Elena; Vieitez, Ana M.] CSIC, Inst Invest Agrobiol Galicia, Santiago De Compostela 15080, Spain.
[Agnanostakis, Sandra] Connecticut Agr Expt Stn, New Haven, CT 06504 USA.
[Costa, Rita] Inst Nacl Recursos Biol IP Quinta Marques, P-2780159 Oeiras, Portugal.
[Bounous, Giancarlo] Univ Turin, Dept Colture Arboree, FAO CIHEAM Liaison Officer Subnetwork Chestnut, ISHS Grp Chestnut, Turin, Italy.
[Botta, Roberto; Beccaro, Gabriele L.] Univ Turin, Dept Colture Arboree, Grugliasco, TO, Italy.
[Kubisiak, Thomas L.] US Forest Serv, USDA, So Res Stn, So Inst Forest Genet, Saucier, MS 39574 USA.
[Conedera, Marco; Krebs, Patrik] WSL, Swiss Fed Inst Forest Snow & Landscape Res, Bellinzona, Switzerland.
[Yamamoto, Toshiya; Sawamura, Yutaka; Takada, Norio] Natl Inst Fruit Tree Sci, Tsukuba, Ibaraki 3058605, Japan.
[Gomes-Laranjo, Jose] Univ Tras Os Montes & Alto Douro, CITAB, P-5001801 Vila Real, Portugal.
RP Pereira-Lorenzo, S (reprint author), Univ Santiago de Compostela, Dept Prod Vegetal, Campus Lugo, Lugo 27002, Spain.
EM santiago.pereira.lorenzo@usc.es; aballester@iiag.csic.es;
elenac@iiag.csic.es; amvieitez@iiag.csic.es; Sandra.Anagnostakis@ct.gov;
rita.lcosta@inrb.pt; giancarlo.bounous@unito.it; roberto.botta@unito.it;
gabriele.beccaro@unito.it; tkubisiak@fs.fed.us; marco.conedera@wsl.ch;
patrik.krebs@wsl.ch; toshiya@affrc.go.jp; ysawa@affrc.go.jp;
ntakada@affrc.go.jp; jlaranjo@utad.pt; ana.ramos@usc.es
NR 182
TC 3
Z9 4
U1 1
U2 13
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0762-2
J9 HANDB PLANT BREED
JI Handb. Plant Breed.
PY 2012
VL 8
BP 729
EP 769
DI 10.1007/978-1-4419-0763-9_19
D2 10.1007/978-1-4419-0763-9
PG 41
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BZG38
UT WOS:000301511500019
ER
PT B
AU Thompson, TE
Conner, PJ
AF Thompson, Tommy E.
Conner, Patrick J.
BE Badenes, ML
Byrne, DH
TI Pecan
SO FRUIT BREEDING
SE Handbook of Plant Breeding
LA English
DT Article; Book Chapter
DE Pecan; Breeding; Genetics Host plant resistance; Insect resistance;
Disease resistance; Trees; Nuts; Hickory; Plant selection; Carya
illinoinensis
ID CLADOSPORIUM-CARYIGENUM; SOMATIC EMBRYOGENESIS; MALATE-DEHYDROGENASE;
PHYLLOXERA HOMOPTERA; LEAF PHYLLOXERA; CULTIVARS; RESISTANCE;
INHERITANCE; SCAB; APHIDS
AB The pecan, Carya illinoinensis (Wangenh.) K. Koch, is the most economically important member of the Carya genus and is the most valuable native North American nut crop. The Carya genus is a member of the walnut family, Juglandaceae, and comprises 20 species. Over 98% of the world's annual pecan production is produced in the southern USA and northern Mexico. Pecan is a diploid (n = 16), monoecious, long-lived tree species. Owing to its heterodichogamy, pecan is primarily cross-pollinated, resulting in high heterozygosity with severe inbreeding depression when selfed. Establishment of commercial pecan orchards during the nineteenth century was mainly by planting open-pollinated nuts from mother trees possessing desirable characteristics. These orchards consist of trees with widely varying production and quality attributes due to the heterozygosity of pecan. Vegetative propagation became popular ca. 1900, and most newly planted orchards consist of a chosen combination of clonally propagated superior varieties. Clonally derived orchards are more productive and produce nuts of much higher quality than remaining native or seedling orchards. Thirteen Carya species, including pecan, are native to the USA. The National Clonal Germplasm Repository for Pecans and Hickories which preserves over 300 pecan cultivars, landraces, and species accessions was established in 1984 to describe and preserve this underutilized resource. Objectives of pecan breeding are higher yields and nut quality, and resistance to diseases and insects. Pecans are attacked by a wide range of disease and insect pests causing substantial losses to the crop. Various levels of resistance to scab and aphids are available in improved pecan varieties, and breeding programs are focusing on developing new cultivars with high levels of resistance in combination with good horticultural attributes. Another major effort in pecan breeding is the development of earlier maturing cultivars with the potential to bear more consistently over years.
C1 [Thompson, Tommy E.] USDA ARS, Pecan Genet & Breeding Program, Somerville, TX 77879 USA.
[Conner, Patrick J.] Univ GA, Tifton, GA 31793 USA.
RP Thompson, TE (reprint author), USDA ARS, Pecan Genet & Breeding Program, 10200 FM 50, Somerville, TX 77879 USA.
EM tommy.thompson@ars.usda.gov; pconner@uga.edu
NR 95
TC 7
Z9 7
U1 6
U2 10
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0762-2
J9 HANDB PLANT BREED
JI Handb. Plant Breed.
PY 2012
VL 8
BP 771
EP 801
DI 10.1007/978-1-4419-0763-9_20
D2 10.1007/978-1-4419-0763-9
PG 31
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BZG38
UT WOS:000301511500020
ER
PT J
AU LaFrentz, BR
Shoemaker, CA
Booth, NJ
Peterson, BC
Ourth, DD
AF LaFrentz, Benjamin R.
Shoemaker, Craig A.
Booth, Natha J.
Peterson, Brian C.
Ourth, Donald D.
TI Spleen Index and Mannose-Binding Lectin Levels in Four Channel Catfish
Families Exhibiting Different Susceptibilities to Flavobacterium
columnare and Edwardsiella ictaluri
SO JOURNAL OF AQUATIC ANIMAL HEALTH
LA English
DT Article
ID COLD-WATER DISEASE; RAINBOW-TROUT; ATLANTIC SALMON; ENTERIC SEPTICEMIA;
IMMUNE-RESPONSES; RESISTANCE; PUNCTATUS; FISH; CHALLENGE; SURVIVAL
AB Edwardsiella ictaluri and Flavobacterium columnare are two bacterial pathogens that affect channel catfish Ictalurus punctatus aquaculture. At the Catfish Genetics Research Unit (U.S. Department of Agriculture, Agricultural Research Service), some progress has been made in selectively breeding for resistance to E. ictaluri; however, the susceptibility of these families to F. columnare is not known. Our objectives were to obtain baseline information on the susceptibility of channel catfish families (maintained as part of the selective breeding program) to E. ictaluri and F. columnare and to determine whether the spleen index and plasma levels of mannose-binding lectin (MBL) are predictive indicators of susceptibility to these pathogens. Four channel catfish families were used: family A was randomly chosen from spawns of fish that were not selectively bred for resistance; families B, C, and D were obtained after selection for resistance to E. ictaluri. All four families were immersion challenged with both bacterial pathogens; the spleen index and plasma MBL levels of unchallenged fish from each family were determined. Mean cumulative percent mortality (CPM) after E. ictaluri challenge ranged from 4% to 33% among families. Families A and B were more susceptible to F. columnare (mean CPM of three independent challenges = 95% and 93%) than families C and D (45% and 48%), demonstrating that there is genetic variation in resistance to F. columnare. Spleen index values and MBL levels were not significantly different, indicating that these metrics are not predictive indicators of F. columnare or E. ictaluri susceptibility in the four tested families. Interestingly, the two families that exhibited the highest CPM after F. columnare challenges had the lowest CPM after E. ictaluri challenge. Further research on larger numbers of families is needed to determine whether there is any genetic correlation between resistance to E. ictaluri and resistance to F. columnare.
C1 [LaFrentz, Benjamin R.; Shoemaker, Craig A.] ARS, USDA, Aquat Anim Hlth Res Unit, Auburn, AL 36832 USA.
[Booth, Natha J.; Peterson, Brian C.] ARS, USDA, Catfish Genet Res Unit, Thad Cochran Natl Warmwater Aquaculture Ctr, Stoneville, MS 38776 USA.
[Ourth, Donald D.] Univ Memphis, Dept Biol, Memphis, TN 38152 USA.
RP LaFrentz, BR (reprint author), ARS, USDA, Aquat Anim Hlth Res Unit, 990 Wire Rd, Auburn, AL 36832 USA.
EM benjamin.lafrentz@ars.usda.gov
FU USDA-ARS Current Research Information System Project
[6420-32000-024-00D, 6402-31000-009-00D]
FX We thank Ning Qin, Paige Mumma, Cindi Ware, and Monica Wood (USDA-ARS)
for technical assistance and Scott LaPatra (Clear Springs Foods, Inc.)
for insightful discussions and critical review of the manuscript. This
research was funded by USDA-ARS Current Research Information System
Project Number 6420-32000-024-00D (Integrated Aquatic Animal Health
Strategies) and Project Number 6402-31000-009-00D (Genetics, Physiology,
and Health). Mention of trade names or commercial products in this
publication is solely for the purpose of providing specific information
and does not imply recommendation or endorsement by the USDA.
NR 29
TC 16
Z9 16
U1 0
U2 13
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0899-7659
J9 J AQUAT ANIM HEALTH
JI J. Aquat. Anim. Health
PY 2012
VL 24
IS 3
BP 141
EP 147
DI 10.1080/08997659.2012.675936
PG 7
WC Fisheries; Veterinary Sciences
SC Fisheries; Veterinary Sciences
GA 018YP
UT WOS:000309704300002
PM 22870893
ER
PT J
AU Yan, XH
Juneja, VK
Fratamico, PM
Smith, JL
AF Yan, Xianghe
Juneja, Vijay K.
Fratamico, Pina M.
Smith, James L.
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Omics, Microbial Modeling, and Food Safety Information Infrastructure: A
Food Safety Perspective
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID LISTERIA-MONOCYTOGENES; ESCHERICHIA-COLI; SYSTEMS BIOLOGY; PREDICTIVE
MICROBIOLOGY; MICROARRAY TECHNOLOGY; THERMAL INACTIVATION; FOODBORNE
PATHOGENS; METABOLIC NETWORK; TEMPERATURE; SALMONELLA
C1 [Yan, Xianghe; Juneja, Vijay K.; Fratamico, Pina M.; Smith, James L.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Yan, XH (reprint author), ARS, Eastern Reg Res Ctr, USDA, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM xianghe.yan@ars.usda.gov; vijay.juneja@ars.usda.gov;
pina.fratamico@ars.usda.gov; james.smith@ars.usda.gov;
vijay.juneja@ars.usda.gov; pina.fratamico@ars.usda.gov;
james.smith@ars.usda.gov
NR 61
TC 0
Z9 0
U1 0
U2 1
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 3
EP 16
PG 14
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100002
ER
PT J
AU Yan, XH
Juneja, VK
Fratamico, PM
Smith, JL
AF Yan, Xianghe
Juneja, Vijay K.
Fratamico, Pina M.
Smith, James L.
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Omics, Microbial Modeling, and Technologies in Food-borne Pathogens
Preface
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Editorial Material; Book Chapter
C1 [Yan, Xianghe; Juneja, Vijay K.; Fratamico, Pina M.; Smith, James L.] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
RP Yan, XH (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM xianghe.yan@ars.usda.gov; vijay.juneja@ars.usda.gov;
pina.fratamico@ars.usda.gov; james.smith@ars.usda.gov;
vijay.juneja@ars.usda.gov; pina.fratamico@ars.usda.gov;
james.smith@ars.usda.gov
NR 0
TC 0
Z9 0
U1 0
U2 0
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP XIII
EP XIV
PG 2
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100001
ER
PT J
AU Fratamico, PM
Smith, JL
AF Fratamico, Pina M.
Smith, J. L.
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Non-O157 Shiga Toxin-producing Escherichia coli
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID HEMOLYTIC-UREMIC-SYNDROME; ANTIGEN GENE-CLUSTER; ACID RESISTANCE; PCR
AMPLIFICATION; MICROARRAY ANALYSIS; PROTEIN EXPRESSION; BACTERIAL WORLD;
UNITED-STATES; DNA-SEQUENCE; SWINE FECES
AB Shiga toxin-producing Escherichia coli (STEC), also known as verocytotoxin-producing E. coli, are important foodborne pathogens responsible for outbreaks of hemorrhagic colitis (HC) and hemolytic uremic syndrome (HUS). STEC that cause HC and HUS are also referred to as enterohemorrhagic E. coli (EHEC). E. coli O157:H7 is the most commonly recognized STEC in the United States; however, many other STEC serogroups have been isolated from animals and food and have caused human illness. STEC possess a number of virulence factors, and the production of Shiga toxins (Stx1 and/or Stx2) is the most critical. Non-O157 STEC are a heterogenous group of pathogens comprising many different serogroups/serotypes that show wide genetic diversity and a broad range of virulence gene combinations, and they cause a wide range of clinical symptoms. Although some information is known concerning genes that may play a role in virulence, not much is known about which genes are more important and which gene combinations are carried by strains that are highly pathogenic. The non-O157 STEC have not received the rigorous study that E. coli O157:H7 has undergone. The use of "omics" technologies (genomics/transcriptomics, proteomics, metabolomics, etc.) will provide a more comprehensive understanding of the molecular biology of STEC and help in identifying highly pathogenic strains. This chapter covers molecular serotyping of E. coli/STEC, epidemiology, virulence factors, stress tolerance, quorum sensing, molecular analysis, and SNP typing, with the main emphasis on E. coli O157:H7. The methods used for E. coli O157:H7 should also be applicable for studying non-O157 STEC.
C1 [Fratamico, Pina M.; Smith, J. L.] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
RP Fratamico, PM (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM pina.fratamico@ars.usda.gov; james.smith@ars.usda.gov;
pina.fratamico@ars.usda.gov; james.smith@ars.usda.gov
NR 108
TC 0
Z9 0
U1 1
U2 4
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 17
EP 41
PG 25
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100003
ER
PT J
AU Smith, JL
Paoli, G
AF Smith, James L.
Paoli, George
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Emerging Foodborne Pathogens
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID HEPATITIS-E-VIRUS; ESCHERICHIA-COLI O157-H; DIFFICILE-ASSOCIATED
DISEASE; HEMOLYTIC-UREMIC SYNDROME; STREPTOCOCCUS-SUIS SEROTYPE-2;
MICROVASCULAR ENDOTHELIAL-CELLS; MEMBRANE PROTEIN-A; CRONOBACTER
ENTEROBACTER-SAKAZAKII; INTESTINAL EPITHELIAL-CELLS; CYTOLETHAL
DISTENDING TOXIN
AB The emergence of new foodborne pathogens is due to a number of factors. An important factor is the globalization of the food supply with the possibility of the introduction of foodborne pathogens from other countries. Animal husbandry, food production, food processing, and food distribution systems have become large, high-intensity industries that can extend through several states or even countries, and the presence of a pathogen in food can spread to a very large number of consumers. The increase in the number of immunocompromised individuals due to disease, cancer, organ and tissue transplants, and old age increases the numbers of individuals that are more susceptible to foodborne illness. Changes in eating habits, such as increased willingness to try new foods and increased "eating-out", increased international business travel, and tourism may expose individuals to foods prepared and handled in an unsanitary manner. Microorganisms evolve in response to selection by environmental factors, may cross species barriers, gain virulence factors such as genes for toxin production or may increase toxin production. Therefore the emergence of new foodborne pathogens is due to a number of factors involving humans, the environment, microorganisms, and food production. Microorganisms that have the potential to become important new foodborne pathogens include hepatitis E virus, community-associated Clostridium difficile, Arcobacter species, adult-associated Cronobacter species, Streptococcus suis, and sorbitol-fermenting Escherichia coli O157:H.
C1 [Smith, James L.; Paoli, George] ARS, Mol Characterizat Foodborne Pathogens Res Unit, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Smith, JL (reprint author), ARS, Mol Characterizat Foodborne Pathogens Res Unit, Eastern Reg Res Ctr, USDA, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM james.smith@ars.usda.gov; george.paoli@ars.usda.gov;
james.smith@ars.usda.gov
NR 258
TC 0
Z9 0
U1 0
U2 7
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 181
EP 231
PG 51
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100009
ER
PT J
AU Wang, SL
Chen, HF
AF Wang, Shiliang
Chen, Haifeng
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Pathogenic Vibrio
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID MANNOSE-SENSITIVE HEMAGGLUTININ; FRAGMENT-LENGTH-POLYMORPHISM;
MULTILOCUS SEQUENCE-ANALYSIS; COMPARATIVE GENOMIC ANALYSIS;
CHOLERA-TOXIN PROPHAGE; CLASSICAL CTX PROPHAGE; O1 EL-TOR; PANDEMIC
STRAINS; GENE-EXPRESSION; FUNCTIONAL-CHARACTERIZATION
C1 [Wang, Shiliang] J Craig Venter Inst, Rockville, MD 20850 USA.
[Chen, Haifeng] USDA, Div Mol Biol, Ctr Food Safety & Appl Nutr, Washington, DC USA.
RP Wang, SL (reprint author), J Craig Venter Inst, 9704 Med Ctr Dr, Rockville, MD 20850 USA.
EM shiliang@jcvi.org; haifeng.chen@fda.hhs.gov
NR 142
TC 0
Z9 0
U1 0
U2 2
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 233
EP 268
PG 36
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100010
ER
PT J
AU Huang, LH
AF Huang, Lihan
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Methods for Mathematical Modeling of Microbial Growth in Food Systems
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID BACTERIAL-GROWTH; TEMPERATURE; KINETICS; PREDICTION; BEEF
C1 USDA ARS, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
RP Huang, LH (reprint author), USDA ARS, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM lihan.huang@ars.usda.gov
NR 17
TC 0
Z9 0
U1 1
U2 3
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 371
EP 387
PG 17
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100014
ER
PT J
AU Oscar, TP
AF Oscar, Thomas P.
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Innovative Modeling Approaches for Risk Assessments in Food Safety
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID SIMULATION-MODEL; SALMONELLA; CONTAMINATION; CHICKEN; POULTRY; TIME
C1 Univ Maryland Eastern Shore, USDA, ARS, Princess Anne, MD 21853 USA.
RP Oscar, TP (reprint author), Univ Maryland Eastern Shore, USDA, ARS, Food Sci & Technol Bldg, Princess Anne, MD 21853 USA.
EM thomas.oscar@ars.usda.gov
NR 8
TC 0
Z9 0
U1 0
U2 0
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 389
EP 422
PG 34
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100015
ER
PT J
AU Liu, GE
AF Liu, George E.
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI Next Generation Sequencers: Methods and Applications in Foodborne
Pathogens
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID AMPLICON PYROSEQUENCING BTEFAP; BACTERIAL DIVERSITY; HUMAN GENOME;
LISTERIA-MONOCYTOGENES; GENE-EXPRESSION; HIGH-RESOLUTION; VIRAL GENOME;
GUT MICROBES; RNA-SEQ; REVEALS
AB Next generation sequencers are able to produce millions of short sequence reads in a high-throughput, low-cost way. The emergence of these technologies has not only facilitated genome sequencing, but has also started to change the landscape of life sciences. This chapter will survey the methods and applications of next generation sequencers in whole-genome sequencing and resequencing, RNA-seq and ChIP-seq ranging from structural, functional and comparative genomics to metagenomics and epigenetics. We are beginning to witness broad impacts of these next generation sequencers on food safety, including the detection, identification and analysis of foodborne pathogens.
C1 ARS, USDA, Anim & Nat Resources Inst, Bovine Funct Genom Lab,Beltsville Agr Res Ctr BAR, Beltsville, MD 20705 USA.
RP Liu, GE (reprint author), ARS, USDA, Anim & Nat Resources Inst, Bovine Funct Genom Lab,Beltsville Agr Res Ctr BAR, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM george.liu@ars.usda.gov
NR 76
TC 0
Z9 0
U1 2
U2 5
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 531
EP 551
PG 21
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100019
ER
PT J
AU Bai, L
Yan, XH
Biswas, S
Fratamico, P
AF Bai, Li
Yan, Xianghe
Biswas, Saroj
Fratamico, Pina
BE Yan, X
Juneja, VK
Fratamico, PM
Smith, JL
TI RFID Technologies for Inspection of Imported Foods
SO OMICS, MICROBIAL MODELING AND TECHNOLOGIES FOR FOODBORNE PATHOGENS
LA English
DT Article; Book Chapter
ID MICROBIAL RISK-ASSESSMENT; MATHEMATICAL-MODELS; LAG PHASE; GROWTH;
SAFETY; PRODUCTS; SYSTEMS; STORAGE; MEAT
AB Foodborne illnesses typically occur due to contamination of food products with Escherichia coli, Salmonella spp., Listeria monocytogenes and other pathogens. Unfortunately, it takes several weeks to identify the source of such contamination, possibly due to lack of a central database system that is capable of tracking food products and a real-time food safety decision tool. In addition, the volume of imported foods to the U.S. has been increasing at an alarming rate since 1994, which makes inspection at port-of-entry a daunting task. It is important to develop an information infrastructure for food safety using a sustainable Radio-Frequency Identification (RFID) system. The system consists of: a) a passive RFID interface for sensing of shipped items; b) a portable hand-held system for automatic data logging and alerts; and c) a central database system for food safety data and coordination. This system can facilitate automatic data logging and real-time data reporting, networking, and coordination among the various users of food safety information, from production to consumption. Successful implementation of the system can be expanded in the future to a comprehensive food safety and risk assessment system for tracking all food products within the U.S.
C1 [Bai, Li; Biswas, Saroj] Temple Univ, Dept Elect & Comp Engn, Philadelphia, PA 19122 USA.
[Yan, Xianghe; Fratamico, Pina] USDA ARS, Wyndmoor, PA 19038 USA.
RP Bai, L (reprint author), Temple Univ, Dept Elect & Comp Engn, Philadelphia, PA 19122 USA.
EM lbai@temple.edu; xianghe.yan@ars.usda.gov; sbiswas@temple.edu;
pina.fratamico@ars.usda.gov
NR 35
TC 0
Z9 0
U1 0
U2 0
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-047-1
PY 2012
BP 603
EP 614
PG 12
WC Food Science & Technology; Microbiology
SC Food Science & Technology; Microbiology
GA BCG73
UT WOS:000310166100022
ER
PT S
AU Vose, JM
Ford, CR
Laseter, S
Dymond, S
Sun, G
Adams, MB
Sebestyen, S
Campbell, J
Luce, C
Amatya, D
Elder, K
Heartsill-Scalley, T
AF Vose, James M.
Ford, Chelcy R.
Laseter, Stephanie
Dymond, Salli
Sun, Ge
Adams, Mary Beth
Sebestyen, Stephen
Campbell, John
Luce, Charles
Amatya, Devendra
Elder, Kelly
Heartsill-Scalley, Tamara
BE Webb, AA
Bonell, M
Bren, L
Lane, PNJ
McGuire, D
Neary, DG
Nettles, J
Scott, DF
Stednick, JD
Wang, YH
TI Can forest watershed management mitigate climate change effects on water
resources?
SO REVISITING EXPERIMENTAL CATCHMENT STUDIES IN FOREST HYDROLOGY
SE IAHS Publication
LA English
DT Proceedings Paper
CT 25th General Assembly of the International Union of Geodesy and
Geophysics
CY JUN 28-JUL 07, 2011
CL Melbourne, AUSTRALIA
SP Int Commiss Water Resources Systems, Int Commiss Surface Water, Int Commiss Water Qual, Int Assoc Hydrol Sci, UNESCO-IHP, Forests NSW, USDA, Forest Serv, Chinese Acad Forestry, Weyerhaeuser CO, Colorado State Univ
DE United States Forest Service paired watersheds; climate change; stream
flow; forest management; interactions
ID SOUTHEASTERN UNITED-STATES; CO2 CONCENTRATIONS; TRENDS; PINE;
EVAPOTRANSPIRATION; VEGETATION; CATCHMENT; BALANCE; TRANSPIRATION;
ECOHYDROLOGY
AB Long-term hydrology and climate data from United States Forest Service Experimental Forests and Ranges (EFR) provide critical information on the interactions among climate, streamflow, and forest management practices. We examined the relationships among streamflow responses to climate variation and forest management using long-term data. Analysis of climate data from a subset of EFRs suggested an increase in air temperature over the past 20-30 years. Streamflow increased initially after cutting for all sites and cutting treatments, but the longer term responses vary considerably across sites and treatments. Streamflow response following cutting without vegetation conversion depends on variation in treatment, soils, vegetation, and climatic regimes among sites. Statistical models indicate that many of the management treatments result in forest stand structure and species composition interact with climate differently than the unmanaged reference stand, indicating that forest management may exacerbate or mitigate the effects of future climatic conditions.
C1 [Vose, James M.; Ford, Chelcy R.; Laseter, Stephanie] US Forest Serv, USDA, So Res Stn, Coweeta Hydrol Lab, Otto, NC 28763 USA.
RP Vose, JM (reprint author), US Forest Serv, USDA, So Res Stn, Coweeta Hydrol Lab, Otto, NC 28763 USA.
EM jvose@fs.fed.us
NR 46
TC 2
Z9 2
U1 1
U2 14
PU INT ASSOC HYDROLOGICAL SCIENCES
PI WALLINGFORD
PA INST OF HYDROLOGY, WALLINGFORD OX10 8BB, ENGLAND
SN 0144-7815
BN 978-1-907161-31-5
J9 IAHS-AISH P
PY 2012
VL 353
BP 12
EP 25
PG 14
WC Environmental Sciences; Forestry; Water Resources
SC Environmental Sciences & Ecology; Forestry; Water Resources
GA BCB17
UT WOS:000309564600003
ER
PT S
AU Neary, D
Hayes, D
Rustad, L
Vose, J
Gottfried, G
Sebesteyn, S
Johnson, S
Swanson, F
Adams, M
AF Neary, Daniel
Hayes, Deborah
Rustad, Lindsey
Vose, James
Gottfried, Gerald
Sebesteyn, Stephen
Johnson, Sherri
Swanson, Fred
Adams, Mary
BE Webb, AA
Bonell, M
Bren, L
Lane, PNJ
McGuire, D
Neary, DG
Nettles, J
Scott, DF
Stednick, JD
Wang, YH
TI US Forest Service Experimental Forests and Ranges Network: a continental
research platform for catchment-scale research
SO REVISITING EXPERIMENTAL CATCHMENT STUDIES IN FOREST HYDROLOGY
SE IAHS Publication
LA English
DT Proceedings Paper
CT 25th General Assembly of the International Union of Geodesy and
Geophysics
CY JUN 28-JUL 07, 2011
CL Melbourne, AUSTRALIA
SP Int Commiss Water Resources Systems, Int Commiss Surface Water, Int Commiss Water Qual, Int Assoc Hydrol Sci, UNESCO-IHP, Forests NSW, USDA, Forest Serv, Chinese Acad Forestry, Weyerhaeuser CO, Colorado State Univ
DE watersheds; paired catchments; research network; USA
ID MANAGEMENT; PROGRAM; FLOW
AB The US Forest Service initiated its catchment research program in 1909 with the first paired catchment study at Wagon Wheel Gap, Colorado, USA. It has since developed the Experimental Forests and Ranges Network, with over 80 long-term research study sites located across the contiguous USA, Alaska, Hawaii, and the Caribbean. This network provides a unique, powerful continental research platform for study of complex environmental and societal problems at the local, regional and landscape scale. The study of water and ecosystems through paired catchment studies has been an integral component of many of these studies since establishment in the early and mid 1900s. The Forest Service continues to maintain and develop a robust programme, emphasizing long-term research on watershed science. This paper gives an overview of US Forest Service catchment research, emphasizing paired-catchment studies, and highlighting important advances in ecosystem science and "lessons learned" over the last century of research.
C1 [Neary, Daniel] US Forest Serv, USDA, Rocky Mt Res Stn, Forestry Sci Lab, Flagstaff, AZ 86001 USA.
RP Neary, D (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, Forestry Sci Lab, 2500 S Pine Knoll Dr, Flagstaff, AZ 86001 USA.
EM dneary@fs.fed.us
NR 40
TC 1
Z9 1
U1 1
U2 2
PU INT ASSOC HYDROLOGICAL SCIENCES
PI WALLINGFORD
PA INST OF HYDROLOGY, WALLINGFORD OX10 8BB, ENGLAND
SN 0144-7815
BN 978-1-907161-31-5
J9 IAHS-AISH P
PY 2012
VL 353
BP 49
EP 57
PG 9
WC Environmental Sciences; Forestry; Water Resources
SC Environmental Sciences & Ecology; Forestry; Water Resources
GA BCB17
UT WOS:000309564600007
ER
PT S
AU Gottfried, G
Neary, D
Ffolliott, P
Koestner, K
AF Gottfried, Gerald
Neary, Daniel
Ffolliott, Peter
Koestner, Karen
BE Webb, AA
Bonell, M
Bren, L
Lane, PNJ
McGuire, D
Neary, DG
Nettles, J
Scott, DF
Stednick, JD
Wang, YH
TI Cascabel prescribed fire long-term watershed study: an opportunity to
monitor climate change
SO REVISITING EXPERIMENTAL CATCHMENT STUDIES IN FOREST HYDROLOGY
SE IAHS Publication
LA English
DT Proceedings Paper
CT 25th General Assembly of the International Union of Geodesy and
Geophysics
CY JUN 28-JUL 07, 2011
CL Melbourne, AUSTRALIA
SP Int Commiss Water Resources Systems, Int Commiss Surface Water, Int Commiss Water Qual, Int Assoc Hydrol Sci, UNESCO-IHP, Forests NSW, USDA, Forest Serv, Chinese Acad Forestry, Weyerhaeuser CO, Colorado State Univ
DE hydrology; experimental watersheds; oak savannas; fire effects;
prescribed fire; climate change; ecosystem monitoring; southwestern
United States; Southwestern Borderlands Region
AB Experimental watershed studies can provide answers to new challenges facing land managers and society including the impacts of fires and climate change on upstream and regional hydrology. The Cascabel Watersheds long-term prescribed fire study provides a unique opportunity to monitor climate change because of its location in an oak savanna situated between deserts or grasslands and the higher elevation oak-pine woodlands of the southwestern United States and northwestern Mexico. Continuing studies on the Cascabel Watersheds in southwestern New Mexico are evaluating the effects of cool-season prescribed fires (November-April), warm-season prescribed fires (May-October) and a wildfire on a range of physical and biological characteristics. The study is being conducted on 12 gauged watersheds ranging in size from 8 to 24 ha. Ecosystem data are collected at permanent locations. The large foundation of physical and biological records from the Cascabel Watersheds provides a basis for evaluating potential future climate change in the region.
C1 [Gottfried, Gerald] US Forest Serv, USDA, Rocky Mt Res Stn, Phoenix, AZ 85006 USA.
RP Gottfried, G (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, 2324 E McDowell Rd, Phoenix, AZ 85006 USA.
EM ggottfried@fs.fed.us
NR 35
TC 1
Z9 1
U1 1
U2 2
PU INT ASSOC HYDROLOGICAL SCIENCES
PI WALLINGFORD
PA INST OF HYDROLOGY, WALLINGFORD OX10 8BB, ENGLAND
SN 0144-7815
BN 978-1-907161-31-5
J9 IAHS-AISH P
PY 2012
VL 353
BP 144
EP 153
PG 10
WC Environmental Sciences; Forestry; Water Resources
SC Environmental Sciences & Ecology; Forestry; Water Resources
GA BCB17
UT WOS:000309564600017
ER
PT S
AU Neary, DG
AF Neary, Daniel G.
BE Webb, AA
Bonell, M
Bren, L
Lane, PNJ
McGuire, D
Neary, DG
Nettles, J
Scott, DF
Stednick, JD
Wang, YH
TI Forest paired catchment studies of water quality: past, present, and
future
SO REVISITING EXPERIMENTAL CATCHMENT STUDIES IN FOREST HYDROLOGY
SE IAHS Publication
LA English
DT Proceedings Paper
CT 25th General Assembly of the International Union of Geodesy and
Geophysics
CY JUN 28-JUL 07, 2011
CL Melbourne, AUSTRALIA
SP Int Commiss Water Resources Systems, Int Commiss Surface Water, Int Commiss Water Qual, Int Assoc Hydrol Sci, UNESCO-IHP, Forests NSW, USDA, Forest Serv, Chinese Acad Forestry, Weyerhaeuser CO, Colorado State Univ
DE water quality; hydrology; experimental catchments; forest disturbances;
climate change
ID SOUTHWESTERN BRITISH-COLUMBIA; SOUTH-EASTERN AUSTRALIA; STREAM
TEMPERATURE; NUTRIENT BUDGETS; LAND-USE; MOUNTAIN-CATCHMENTS; SEDIMENT
PRODUCTION; HEADWATER STREAMS; RIPARIAN BUFFERS; SITE PREPARATION
AB Forested catchments throughout the world are renowned for producing high quality water for human use. In the 20th century, experimental forest catchment studies played a key role in studying the processes contributing to high water quality. The hydrologic processes investigated on these paired catchments have provided the science base for examining water quality responses to natural disturbances such as wildfire, insect outbreaks, and extreme hydrologic events, and human-induced disturbances such as timber harvesting, site preparation, prescribed fires, fertilizer applications, pesticide usage, rainfall acidification, and mining. This paper examines some key scientific breakthroughs of the past, current research on water quality topics of concern, and the potential for using paired experimental catchments in the future for monitoring the effects of climate change on water quality.
C1 US Forest Serv, Rocky Mt Res Stn, Flagstaff, AZ 86001 USA.
RP Neary, DG (reprint author), US Forest Serv, Rocky Mt Res Stn, 2500 S Pine Knoll Dr, Flagstaff, AZ 86001 USA.
EM dneary@fs.fed.us
NR 156
TC 3
Z9 3
U1 1
U2 15
PU INT ASSOC HYDROLOGICAL SCIENCES
PI WALLINGFORD
PA INST OF HYDROLOGY, WALLINGFORD OX10 8BB, ENGLAND
SN 0144-7815
BN 978-1-907161-31-5
J9 IAHS-AISH P
PY 2012
VL 353
BP 169
EP 184
PG 16
WC Environmental Sciences; Forestry; Water Resources
SC Environmental Sciences & Ecology; Forestry; Water Resources
GA BCB17
UT WOS:000309564600019
ER
PT S
AU Hunsaker, CT
Neary, DG
AF Hunsaker, Carolyn T.
Neary, Daniel G.
BE Webb, AA
Bonell, M
Bren, L
Lane, PNJ
McGuire, D
Neary, DG
Nettles, J
Scott, DF
Stednick, JD
Wang, YH
TI Sediment loads and erosion in forest headwater streams of the Sierra
Nevada, California
SO REVISITING EXPERIMENTAL CATCHMENT STUDIES IN FOREST HYDROLOGY
SE IAHS Publication
LA English
DT Proceedings Paper
CT 25th General Assembly of the International Union of Geodesy and
Geophysics
CY JUN 28-JUL 07, 2011
CL Melbourne, AUSTRALIA
SP Int Commiss Water Resources Systems, Int Commiss Surface Water, Int Commiss Water Qual, Int Assoc Hydrol Sci, UNESCO-IHP, Forests NSW, USDA, Forest Serv, Chinese Acad Forestry, Weyerhaeuser CO, Colorado State Univ
DE erosion; sediment loads; headwater streams; forest management
AB Defining best management practices for forests requires quantification of the variability of stream sediment loads for managed and unmanaged forest conditions and their associated sediment sources. Although "best management practices" are used, the public has concerns about effects from forest restoration activities and commercial timber harvests. It is necessary to know the current and/or natural range of variability to be able to determine if management activity has a significant negative impact; only long-term research can provide such data. The Forest Service in the United States has such long-term watershed research. An annual sediment load from a watershed is determined by emptying a sediment basin located in the stream channel at the end of a water year. Sediment fences, stream bank pins, survey techniques, and turbidity sensors provide measurements that can be used to determine the sources of sediment. The importance of having an undisturbed watershed for "natural range of variability" to compare with watersheds previously or currently under active management is illustrated. For example, at the Kings River Experimental Watersheds one of the managed watersheds in the rain and snow zone, produced 1.8, 15.2, and 18.7 kg/ha for water years 2004, 2005, and 2006, respectively. The increase in sediment accumulation correlates with an increase in yearly precipitation. The undisturbed watershed and the snow-dominated watersheds produce similar, and sometimes higher, sediment loads for these same years.
C1 [Hunsaker, Carolyn T.] US Forest Serv, Pacific SW Res Stn, USDA, Fresno, CA 93710 USA.
RP Hunsaker, CT (reprint author), US Forest Serv, Pacific SW Res Stn, USDA, 2081 E Sierra Ave, Fresno, CA 93710 USA.
EM chunsaker@fs.fed.us
NR 13
TC 1
Z9 1
U1 0
U2 5
PU INT ASSOC HYDROLOGICAL SCIENCES
PI WALLINGFORD
PA INST OF HYDROLOGY, WALLINGFORD OX10 8BB, ENGLAND
SN 0144-7815
BN 978-1-907161-31-5
J9 IAHS-AISH P
PY 2012
VL 353
BP 195
EP 203
PG 9
WC Environmental Sciences; Forestry; Water Resources
SC Environmental Sciences & Ecology; Forestry; Water Resources
GA BCB17
UT WOS:000309564600021
ER
PT J
AU Pulido-Landinez, M
Laviniki, V
Sanchez-Ingunza, R
Guard, J
do Nascimento, VP
AF Pulido-Landinez, Martha
Laviniki, Vanessa
Sanchez-Ingunza, Roxana
Guard, Jean
do Nascimento, Vladimir Pinheiro
TI Use of FTA Cards for the Transport of DNA Samples of Salmonella spp.
from Poultry Products from Southern Brazil
SO ACTA SCIENTIAE VETERINARIAE
LA Portuguese
DT Article
DE FTA cards; Salmonella enterica; biohazard; PCR
ID FILTER-PAPER; MOLECULAR-DETECTION; DISEASE VIRUS; PCR; TEMPLATE
AB Background: The contamination of products with Salmonella is a major threat to the poultry industry because the possible transmission to humans and animals can produce a huge negative impact. The diversity of Salmonella enterica serotypes complicates the diagnostic systems and the transport. of live cultures to the diagnostic labs may represent a biohazard, Current methods for serotyping using antibodies do not work well for many Salmonella serotypes and reagents are not often available. For these reasons, methods that assign serotype by the analysis of DNA are preferred. One step that is currently in development is streamlining methods for DNA submission to the laboratories for sequencing. For this purpose, we investigated filter papers commercially available (Hinders Technology Associates - FTA) to ship DNA samples, Filter papers are impregnated with a chemical formulation that lyses cells, immobilizes DNA, and protects it from degradation. The objective of this study was to assess the feasibility of the FTA cards for transporting Salmonella DNA samples in order to reduce biohazards and if they would yield enough DNA in quantity and quality for molecular analyses,
Material, Methods & Results: In this study 156 samples of Salmonella enterica serotypes Enteritidis, Heidelberg, Hadar, Gallinarum, Typhimurium, Agona and Pullorum were isolated from poultry products and environments in southern Brazil. Samples were stored in the Avian Diagnostic and Research Center of the Federal University of Rio Grande do Sul. Following instructions for spotting cards with cell cultures at a density that visually matched a McFarland Turbidity Standard 0,5; they were shipped to the Agriculture Research Service of the United States Department of Agriculture (USDA-ARS, Athens, GA-USA), using FTA cards. Upon the reception of the cards, safety testing was performed by transferring one disk from each sample into 10 mL of brain heart infusion (BHI) tubes and incubated at 37 degrees C for 24 h. The BHI tube that showed turbidity after incubation was transferred to brilliant green (BG) agar and incubated at 37 degrees C. for 24 h to 48 h. If colonies were obtained in BG, biochemical analyses were performed by using the Enterotube method. Only one sample (S. Enteritidis) showed turbidity in BHI, but any bacterial growth was observed in the BG agar. The average DNA concentration, as measured by spectrophotometry, was 42,32 (+/-9,84) ng/mu L and the average 280/260 ratio was 1,9 (+/-0,09). All the analyzed samples were negative for live cultures of Salmonella and the DNA obtained was suitable for molecular testing.
Discussion: FTA cards can be used to transport DNA samples from pathogenic bacteria, reducing biohazards associated with shipping live cultures. The possibility of shipping DNA, in an economic and safe way, for testing samples at the laboratories facilitates the identification of Salmonella enterica serotypes that are circulating in the environment of poultry. Turbidity in BHI tubes that did not result in colonies on agar media may be caused by the presence of other contaminants such as environmental saprophytic microorganisms that may occurred during the process of handling the cards. DNA samples of Salmonella enterica shipped from Brazil to the United States for this set of isolates did not show bacterial growth. Thus the FTA cards provided safe and effective inactivation of the pathogen, and the DNA obtained from the cards were adequate for downstream analyses.
C1 [Pulido-Landinez, Martha; Laviniki, Vanessa; do Nascimento, Vladimir Pinheiro] Univ Fed Rio Grande do Sul, PPGCV, BR-91540000 Porto Alegre, RS, Brazil.
[Pulido-Landinez, Martha] Univ Nacl Colombia, Bogota, Colombia.
[Sanchez-Ingunza, Roxana; Guard, Jean] ARS, ESQRU, USDA, Athens, GA USA.
RP Pulido-Landinez, M (reprint author), Univ Fed Rio Grande do Sul, PPGCV, Av Bento Goncalves 9090, BR-91540000 Porto Alegre, RS, Brazil.
EM mpulidola@unal.edu.co
RI Nascimento, Vladimir/G-5593-2012
NR 20
TC 2
Z9 2
U1 0
U2 6
PU UNIV FED RIO GRANDE DO SUL
PI PORTO ALEGRE RS
PA FAC VET, CAIXA POSTAL 15017, PORTO ALEGRE RS, 91501-570, BRAZIL
SN 1678-0345
J9 ACTA SCI VET
JI Acta Sci. Vet.
PY 2012
VL 40
IS 4
AR 1073
PG 7
WC Veterinary Sciences
SC Veterinary Sciences
GA 015MP
UT WOS:000309450600008
ER
PT J
AU Milagro, FI
Gomez-Abellan, P
Campion, J
Martinez, JA
Ordovas, JM
Garaulet, M
AF Milagro, Fermin I.
Gomez-Abellan, Purificacion
Campion, Javier
Alfredo Martinez, J.
Ordovas, Jose M.
Garaulet, Marta
TI CLOCK, PER2 and BMAL1 DNA Methylation: Association with Obesity and
Metabolic Syndrome Characteristics and Monounsaturated Fat Intake
SO CHRONOBIOLOGY INTERNATIONAL
LA English
DT Article
DE Biomarker; Cytosine methylation; Epigenetics; MassARRAY; MUFA
ID PROMOTER METHYLATION; MEDITERRANEAN DIET; CIRCADIAN CLOCK; GENES;
EXPRESSION; SLEEP; NUTRITION; SHIFTWORK; VARIANTS; RHYTHM
AB The circadian clock system instructs 24-h rhythmicity on gene expression in essentially all cells, including adipocytes, and epigenetic mechanisms may participate in this regulation. The aim of this research was to investigate the influence of obesity and metabolic syndrome (MetS) features in clock gene methylation and the involvement of these epigenetic modifications in the outcomes. Sixty normal-weight, overweight and obese women followed a 16-weeks weight reduction program. DNA methylation levels at different CpG sites of CLOCK, BMAL1 and PER2 genes were analyzed by Sequenom's MassARRAY in white blood cells obtained before the treatment. Statistical differences between normal-weight and overweight + obese subjects were found in the methylation status of different CpG sites of CLOCK (CpGs 1, 5-6, 8 and 11-14) and, with lower statistical significance, in BMAL1 (CpGs 6-7, 8, 15 and 16-17). The methylation pattern of different CpG sites of the three genes showed significant associations with anthropometric parameters such as body mass index and adiposity, and with a MetS score. Moreover, the baseline methylation levels of CLOCK CpG 1 and PER2 CpGs 2-3 and 25 correlated with the magnitude of weight loss. Interestingly, the percentage of methylation of CLOCK CpGs 1 and 8 showed associations with the intake of monounsaturated and polyunsaturated fatty acids. This study demonstrates for the first time an association between methylation status of CpG sites located in clock genes (CLOCK, BMAL1 and PER2) with obesity, MetS and weight loss. Moreover, the methylation status of different CpG sites in CLOCK and PER2 could be used as biomarkers of weight-loss success, particularly CLOCK CPGs 5-6. (Author correspondence: garaulet@um.es)
C1 [Gomez-Abellan, Purificacion; Garaulet, Marta] Univ Murcia, Fac Biol, Dept Physiol, E-30100 Murcia, Spain.
[Milagro, Fermin I.; Campion, Javier; Alfredo Martinez, J.] Univ Navarra, Dept Nutr & Food Sci Physiol & Toxicol, E-31080 Pamplona, Spain.
[Ordovas, Jose M.] Tufts Univ, Nutr & Genom Lab, Jean Mayer US Dept Agr, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Ordovas, Jose M.] CNIC, Dept Epidemiol, Madrid, Spain.
[Ordovas, Jose M.] Inst Madrileno Estudios Avanzados Alimentac IMDEA, Madrid, Spain.
RP Garaulet, M (reprint author), Univ Murcia, Fac Biol, Dept Physiol, Campus Espinardo S-N, E-30100 Murcia, Spain.
EM garaulet@um.es
RI Milagro, Fermin/F-2315-2015;
OI Milagro, Fermin/0000-0002-3228-9916; Martinez Hernandez, J
Alfredo/0000-0001-5218-6941
FU Linea Especial of the University of Navarra [LE/97]; Spanish Ministerio
de Ciencia e Innovacion (MICINN) [BFU2011-24720]
FX Supported by the Linea Especial LE/97 of the University of Navarra and
the Spanish Ministerio de Ciencia e Innovacion (MICINN; Ref:
BFU2011-24720). The authors report no conflicts of interests.
NR 46
TC 53
Z9 54
U1 2
U2 35
PU INFORMA HEALTHCARE
PI LONDON
PA TELEPHONE HOUSE, 69-77 PAUL STREET, LONDON EC2A 4LQ, ENGLAND
SN 0742-0528
J9 CHRONOBIOL INT
JI Chronobiol. Int.
PY 2012
VL 29
IS 9
BP 1180
EP 1194
DI 10.3109/07420528.2012.719967
PG 15
WC Biology; Physiology
SC Life Sciences & Biomedicine - Other Topics; Physiology
GA 016XL
UT WOS:000309553100003
PM 23003921
ER
PT J
AU Zhao, L
Jones, WA
AF Zhao, L.
Jones, W. A.
TI Expression of heat shock protein genes in insect stress responses
SO ISJ-INVERTEBRATE SURVIVAL JOURNAL
LA English
DT Review
DE heat shock protein (Hsp); gene expression; abiotic stress; biotic stress
ID DROSOPHILA-MELANOGASTER; CHIRONOMUS-RIPARIUS; UP-REGULATION; FLESH FLY;
SARCOPHAGA-CRASSIPALPIS; AQUATIC LARVAE; THERMAL-STRESS; AEDES-AEGYPTI;
BOMBYX-MORI; TOLERANCE
AB The heat shock proteins (Hsps) that are abundantly expressed in insects are important modulators of insect survival. The expression of different Hsp genes are induced and modulated in insects in response to environmental inputs including abiotic stresses such as heat shock, ultraviolet radiation, chemical pesticides, as well as biotic stresses such as viruses, bacteria, fungi and other insects. This minireview will provide useful information related to the expression of Hsp genes in response to abiotic and biotic stressors as well as developmental regulation and modulation of Hsp genes involved with insect survival.
C1 [Zhao, L.; Jones, W. A.] ARS, Biol Control Pests Res Unit, Natl Biol Control Lab, USDA, Stoneville, MS 38776 USA.
RP Zhao, L (reprint author), ARS, Biol Control Pests Res Unit, Natl Biol Control Lab, USDA, POB 67, Stoneville, MS 38776 USA.
EM Liming.zhao@ars.usda.gov; walker.jones@ars.usda.gov
NR 78
TC 32
Z9 38
U1 7
U2 63
PU INVERTEBRATE SURVIVAL JOURNAL
PI MODENA
PA C/O ENZO OTTAVIANI UNIV MODENA & REGGIO EMILIA, DEPT BIOLOGIA ANIMALE,
VIA CAMPI, 213-D, MODENA, 41100, ITALY
SN 1824-307X
J9 ISJ-INVERT SURVIV J
JI ISJ-Invertebr. Surviv. J.
PY 2012
VL 9
IS 1
BP 93
EP 101
PG 9
WC Immunology; Zoology
SC Immunology; Zoology
GA 017PA
UT WOS:000309601300009
ER
PT J
AU Stanley, D
AF Stanley, D.
TI Aging and immunosenescence in invertebrates
SO ISJ-INVERTEBRATE SURVIVAL JOURNAL
LA English
DT Review
DE invertebrates; immunity; aging; immunosenescence; C. elegans; Drosophila
ID EPITHELIAL IMMUNE-SYSTEM; DROSOPHILA-MELANOGASTER; OXIDATIVE STRESS;
INNATE IMMUNITY; APIS-MELLIFERA; SENESCENCE; DEFENSE; WORKERS; AGE;
INFECTION
AB Most contemporary research into aging is driven by interest in the human aging process and in interventions that attenuate the normal and pathophysiological effects of aging, or senescence. Operationally, senescence is the progressive, inevitable breakdown of the organism. Among the changes associated with senescence is the diminished capacity of the immune systems and reactions to challenge, known as immunosenescence. Senescence and age-related immunosenescence has been recorded in several invertebrates, including insects. Two invertebrates, the worm, Caenorhabditis elegans, and the fruit fly, Drosophila melanogaster, are model organisms for research into mechanisms of senescence and of prolonged life spans. In this essay, I will treat some of the available information on immunosenescence in invertebrates. The purpose is to move away from trying to understand human senescence and toward generating new ideas around the application of research into invertebrate immunosenescence to contemporary and emerging problems in aquatic and terrestrial agriculture. I cover mechanisms of senescence, beginning with the original idea of increasing oxidative damage and moving to more recent views. I provide a thumb-nail sketch of insect immunity as a model for the generality of complex invertebrates, then discuss selected examples of immunosenescence in invertebrates. In some instances, changes that look like immunosenescence may be physiological resource trade-offs and I highlight a few examples. Finally, I complete the essay with a few remarks on the potential practical significance of research to understand immunosenescence in invertebrates.
C1 ARS, USDA, Biol Control Insects Res Lab, Columbia, MO 65203 USA.
RP Stanley, D (reprint author), ARS, USDA, Biol Control Insects Res Lab, 1503 S Providence Rd, Columbia, MO 65203 USA.
EM stanleyd@missouri.edu
NR 50
TC 8
Z9 8
U1 4
U2 35
PU INVERTEBRATE SURVIVAL JOURNAL
PI MODENA
PA C/O ENZO OTTAVIANI UNIV MODENA & REGGIO EMILIA, DEPT BIOLOGIA ANIMALE,
VIA CAMPI, 213-D, MODENA, 41100, ITALY
SN 1824-307X
J9 ISJ-INVERT SURVIV J
JI ISJ-Invertebr. Surviv. J.
PY 2012
VL 9
IS 1
BP 102
EP 109
PG 8
WC Immunology; Zoology
SC Immunology; Zoology
GA 017PA
UT WOS:000309601300010
ER
PT S
AU French, AD
AF French, Alfred D.
BA Horton, D
BF Horton, D
TI COMBINING COMPUTATIONAL CHEMISTRY AND CRYSTALLOGRAPHY FOR A BETTER
UNDERSTANDING OF THE STRUCTURE OF CELLULOSE
SO ADVANCES IN CARBOHYDRATE CHEMISTRY AND BIOCHEMISTRY, VOL 67
SE Advances in Carbohydrate Chemistry and Biochemistry
LA English
DT Review; Book Chapter
ID MOLECULAR-DYNAMICS SIMULATIONS; NEUTRON FIBER DIFFRACTION;
HYDROGEN-BONDING SYSTEM; METHYL-BETA-CELLOBIOSIDE; NATIVE RAMIE
CELLULOSE; SYNCHROTRON X-RAY; CRYSTAL-STRUCTURE;
CONFORMATIONAL-ANALYSIS; AB-INITIO; ELECTRON-DENSITY
C1 USDA, So Reg Res Ctr, New Orleans, LA 70179 USA.
RP French, AD (reprint author), USDA, So Reg Res Ctr, New Orleans, LA 70179 USA.
NR 197
TC 14
Z9 14
U1 5
U2 48
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0065-2318
BN 978-0-12-396527-1
J9 ADV CARBOHYD CHEM BI
JI Adv. Carbohydr .Chem. Biochem.
PY 2012
VL 67
BP 19
EP 93
DI 10.1016/B978-0-12-396527-1.00002-4
PG 75
WC Biochemistry & Molecular Biology; Chemistry, Organic
SC Biochemistry & Molecular Biology; Chemistry
GA BBU35
UT WOS:000308197100002
PM 22794182
ER
PT J
AU Leigh, SA
Branton, SL
Evans, JD
Collier, SD
AF Leigh, S. A.
Branton, S. L.
Evans, J. D.
Collier, S. D.
TI Effect of infection route and concurrent infectious bronchitis virus
vaccination on Mycoplasma gallisepticum disease pathology in an
experimental model
SO AVIAN PATHOLOGY
LA English
DT Article
ID F-STRAIN; NEWCASTLE-DISEASE; MIXED INFECTION; EGG-PRODUCTION; CHICKENS;
PATHOGENICITY; HENS; PARAMETERS; SYNOVIAE; VACCINES
AB The study of Mycoplasma gallisepticum (MG) infection is needed, not only to understand the disease process but also to understand the mechanisms by which MG vaccines protect the host. Many model systems have been used to study the MG disease process. This work compared two different routes of infection (intratracheal versus eye drop) in commercial pullets, looking for differences in the pathology (air sac and tracheal lesion scores, and tracheal mucosal thickness) and the humoral immune response (measured by serum plate agglutination) of the host. The impact of concurrent infectious bronchitis virus vaccination on disease outcomes was also determined. Results showed that the intratracheal route of MG infection caused increased air sac and tracheal lesion scores and tracheal mucosal thickness at one week post infection, whereas the eye drop route produced no noticeable pathology. However, tracheal mucosal thicknesses of intratracheally challenged pullets were not statistically different from those of the eye drop challenged or control pullets at two and three weeks post infection. Concurrent infectious bronchitis virus vaccination had a negligible outcome on disease pathology. Vaccination of specific-pathogen-free chickens with the F-strain MG vaccine completely protected them against the effects of MG intratracheal infectious challenge, as evidenced by a lack of significant difference in air sac and tracheal lesion scores and tracheal mucosal thickness with those of unchallenged media control chickens.
C1 [Leigh, S. A.; Branton, S. L.; Evans, J. D.; Collier, S. D.] ARS, USDA, S Cent Poultry Res Unit, Mississippi State, MS 39762 USA.
RP Leigh, SA (reprint author), ARS, USDA, S Cent Poultry Res Unit, Mississippi State, MS 39762 USA.
EM spencer.leigh@ars.usda.gov
NR 31
TC 4
Z9 4
U1 0
U2 6
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0307-9457
J9 AVIAN PATHOL
JI Avian Pathol.
PY 2012
VL 41
IS 5
BP 497
EP 503
DI 10.1080/03079457.2012.721925
PG 7
WC Veterinary Sciences
SC Veterinary Sciences
GA 015EJ
UT WOS:000309428000013
PM 23025670
ER
PT J
AU Hse, CY
Shupe, TF
Pan, H
Feng, F
AF Hse, Chung Y.
Shupe, Todd F.
Pan, Hui
Feng, Fu
TI Veneer-Reinforced Particleboard for Exterior Structural Composition
Board
SO FOREST PRODUCTS JOURNAL
LA English
DT Article
ID SOUTHERN PINE; STRAND CORE; FACES; PLYWOOD; PANELS
AB Two experiments were performed to determine the physical and mechanical characteristics of panels consisting of a veneer face and a particleboard core composed of mixed wood particles/powdered-recycled polyethylene (PE) bag waste (MWP) using urea-formaldehyde (UF) resin as a binder. The addition of 25 percent powdered-recycled PE bag waste to the MWP panels did not adversely affect nonaged bonding strength but did result in substantial improvement in internal bond (IB) retention after a 24-hour water soak and improved dimensional stability. Average MWP panel IB retention was more than 300 percent higher than the IB retention of wood particle (WP) panels and MWP thickness swell and linear expansion were 70 and 44 percent lower, respectively, than the values for WP panels. For the veneer overlay composite, the mean modulus of rupture (MOR) parallel to the surface grain veneer (MOR parallel to) was lowest (3,668.2 pounds per square inch [psi]) for panels with two veneers cross-laminated on each face over a WP core. Conversely, MOR parallel to was greatest (8,535.6 psi) for panels with single 1/8-inch veneers on each face over an MWP core. However, the large percentage of shear failure when stressed parallel to face veneer grain hindered an accurate determination of true MOR. As expected, all specimens tested in bending parallel to the surface grain of the veneers resulted in higher modulus of elasticity (MOE) than those tested perpendicular to the grain. For a single veneer overlay on each face, it is interesting to note that thinner veneers (i.e., 1/8 in.) resulted in higher MOE than thicker veneers (i.e., 3/16 in.).
C1 [Hse, Chung Y.] US Forest Serv, So Res Stn, USDA, Pineville, LA USA.
[Shupe, Todd F.] Louisiana State Univ, Ctr Agr, Sch Renewable Nat Resources, Louisiana Forest Prod Dev Ctr, Baton Rouge, LA 70803 USA.
[Pan, Hui] Louisiana State Univ, Ctr Agr, Dean Lee Res Sta, Alexandria, LA USA.
[Feng, Fu] Chinese Acad Forestry, Res Inst Wood Ind, Beijing, Peoples R China.
RP Hse, CY (reprint author), US Forest Serv, So Res Stn, USDA, Pineville, LA USA.
EM chse@fs.fed.us; tshupe@agcenter.lsu.edu; hpan@agcenter.lsu.edu;
feng@caf.ac.cn
NR 15
TC 1
Z9 2
U1 1
U2 2
PU FOREST PRODUCTS SOC
PI MADISON
PA 2801 MARSHALL COURT, MADISON, WI 53705-2295 USA
SN 0015-7473
J9 FOREST PROD J
JI For. Prod. J.
PY 2012
VL 62
IS 2
BP 139
EP 145
PG 7
WC Forestry; Materials Science, Paper & Wood
SC Forestry; Materials Science
GA 009HQ
UT WOS:000309017300009
ER
PT S
AU Xu, YZ
Wang, CP
Chu, FX
Frihart, CR
Lorenz, LF
Stark, NM
AF Xu, Yuzhi
Wang, Chunpeng
Chu, Fuxiang
Frihart, Charles R.
Lorenz, Linda F.
Stark, Nicole M.
BE Wang, D
TI Chemical Modification of Soy Flour Protein and Its Properties
SO MATERIALS FOR ENVIRONMENTAL PROTECTION AND ENERGY APPLICATION, PTS 1 AND
2
SE Advanced Materials Research
LA English
DT Proceedings Paper
CT International Conference on Materials for Environmental Protection and
Energy Application (MEPEA)
CY SEP 27-28, 2011
CL Kuala Lumpur, MALAYSIA
DE Soy flour protein; Acylation; Cross-linking; Adhesion strength; FTIR-ATR
ID FILM FORMATION; CONFORMATION; SYSTEMS
AB This work is to examine ways to chemically modify soy proteins flours and analyze the results and determine the adhesive performance. Reaction with acetic anhydride converts amine and hydroxyl groups to amides and esters, respectively that are less polar and can make the adhesive more water resistant. The succinic anhydride reacts with these same groups but the products have terminal carboxylic acid groups that can react with the polyamidoamine-epichlorohydrin (PAE) resin that is used to cross-link the soy adhesives for improving bond strength. The attenuated total reflectance infrared spectroscopy (ATR-IR) is used to examine changes in the soy flour in going from unmodified to acetylated and succinylated state.
C1 [Xu, Yuzhi; Wang, Chunpeng; Chu, Fuxiang] Chinese Acad Forestry, Inst Chem Ind Forest Prod, Nanjing 210042, Jiangsu, Peoples R China.
[Xu, Yuzhi; Frihart, Charles R.; Lorenz, Linda F.; Stark, Nicole M.] USDA Forest Serv, Forest Prod Lab, Madison, WI 53726 USA.
RP Xu, YZ (reprint author), Chinese Acad Forestry, Inst Chem Ind Forest Prod, Nanjing 210042, Jiangsu, Peoples R China.
EM xuyzz@hotmail.com; cfrihart@fs.fed.us; llorenz@fs.fed.us;
nstark@fs.fed.us
FU CAF-INT [2009C03]
FX This work is partially supported by CAF-INT Grant #2009C03 to Y. Xu.
NR 19
TC 0
Z9 0
U1 3
U2 12
PU TRANS TECH PUBLICATIONS LTD
PI DURNTEN-ZURICH
PA KREUZSTRASSE 10, 8635 DURNTEN-ZURICH, SWITZERLAND
SN 1022-6680
BN 978-3-03785-256-9
J9 ADV MATER RES-SWITZ
PY 2012
VL 343-344
BP 875
EP +
DI 10.4028/www.scientific.net/AMR.343-344.875
PN 1-2
PG 3
WC Energy & Fuels; Engineering, Biomedical; Materials Science,
Multidisciplinary
SC Energy & Fuels; Engineering; Materials Science
GA BCA22
UT WOS:000309383700145
ER
PT S
AU Li, FJ
Wang, CL
He, D
Liu, YQ
Chen, MH
Wang, YR
Li, FJ
Yang, ZH
Chen, G
AF Li, Fengjuan
Wang, Changlu
He, Dong
Liu, Yaqiong
Chen, Mianhua
Wang, Yurong
Li, Fengjuan
Yang, ZhaoHui
Chen, Grace
BE Wang, D
TI Evaluation of Genetic Diversity in Castor (Ricinus communis L.) using
RAPD Markers
SO MATERIALS FOR ENVIRONMENTAL PROTECTION AND ENERGY APPLICATION, PTS 1 AND
2
SE Advanced Materials Research
LA English
DT Proceedings Paper
CT International Conference on Materials for Environmental Protection and
Energy Application (MEPEA)
CY SEP 27-28, 2011
CL Kuala Lumpur, MALAYSIA
DE Germplasm; RAPD; Molecule marker; cluster; analysis; Abbreviations;
RAPD; Random amplified polymorphic DNA; HSW; 100-seed weight; UPGMA;
Unweighted pair group method with arithmetic means cluster analysis; GS;
Genetic similarity
AB RAPD markers are used to study the genetic diversity of the main planting on 37 castor varieties widely cultivated in china according to the oil content and other characteristic of different castor varieties. Genetic distance of 37 Chinese castor varieties is studied by RAPD markers analysis. RAPD analysis shows that a total of 122 bands arc amplified from random primers of 20 S series, including 71 polymorphic bands with polymorphic rate of 58.20%. 37 castor beans are divided into four major groups in the phylogenetic tree. One castor germplasm is included in 1, 2, 3 groups respectively, and two sub-groups are included in the 4 major group.
C1 [Li, Fengjuan; Wang, Changlu; He, Dong; Liu, Yaqiong; Chen, Mianhua; Wang, Yurong; Li, Fengjuan; Yang, ZhaoHui] Tianjin Univ Sci & Technol, Minist Educ, Key Lab Food Nutr & Safety, 1038 Dagu Nan Rd, Tianjin 300222, Peoples R China.
[Chen, Grace] USDA ARS, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Wang, CL (reprint author), Tianjin Univ Sci & Technol, Minist Educ, Key Lab Food Nutr & Safety, 1038 Dagu Nan Rd, Tianjin 300222, Peoples R China.
EM fengjuanli@gmail.com; changluwang2009@gmail.com
NR 15
TC 2
Z9 2
U1 0
U2 3
PU TRANS TECH PUBLICATIONS LTD
PI DURNTEN-ZURICH
PA KREUZSTRASSE 10, 8635 DURNTEN-ZURICH, SWITZERLAND
SN 1022-6680
BN 978-3-03785-256-9
J9 ADV MATER RES-SWITZ
PY 2012
VL 343-344
BP 981
EP +
DI 10.4028/www.scientific.net/AMR.343-344.981
PN 1-2
PG 3
WC Energy & Fuels; Engineering, Biomedical; Materials Science,
Multidisciplinary
SC Energy & Fuels; Engineering; Materials Science
GA BCA22
UT WOS:000309383700161
ER
PT J
AU Bebak, J
Garcia, JC
Darwish, A
AF Bebak, Julie
Garcia, Julio C.
Darwish, Ahmed
TI Effect of Copper Sulfate on Aeromonas hydrophila Infection in Channel
Catfish Fingerlings
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID ICTALURUS-PUNCTATUS RAFINESQUE; SALMO-GAIRDNERI RICHARDSON;
SUSCEPTIBILITY; EXPOSURE; TROUT; RAINBOW
AB Motile Aeromonas septicemia results from primary or secondary infection with bacteria from Aeromonas spp., including Aeromonas hydrophila. Since 2009, an emerging strain of A. hydrophila has been associated, as a primary pathogen, with significant morbidity and mortality in the U.S. catfish industry. Two 2 x 2 factorial experiments with five replicates were conducted to evaluate whether copper sulfate pentahydrate (CuSO4) at a concentration of 1% of total alkalinity (total alkalinity = 98 mg/L as CaCO3; total hardness = 60 mg/L as CaCO3; pH = 7.4) can reduce mortality of channel catfish Ictalurus punctatus after their exposure to this emerging strain of A. hydrophila. In experiment 1, fingerling channel catfish received an 18-h continuous bath exposure to CuSO4 after A. hydrophila challenge. Survival in the treatments challenged with A. hydrophila, both when exposed or unexposed to CuSO4, was significantly lower than survival in sham-exposed controls. Fish exposed to A. hydrophila and treated with copper sulfate had the lowest percent survival, at 18% (SE, 7.0), and survival was significantly different from the treatment in which fish were exposed to A. hydrophila but not treated with copper sulfate. In experiment 2, fish received a 4-h pretreatment with CuSO4 before exposure to A. hydrophila plus a 4-h treatment the next day. In experiment 2, when fish were exposed to A. hydrophila but not CuSO4, survival was 80.0% (SE, 5.5). For fish exposed to A. hydrophila and to CuSO4, survival was 50.0% (SE, 3.2). The percent mortality in the treatment exposed to A. hydrophila and to CuSO4 was signficantly different from all of the other treatments. This study demonstrated that, under these experimental conditions, CuSO4 application reduced survival when used as a treatment for infection of fingerling channel catfish with this strain of A. hydrophila.
C1 [Bebak, Julie; Garcia, Julio C.] USDA, ARS, Aquat Anim Hlth Res Unit, Auburn, AL 36830 USA.
[Darwish, Ahmed] USDA, Food Safety & Inspect Serv, Alameda, CA 94501 USA.
RP Bebak, J (reprint author), USDA, ARS, Aquat Anim Hlth Res Unit, 990 Wire Rd, Auburn, AL 36830 USA.
EM jbebakwilliams@gmail.com
FU U.S. Department of Agriculture, Agricultural Research Service, Current
Research Information Systems [6420-32000-024-00D]
FX This work was supported by the U.S. Department of Agriculture,
Agricultural Research Service, Current Research Information Systems
Project Number 6420-32000-024-00D. This research was conducted in
compliance with all relevant federal guidelines and institutional
policies. The mention of trade names or commercial products in this
publication is solely for the purpose of providing specific information
and does not imply recommendation or endorsement by the U.S. Department
of Agriculture.
NR 16
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U1 0
U2 2
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 4
BP 494
EP 498
DI 10.1080/15222055.2012.685212
PG 5
WC Fisheries
SC Fisheries
GA 014OR
UT WOS:000309385900010
ER
PT J
AU Bosworth, BG
AF Bosworth, Brian G.
TI Effects of Winter Feeding on Growth, Body Composition, and Processing
Traits of Co-Cultured Blue Catfish, Channel Catfish, and Channel Catfish
x Blue Catfish Hybrids
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID DIETARY-PROTEIN CONCENTRATION; ICTALURUS-PUNCTATUS; REGIMEN; WEIGHT; F-1
AB The effects of winter feeding on growth, body composition, and processing yield were compared for co-cultured blue catfish Ictalurus furcatus, channel catfish I. punctatus, and channel catfish x blue catfish hybrids. Fish (similar to 0.4-0.7 kg) from each genetic group were stocked communally at 5,625 fish/ha in ten 0.04-ha ponds during mid-November. Fish in five ponds were fed at 2% of initial body weight twice per week; fish in the other five ponds were not fed. The study was terminated after 14 weeks, and fish were weighed and processed. Analyzed traits were weight change (%), survival, and yields (%) of carcass, shank fillet, nugget, head, viscera, skin, intraperitoneal fat, liver, and ovary. Among fed fish, hybrids gained the most weight, channel catfish had intermediate weight gain, and blue catfish gained the least weight. Unfed blue catfish lost more weight than unfed channel catfish and hybrids. Survival was not different among genetic groups or between feeding regimes. Interactions among main effects for processing and body composition traits made generalizations difficult, but carcass yield was consistently higher for blue catfish and hybrids than for channel catfish, higher for females than for males, and higher for fed fish than for unfed fish. Shank fillet yield was higher for hybrids than for blue catfish and channel catfish, higher for females than for males, and higher for fed fish than for unfed fish. Nugget yield was higher for blue catfish than for channel catfish and hybrids and was higher for fed fish than for unfed fish. Blue catfish and hybrids had higher intraperitoneal fat yield and lower liver and ovary yield than channel catfish. Fed fish had higher intraperitoneal fat and liver yield than unfed fish. Winter feeding improved growth and fillet yield in all groups, but the benefits of winter feeding were lower for blue catfish than for channel catfish and hybrid catfish.
C1 ARS, USDA, Catfish Genet Res Unit, Stoneville, MS 38776 USA.
RP Bosworth, BG (reprint author), ARS, USDA, Catfish Genet Res Unit, POB 39, Stoneville, MS 38776 USA.
EM brian.bosworth@ars.usda.gov
NR 20
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U1 0
U2 5
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 4
BP 553
EP 559
DI 10.1080/15222055.2012.686958
PG 7
WC Fisheries
SC Fisheries
GA 014OR
UT WOS:000309385900018
ER
PT J
AU Young, MK
Schmetterling, DA
AF Young, Michael K.
Schmetterling, David A.
TI Movement and Capture Efficiency of Radio-Tagged Salmonids Sampled by
Electrofishing
SO NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT
LA English
DT Article
ID STREAM-DWELLING SALMONIDS; JUVENILE CHINOOK SALMON; MARK-RECAPTURE;
ATLANTIC SALMON; ONCORHYNCHUS-TSHAWYTSCHA; CUTTHROAT TROUT; FISH
ABUNDANCE; RAINBOW-TROUT; TRANSMITTERS; SIZE
AB Electrofishing-based estimates of fish abundance are common. Most population models assume that samples are drawn from a closed population, but population closure is sometimes difficult to achieve. Consequently, we individually electrofished 103 radio-tagged trout of two species, westslope cutthroat trout Oncorhynchus clarkii lewisi and brook trout Salvelinus fontinalis, in five streams in western Montana to quantify the influence of habitat and fish size on capture efficiency and movement related to electrofishing with unpulsed DC. First-pass capture efficiency was 46% and declined on subsequent passes. No variables were related to capture efficiency, and only the percentage of cobble or larger substrate was related to the probability that uncaptured fish would move during the first electrofishing pass. About 20% of the uncaptured fish did not move, and 95% traveled less than 18 m. We concluded that for these streams, the bias in abundance estimates from disregarding movement would be relatively minor.
C1 [Young, Michael K.] US Forest Serv, USDA, Rocky Mt Res Stn, Missoula, MT 59801 USA.
[Schmetterling, David A.] Montana Fish Wildlife & Pk, Missoula, MT 59804 USA.
RP Young, MK (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, 800 E Beckwith Ave, Missoula, MT 59801 USA.
EM mkyoung@fs.fed.us
FU U.S. Bureau of Land Management (BLM) Missoula field office; Northwestern
Energy (NWE)
FX We thank Robert Clark and Tracy Elam for assistance in the field and
data preparation. Funding was provided by the U.S. Bureau of Land
Management (BLM) Missoula field office and Northwestern Energy (NWE). We
thank Jo Christensen (BLM) and Sam Milodragovich (NWE) for logistical
support.
NR 48
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U1 0
U2 19
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0275-5947
J9 N AM J FISH MANAGE
JI North Am. J. Fish Manage.
PY 2012
VL 32
IS 5
BP 823
EP 831
DI 10.1080/02755947.2012.703158
PG 9
WC Fisheries
SC Fisheries
GA 014PN
UT WOS:000309388200002
ER
PT S
AU Guan, MJ
Cai, ZY
Zhu, YX
Lin, JM
AF Guan, Mingjie
Cai, Zhiyong
Zhu, Yixin
Lin, Jumei
BE Xiao, Y
Li, Z
Wang, R
Shan, B
Ghavami, K
TI Performance Evaluation of Bamboo Scrimber under Planner Machining
SO NOVEL AND NON-CONVENTIONAL MATERIALS AND TECHNOLOGIES FOR SUSTAINABILITY
SE Key Engineering Materials
LA English
DT Proceedings Paper
CT 13th International Conference on Non-Conventional Materials and
Technologies
CY SEP 22-24, 2011
CL Changsha, PEOPLES R CHINA
SP Int Comm NonConvent Mat & Technol, Natl Nat Sci Fdn China, Hunan Univ, China Minist Educ Key Lab Bldg Safety & Energy Efficiency, Int Network Bamboo & Rattan, Assoc Brasileira Mat & Tecnol NaoConvenc, Pontificia Univ Catolica Rio de Janeiro, Univ So California
DE bamboo scrimber; planing performance; surface roughness; feed speed;
cutting depth
ID STRUCTURAL COMPOSITE PRODUCTS; SURFACE-ROUGHNESS; FUNDAMENTAL
PROPERTIES; WOOD
AB This research evaluated the planing performance of bamboo scrimber boards at three feed speeds and three cutting depths and used two methods to assess the finished surfaces. A macroscopic grade assessment was made according to ASTM D 1666-87 for visible planing defects. The other assessment was a microscopic scale roughness test measuring surface average roughness in terms of GB/T 12472. The visible results showed that the finished surface quality of bamboo resulted mainly in Grades I and II, with the main defect being torn grain. The two evaluations method showed consistent results in surface quality that the highest percentage of Grade 1 was counted and the lowest roughness value occurred. Compared with the hardwood Sawtooth oak widely used in furniture industry in China, planning quality of bamboo scrimber board is better in terms of roughness.
C1 [Guan, Mingjie; Zhu, Yixin; Lin, Jumei] Nanjing Forestry Univ, Bamboo Engn & Res Ctr, 159 Longpan Rd, Nanjing 210037, Jiangsu, Peoples R China.
[Cai, Zhiyong] US Forest Serv, Forest Prod Lab, Madison, WI 53726 USA.
RP Guan, MJ (reprint author), Nanjing Forestry Univ, Bamboo Engn & Res Ctr, 159 Longpan Rd, Nanjing 210037, Jiangsu, Peoples R China.
EM mingjieguan@hotmail.com; zcai@fs.fed.us; zhuyixin@njfu.edu.cn;
jumeilin@163.com
FU State Key Technology R&D Program of Jiangsu Province [BE2004365];
priority academic program development of Jiangsu higher education
institutions; PAPD
FX We would like to thank an anonymous reviewer from Forest Products
Laboratory, Madison,WI for his helpful comments. This research was
supported by State Key Technology R&D Program of Jiangsu Province,
P.R.China(BE2004365). This research was sponsored by a project funded by
the priority academic program development of Jiangsu higher education
institutions, PAPD.
NR 17
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U1 2
U2 7
PU TRANS TECH PUBLICATIONS LTD
PI DURNTEN-ZURICH
PA KREUZSTRASSE 10, 8635 DURNTEN-ZURICH, SWITZERLAND
SN 1013-9826
J9 KEY ENG MATER
PY 2012
VL 517
BP 101
EP +
DI 10.4028/www.scientific.net/KEM.517.101
PG 2
WC Materials Science, Multidisciplinary
SC Materials Science
GA BBY69
UT WOS:000308846900014
ER
PT J
AU Mitchell, AD
Ramsay, TG
Caperna, TJ
Scholz, AM
AF Mitchell, Alva D.
Ramsay, Timothy G.
Caperna, Thomas J.
Scholz, Armin M.
TI Body composition of piglets exhibiting different growth rates
SO ARCHIV FUR TIERZUCHT-ARCHIVES OF ANIMAL BREEDING
LA English
DT Article
DE piglets; body composition; growth rate; dual energy X-ray absorptiometry
ID SOW-REARED PIGLETS; BIRTH-WEIGHT; ENERGY-INTAKE; SUBSEQUENT PERFORMANCE;
BABY PIGS; CARCASS; PROTEIN; QUALITY; TISSUE; FAT
AB The growth and composition of the neonatal pig is of interest because of potential impact on subsequent growth and finally, composition at market weight. The purpose of this study was to compare at weaning the growth and body composition of the largest and smallest pigs from each of 38 litters. At weaning (27 +/- 1.7 d) the largest (9.3 +/- 1.1 kg) and smallest (6.2 +/- 1.5 kg) pigs were selected for body composition measurement by dual energy X-ray absorptiometry (DXA). The body composition of the largest pigs consisted of 38% more fat, 32% more lean, and 29% more bone mineral content (P<0.001). However, when expressed as a percentage of body weight, there was no difference in the fat, lean or bone mineral content content of the two groups of pigs (P>0.05). A second study consisted of 12 pairs of pigs from 8 litters that were selected on the basis of having the same birth weight, but one pig out gaining the other by at least 50 g/day. At 21 days of age the selected pigs were scanned by DXA. For both groups combined, the correlation (r) between body weight and lean mass was 0.99, between body weight and fat mass it was 0.87, and between body weight at birth and body weight at weaning it was 0.56. The results of these studies revealed that, at weaning, the fastest and slowest growing pigs had similar proportions of fat, lean and bone mineral and, consistent with previous results, the rates of both fat and lean deposition were highly correlated (P<0.001) with total body growth rate.
C1 [Scholz, Armin M.] Univ Munich, Livestock Ctr, D-85764 Oberschleissheim, Germany.
[Mitchell, Alva D.; Ramsay, Timothy G.; Caperna, Thomas J.] USDA, ARS, Beltsville, MD 20705 USA.
RP Scholz, AM (reprint author), Univ Munich, Livestock Ctr, Sankt Hubertusstr 12, D-85764 Oberschleissheim, Germany.
EM a.s@lmu.de
OI Scholz, Armin Manfred/0000-0001-7075-0067
NR 27
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U1 1
U2 9
PU ARCHIV FUR TIERZUCHT
PI DUMMERSTORF
PA WILHELM-STAHL-ALLEE 2, D-18196 DUMMERSTORF, GERMANY
SN 0003-9438
J9 ARCH TIERZUCHT
JI Arch. Tierz.-Arch. Anim. Breed.
PY 2012
VL 55
IS 4
BP 356
EP 363
PG 8
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 010IY
UT WOS:000309089300006
ER
PT J
AU Unruh, TR
Lacey, LA
Headrick, HL
Pfannenstiel, RS
AF Unruh, Thomas R.
Lacey, Lawrence A.
Headrick, Heather L.
Pfannenstiel, Robert S.
TI The effect of the granulovirus (PapyGV) on larval mortality and feeding
behaviour of the Pandemis leafroller, Pandemis pyrusana (Lepidoptera:
Tortricidae)
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE PapyGV; granulovirus; Pandemis pyrusana; concentration response; feeding
behaviour; UV sensitivity
ID MOTH CYDIA-POMONELLA; GRANULOSIS-VIRUS; APPLE ORCHARDS; CENTRAL-EUROPE;
CODLING MOTH; CHORISTONEURA-ROSACEANA; PESTS; BIOCONTROL; NORTHERN;
PEARS
AB An indigenous betabaculovirus (PapyGV) of the Pandemis leafroller, Pandemis pyrusana (Kearfott), was studied in the laboratory and greenhouse to determine how the virus affected leafroller mortality and foliar damage. Probability of mortality increased with virus concentration as observed after 7 and 10 days of feeding on virus treated diet in neonates and second instar larvae. LC50 estimates for neonates at 7 and 10 days was 2743 and 389 occlusion bodies (OBs)/mm(2). For second instars, LC50 was 139,487 and 813 OBs/mm(2) at 7 and 10 days. There was no biologically significant mortality response to increasing virus concentrations by fourth instar larvae; however, when fourth instar larvae were infected with virus on diet and then fed apple leaves, the leaf area consumed declined up to 50% with higher virus concentrations. In a greenhouse study, neonate larvae that fed on seedlings treated with water showed >90% survival and 80% pupation rate of larvae after being transferred to diet. In contrast, larvae that fed on apple seedlings sprayed with 3 x 10(6) OBs/ml showed poor survival when transferred to diet after acquiring the virus and failed to reach the pupal stage. This virus shows promise for population regulation and can produce reduction in feeding damage.
C1 [Unruh, Thomas R.; Lacey, Lawrence A.; Headrick, Heather L.; Pfannenstiel, Robert S.] USDA ARS, Yakima Agr Res Lab, Wapato, WA USA.
RP Unruh, TR (reprint author), USDA ARS, Yakima Agr Res Lab, Wapato, WA USA.
EM thomas.unruh@ars.usda.gov
FU Washington Tree Fruit Research Commission; Western SARE
FX This work was made possible by technical assistance of Brad Sainsbury,
Martha Marquez, Dana Jones and Belinda Bray Bishop. Helpful critical
reviews of an earlier draft of the manuscript were provided by David
Horton, Donald Hostetter and Peter Landolt. Grants from the Washington
Tree Fruit Research Commission and Western SARE supported parts of this
research.
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PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 9
BP 981
EP 990
DI 10.1080/09583157.2012.701272
PG 10
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 010NO
UT WOS:000309101300001
ER
PT J
AU Nopsa, JFH
Baenziger, PS
Eskridge, KM
Peiris, KHS
Dowell, FE
Harris, SD
Wegulo, SN
AF Nopsa, John F. Hernandez
Baenziger, P. Stephen
Eskridge, Kent M.
Peiris, Kamaranga H. S.
Dowell, Floyd E.
Harris, Steven D.
Wegulo, Stephen N.
TI Differential accumulation of deoxynivalenol in two winter wheat
cultivars varying in FHB phenotype response under field conditions
SO CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE
LA English
DT Article
DE deoxynivalenol (DON); FHB index; Fusarium-damaged kernels (FDK);
Fusarium graminearum; Fusarium head blight (FHB); winter wheat
ID FUSARIUM HEAD BLIGHT; RESISTANCE; KERNELS; CEREALS; GRAIN; SCAB;
INFECTION; INTENSITY; DISEASE; BARLEY
AB Fusarium head blight (FHB) or scab, caused by Fusarium graminearum Schwabe [sexual stage Gibberella zeae (Schwein.) Petch], is a destructive disease of small grain cereals. Fusarium graminearum produces the mycotoxin deoxynivalenol (DON), which accumulates in and lowers the value and quality of grain. Field experiments were conducted from 2007 to 2009 to determine if two winter wheat cultivars varying in FHB phenotype response differentially accumulated DON. Secondary objectives were to model the relationship between FHB severity and DON, determine if environment (= year) influenced DON accumulation in the two cultivars, and measure the percentage of Fusarium-damaged kernels (FDK) in the two cultivars. The cultivar 'Harry' with a moderately resistant FHB phenotype consistently accumulated more DON (P <= 0.0358) than '2137' with a susceptible phenotype. The relationship between FHB severity and DON was linear and positive for both cultivars in all three years (0.32 <= R-2 <= 0.60; 0.0053 <= P <= 0.1092). Environment (= year) had a significant effect (P < 0.0001) on DON accumulation in both cultivars, and this effect was attributed to differences in rainfall amount and duration in the months of May and June. DON accumulation was highest in 2008 (average of 33.2 ppm in 'Harry' and 21.2 ppm in '2137') when there was steady, above-average rainfall in May and June. FDK was highest in 2008 and was higher in 'Harry' (64%) than in '2137' (46%). The results from this study suggest that a winter wheat cultivar with a moderately resistant FHB phenotype can be susceptible to FDK and DON accumulation. Based on these results, there is a need to standardize the criteria (FHB intensity, FDK, DON) for characterizing wheat cultivars as resistant or susceptible to FHB.
C1 [Baenziger, P. Stephen] Univ Nebraska, Dept Agron & Hort, Lincoln, NE 68583 USA.
[Eskridge, Kent M.] Univ Nebraska, Dept Stat, Lincoln, NE 68583 USA.
[Peiris, Kamaranga H. S.] Kansas State Univ, Dept Biol & Agr Engn, Manhattan, KS 66506 USA.
[Dowell, Floyd E.] USDA ARS, Ctr Grain & Anim Hlth Res, Engn & Wind Eros Res Unit, Manhattan, KS 66502 USA.
[Nopsa, John F. Hernandez; Harris, Steven D.; Wegulo, Stephen N.] Univ Nebraska, Dept Plant Pathol, Lincoln, NE 68583 USA.
RP Wegulo, SN (reprint author), Univ Nebraska, Dept Plant Pathol, Lincoln, NE 68583 USA.
EM swegulo2@unl.edu
RI Baenziger, Peter/C-6490-2014; Hernandez Nopsa, John Fredy/E-7366-2013;
OI Baenziger, Peter/0000-0002-9109-6954; Wegulo,
Stephen/0000-0002-4435-6055
FU US Department of Agriculture [59-0790-7-080]
FX This material is based upon work supported by the US Department of
Agriculture, under Agreement No. 59-0790-7-080. This is a cooperative
project with the US Wheat & Barley Scab Initiative. Any opinions,
findings, conclusions or recommendations expressed in this publication
are those of the author(s) and do not necessarily reflect the view of
the US Department of Agriculture. We are indebted to Kelly Benson for
assistance with DON analysis.
NR 31
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PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0706-0661
J9 CAN J PLANT PATHOL
JI Can. J. Plant Pathol.-Rev. Can. Phytopathol.
PY 2012
VL 34
IS 3
BP 380
EP 389
DI 10.1080/07060661.2012.695751
PG 10
WC Plant Sciences
SC Plant Sciences
GA 999GO
UT WOS:000308297900003
ER
PT J
AU Jiang, YN
Haudenshield, JS
Hartman, GL
AF Jiang, Y. N.
Haudenshield, J. S.
Hartman, G. L.
TI Characterization of Pythium spp. from soil samples in Illinois
SO CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE
LA English
DT Article
DE Glycine max; pathogenicity testing; Pythium root and seedling rot;
soybean pathogens
ID MOLECULAR PHYLOGENY; DAMPING-OFF; IDENTIFICATION; PHYTOPHTHORA;
RESISTANCE; ARCHER
AB Pythium root rot is widely distributed in major soybean (Glycine max) production areas throughout the world. There are many species of Pythium described on soybean and other crops, although not all species are pathogenic on these crops. The objectives of this study were to isolate and identify Pythium isolates obtained from field soils across Illinois and evaluate their pathogenicity on soybean seedlings. Soil samples were collected from 12 corn-soybean rotation fields in six Illinois counties. All isolates of Pythium were recovered through a baiting technique, identified to the species taxon using morphological and molecular techniques, and evaluated using an in vitro pathogenicity assay on soybean seedlings. Twenty-seven species of Pythium were identified, and P. cryptoirregulare, P. irregulare, P. sylvaticum, P. ultimum var. sporangiiferum and P. ultimum var. ultimum were highly pathogenic on soybean seedlings.
C1 [Jiang, Y. N.; Hartman, G. L.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Jiang, Y. N.] Shanghai Jiao Tong Univ, Plant Sci Dept, Sch Agr & Biol, Shanghai 200240, Peoples R China.
[Haudenshield, J. S.; Hartman, G. L.] USDA ARS, Urbana, IL 61801 USA.
RP Hartman, GL (reprint author), Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
EM ghartman@illinois.edu
FU Illinois Soybean Association
FX We thank the Illinois Soybean Association for partial financial support
of this research.
NR 27
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U1 0
U2 8
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0706-0661
J9 CAN J PLANT PATHOL
JI Can. J. Plant Pathol.-Rev. Can. Phytopathol.
PY 2012
VL 34
IS 3
BP 448
EP 454
DI 10.1080/07060661.2012.705326
PG 7
WC Plant Sciences
SC Plant Sciences
GA 999GO
UT WOS:000308297900009
ER
PT J
AU Grzebisz, W
Gaj, R
Sassenrath, GF
Halloran, JM
AF Grzebisz, Witold
Gaj, Renata
Sassenrath, G. F.
Halloran, J. M.
TI Fertilizer Use and Wheat Yield in Central and Eastern European Countries
from 1986 to 2005 and Its Implication for Developing Sustainable
Fertilizer Management Practices
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE CEE countries; fertilizer consumption; fertilizer use efficiency;
partial factor N productivity; P/N and K/N ratios; wheat yields; yield
gap; yield prognosis
ID PRODUCTION SYSTEMS; PRODUCTIVITY; PROSPECTS; NITROGEN
AB Economic and political challenges impact agricultural practices, production efficiency, and crop yields. We hypothesize that increased conversion efficiency of fertilizer to crop yield resulted from changes in fertilizer management in Central and Eastern European countries. Efficient nutrient management depends on fertilizer applied, management practices, and weather, which impact uptake, utilization efficiency, and crop yield. Trends in fertilizer consumption and wheat yields from 1986 to 2005 were studied for five countries. There were significant differences in yield gap, defined as the difference between potential and actual yields. Partial factor productivity of applied nitrogen fertilizer (N) is calculated from real and modified indices. A predictive metric is introduced based on the quantity of unworked, or nonproductive, N (N-uw). Sustainable cropping practices reduce Nuw and yield gap. Improved knowledge of crop responses to balanced plant nutrition at the country level contribute to improved agricultural and environmental policies and enhance production sustainability.
C1 [Sassenrath, G. F.] USDA ARS, CPSRU, Stoneville, MS 38776 USA.
[Grzebisz, Witold; Gaj, Renata] Poznan Univ Life Sci, Dept Agr Chem, Poznan, Poland.
[Halloran, J. M.] USDA ARS, New England Plant Soil & Water Res Lab, Orono, ME USA.
RP Sassenrath, GF (reprint author), USDA ARS, CPSRU, 141 Expt Stn Rd, Stoneville, MS 38776 USA.
EM Gretchen.Sassenrath@ars.usda.gov
NR 25
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U1 1
U2 12
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 18
BP 2358
EP 2375
DI 10.1080/00103624.2012.708080
PG 18
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 010VQ
UT WOS:000309123000003
ER
PT J
AU Busscher, WJ
Khalilian, A
Jones, MA
AF Busscher, W. J.
Khalilian, A.
Jones, M. A.
TI Tillage Management for Cotton in Southeastern Coastal Soils during Dry
Years
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Drought; rhizosphere; soil water
ID DEEP TILLAGE; PENETRATION RESISTANCE; LOAMY SAND; YIELD; SYSTEMS; WHEAT
AB With rising energy costs, expensive deep tillage needs to be reevaluated. In 2002 and 2003, tillage treatments were evaluated for effectiveness in increasing cotton yield when noninversion deep tillage was either performed annually or not. Tillage treatments included a nontilled control, a straight-legged subsoil shank with bedding, and strip tillage with each of the following: a straight-legged subsoil shank, a Paratill, and a Terra-Max. In 2003, treatments were split with half the plots tilled and half not. No-tillage treatment significantly reduced penetration resistances better than others. Tillage decreased penetration resistance and improved yield but differences were significant only half the time. Treatments not tilled in the second year did not have significantly reduced penetration resistance because of a lack of recompaction during a dry first growing season. Tilling the second year improved yield marginally. Producers need to decide whether to till after a dry year on a case-by-case basis.
C1 [Busscher, W. J.] ARS, Coastal Plains Soil Water & Plant Res Ctr, USDA, Florence, SC 29501 USA.
[Khalilian, A.] Clemson Univ, Biosyst Engn Dept, Edisto Res & Educ Ctr, Blackville, SC USA.
[Jones, M. A.] Clemson Univ, Pee Dee Res & Educ Ctr, Entomol Soils & Plant Sci Dept, Florence, SC 29506 USA.
RP Busscher, WJ (reprint author), ARS, Coastal Plains Soil Water & Plant Res Ctr, USDA, 2611 W Lucas St, Florence, SC 29501 USA.
EM warren.busscher@ars.usda.gov
NR 21
TC 0
Z9 0
U1 0
U2 6
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 19
BP 2564
EP 2574
DI 10.1080/00103624.2012.711878
PG 11
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 012WK
UT WOS:000309267200011
ER
PT J
AU Xu, JM
Jiang, JC
Hse, CY
Shupe, TF
AF Xu, Junming
Jiang, Jianchun
Hse, Chungyun
Shupe, Todd F.
TI Renewable chemical feedstocks from integrated liquefaction processing of
lignocellulosic materials using microwave energy
SO GREEN CHEMISTRY
LA English
DT Article
ID RIGID POLYURETHANE FOAM; POLYHYDRIC ALCOHOL; BIOMASS; PYROLYSIS; LIGNIN;
CELLULOSE; PRODUCTS; RESIDUES; PHENOL; STRAW
AB The objective of this investigation was to find a simple method for the production of phenolic rich products and sugar derivatives (biopolyols) via separation of liquefied lingocellulosic materials. Liquefaction of lignocellulosic materials was conducted in methanol at 180 degrees C for 15 min with the conversion of raw materials at about 75%. After liquefaction, the liquefied products were separated by addition of a sufficient amount of water. It was found that the hydrophobic phenolics could be largely separated from aqueous solutions. The phenolic products that precipitated from the aqueous phase were mainly composed of phenolic derivatives such as 2-methoxy-4-propyl-phenol and 4-hydroxy-3-methoxy-benzoic acid methyl ester. Afterwards, the aqueous solution was distilled under vacuum to remove water and formed a viscous liquid product henceforth termed biopolyol. As evidenced by GC-MS analysis, the biopolyols contained methyl sugar derivatives, including methyl beta-D-mannofuranoside, methyl alpha-D-galactopyranoside, methyl alpha-D-glucopyranoside, and methyl beta-D-glucopyranoside. The effect of glycerol on promotion of the liquefaction reaction was also studied. The yield of residue was significantly decreased from approximately 25 to 12% when a glycerol-methanol mixture was used as solvent rather than methanol. According to the GC-MS analysis, the total content of phenolics and poly-hydroxy compounds (including glycerol and sugar derivatives) in phenolic products and biopolyols was 65.9 and 84.9%, respectively. Therefore, a new method for fractionation of liquefied products was proposed according to the molecular structure of the biomass.
C1 [Xu, Junming; Jiang, Jianchun] CAF, Inst Chem Ind Forestry Prod, Nanjing 210042, Jiangsu, Peoples R China.
[Xu, Junming; Jiang, Jianchun] Key Lab Biomass Energy & Mat, Nanjing 210042, Jiangsu, Peoples R China.
[Hse, Chungyun] USDA Forest Serv, So Res Stn, Pineville, LA 71360 USA.
[Shupe, Todd F.] Louisiana State Univ, Ctr Agr, Sch Renewable Nat Resources, Baton Rouge, LA 70803 USA.
[Xu, Junming; Jiang, Jianchun] SFA, Natl Engn Lab Biomass Chem Utilizat, Nanjing 210042, Jiangsu, Peoples R China.
[Xu, Junming; Jiang, Jianchun] SFA, Key Lab Forest Chem Engn, Nanjing 210042, Jiangsu, Peoples R China.
RP Xu, JM (reprint author), CAF, Inst Chem Ind Forestry Prod, Nanjing 210042, Jiangsu, Peoples R China.
EM finechemistry@163.com; chse@fs.fed.us; tshupe@agcenter.lsu.edu
FU Commonweal Research Foundation of Forestry [201204801]
FX The authors would like to thank the "Commonweal Research Foundation of
Forestry" (201204801) for financial support during this investigation.
NR 18
TC 30
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U1 2
U2 54
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
ENGLAND
SN 1463-9262
J9 GREEN CHEM
JI Green Chem.
PY 2012
VL 14
IS 10
BP 2821
EP 2830
DI 10.1039/c2gc35805k
PG 10
WC Chemistry, Multidisciplinary; GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY
SC Chemistry; Science & Technology - Other Topics
GA 011BW
UT WOS:000309139400025
ER
PT J
AU Krantz, GW
Moser, JC
AF Krantz, Gerald W.
Moser, John C.
TI A new genus and species of Macrochelidae (Acari: Mesostigmata)
associated with the Texas leafcutting ant, Atta texana (Buckley) in
Louisiana, USA
SO INTERNATIONAL JOURNAL OF ACAROLOGY
LA English
DT Article
DE Mesostigmata; Macrochelidae; Atta; myrmecophile; cheliceral and
peritrematic morphology; cribrum
ID MITES ACARI; ARMY ANTS; UROPODINA; INSECTS; ECOLOGY; FAMILY
AB Adults and nymphs of a new genus and species of the family Macrochelidae are described from detritus cavities of the leaf-cutting ant, Atta texana. This new species is notable in having peritremes with no posterior loop, a series of small subterminal teeth on the fixed cheliceral digit rather than the single large tooth typical of other macrochelids and well-developed paranal cribral extensions in both the protonymph and the deutonymph, but not in adults.
C1 [Krantz, Gerald W.] Oregon State Univ, Dept Zool, Corvallis, OR 97331 USA.
[Moser, John C.] USDA Forest Serv, So Res Stn, Pineville, LA USA.
RP Krantz, GW (reprint author), Oregon State Univ, Dept Zool, Corvallis, OR 97331 USA.
EM krantzg@science.oregonstate.edu; johnmoser@fs.fed.us
NR 26
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Z9 6
U1 1
U2 8
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 0164-7954
EI 1945-3892
J9 INT J ACAROL
JI Int. J. Acarol.
PY 2012
VL 38
IS 7
BP 576
EP 582
DI 10.1080/01647954.2012.704396
PG 7
WC Entomology
SC Entomology
GA 010VZ
UT WOS:000309123900005
ER
PT J
AU Townshend, JR
Masek, JG
Huang, CQ
Vermote, EF
Gao, F
Channan, S
Sexton, JO
Feng, M
Narasimhan, R
Kim, D
Song, K
Song, DX
Song, XP
Noojipady, P
Tan, B
Hansen, MC
Li, MX
Wolfe, RE
AF Townshend, John R.
Masek, Jeffrey G.
Huang, Chengquan
Vermote, Eric. F.
Gao, Feng
Channan, Saurabh
Sexton, Joseph O.
Feng, Min
Narasimhan, Raghuram
Kim, Dohyung
Song, Kuan
Song, Danxia
Song, Xiao-Peng
Noojipady, Praveen
Tan, Bin
Hansen, Matthew C.
Li, Mengxue
Wolfe, Robert E.
TI Global characterization and monitoring of forest cover using Landsat
data: opportunities and challenges
SO INTERNATIONAL JOURNAL OF DIGITAL EARTH
LA English
DT Article
DE Landsat; land cover; forest cover change; global mapping; global
monitoring
ID DIGITAL CHANGE DETECTION; SUPPORT VECTOR MACHINES; REMOTELY-SENSED DATA;
TROPICAL DEFORESTATION; ATMOSPHERIC CORRECTION; SURFACE REFLECTANCE;
SPATIAL-RESOLUTION; SATELLITE DATA; MODIS DATA; RADIOMETRIC CALIBRATION
AB The compilation of global Landsat data-sets and the ever-lowering costs of computing now make it feasible to monitor the Earth's land cover at Landsat resolutions of 30 m. In this article, we describe the methods to create global products of forest cover and cover change at Landsat resolutions. Nevertheless, there are many challenges in ensuring the creation of high-quality products. And we propose various ways in which the challenges can be overcome. Among the challenges are the need for atmospheric correction, incorrect calibration coefficients in some of the data-sets, the different phenologies between compilations, the need for terrain correction, the lack of consistent reference data for training and accuracy assessment, and the need for highly automated characterization and change detection. We propose and evaluate the creation and use of surface reflectance products, improved selection of scenes to reduce phenological differences, terrain illumination correction, automated training selection, and the use of information extraction procedures robust to errors in training data along with several other issues. At several stages we use Moderate Resolution Spectro-radiometer data and products to assist our analysis. A global working prototype product of forest cover and forest cover change is included.
C1 [Townshend, John R.; Huang, Chengquan; Channan, Saurabh; Sexton, Joseph O.; Feng, Min; Narasimhan, Raghuram; Kim, Dohyung; Song, Danxia; Song, Xiao-Peng; Noojipady, Praveen] Univ Maryland, Dept Geog Sci, Global Land Cover Facil, College Pk, MD 20742 USA.
[Masek, Jeffrey G.; Tan, Bin; Wolfe, Robert E.] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
[Gao, Feng] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD USA.
RP Townshend, JR (reprint author), Univ Maryland, Dept Geog Sci, Global Land Cover Facil, College Pk, MD 20742 USA.
EM jtownshe@umd.edu
RI Wolfe, Robert/E-1485-2012; Masek, Jeffrey/D-7673-2012; Vermote,
Eric/K-3733-2012; Song, Xiao-Peng/F-4894-2014;
OI Wolfe, Robert/0000-0002-0915-1855; Song, Xiao-Peng/0000-0002-5514-0321;
Huang, Chengquan/0000-0003-0055-9798
FU NASA: MEASURES [NNX08AP33A]; NASA: LCLUC [NNX08AN72G]; NASA Terrestrial
Ecology Program
FX The research dealt here was supported by the following awards from NASA:
MEASURES: NNX08AP33A and LCLUC: NNX08AN72G. We also gratefully
acknowledge the earlier support from the NASA Terrestrial Ecology
Program which led to the creation of LEDAPS on which much of this work
is based. We acknowledge the help of two people in particular from USGS
EROS: Gyanesh Chander helped to identify the GLS 1990 images that have
most recent USGS calibration coefficients (similar to 50% of the GLS
1990 data-set). Rachel Headley helped us obtain the GLS data-sets. She
also helped significantly with our reordering of the GLS 1990 images
that had good calibration coefficients. We are also grateful to Yosio
Shimabukuro and Egidio Arai of the Brazilian National Institute for
Space Research (INPE) for help in acquiring the MSS images needed to
fill the large data gap over northern South America in the GLS 1975
data-set.
NR 81
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Z9 95
U1 5
U2 79
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1753-8947
J9 INT J DIGIT EARTH
JI Int. J. Digit. Earth
PY 2012
VL 5
IS 5
BP 373
EP 397
DI 10.1080/17538947.2012.713190
PG 25
WC Geography, Physical; Remote Sensing
SC Physical Geography; Remote Sensing
GA 010FC
UT WOS:000309079100001
ER
PT J
AU Kremens, RL
Dickinson, MB
Bova, AS
AF Kremens, R. L.
Dickinson, M. B.
Bova, A. S.
TI Radiant flux density, energy density and fuel consumption in mixed-oak
forest surface fires
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
ID DYNAMICS; COMBUSTION; EMISSION; VELOCITY; IMAGERY; FLAME; HEAT
AB Closing the wildland fire heat budget involves characterising the heat source and energy dissipation across the range of variability in fuels and fire behaviour. Meeting this challenge will lay the foundation for predicting direct ecological effects of fires and fire-atmosphere coupling. In this paper, we focus on the relationships between the fire radiation field, as measured from the zenith, fuel consumption and the behaviour of spreading flame fronts. Experiments were conducted in 8 x 8-m outdoor plots using preconditioned wildland fuels characteristic of mixed-oak forests of the eastern United States. Using dual-band radiometers with a field of view of similar to 18.5 m(2) at a height of 4.2 m, we found a near-linear increase in fire radiative energy density over a range of fuel consumption between 0.15 and 3.25 kg m(-2). Using an integrated heat budget, we estimate that the fraction of total theoretical combustion energy density radiated from the plot averaged 0.17, the fraction of latent energy transported in the plume averaged 0.08, and the fraction accounted for by the combination of fire convective energy transport and soil heating averaged 0.72. Future work will require, at minimum, instantaneous and time-integrated estimates of energy transported by radiation, convection and soil heating across a range of fuels.
C1 [Kremens, R. L.; Bova, A. S.] Rochester Inst Technol, Ctr Imaging Sci, Rochester, NY 14623 USA.
[Dickinson, M. B.; Bova, A. S.] US Forest Serv, No Res Stn, Delaware, OH 43015 USA.
RP Kremens, RL (reprint author), Rochester Inst Technol, Ctr Imaging Sci, 54 Lomb Mem Dr, Rochester, NY 14623 USA.
EM kremens@cis.rit.edu
OI Dickinson, Matthew/0000-0003-3635-1219
FU National Fire Plan; Joint Fire Science Program
FX We thank the staff at the Vinton Furnace State Experimental Forest
(especially David Hosack, Bill Borovicka and Levi Miller) for collecting
and preparing the fuels, setting up the experimental plots and
conducting the experimental burns. Two anonymous reviewers provided
incisive and singularly useful feedback on the manuscript. This study
was supported by the National Fire Plan and Joint Fire Science Program.
NR 32
TC 20
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U1 0
U2 9
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 6
BP 722
EP 730
DI 10.1071/WF10143
PG 9
WC Forestry
SC Forestry
GA 003ZY
UT WOS:000308651100008
ER
PT J
AU Prestemon, JP
Chas-Amil, ML
Touza, JM
Goodrick, SL
AF Prestemon, Jeffrey P.
Chas-Amil, Maria L.
Touza, Julia M.
Goodrick, Scott L.
TI Forecasting intentional wildfires using temporal and spatiotemporal
autocorrelations
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE arrest; arson; autoregressive; crime; Galicia; incendiary; Poisson;
Spain; time series
ID CRIME; SPECIFICATION
AB We report daily time series models containing both temporal and spatiotemporal lags, which are applied to forecasting intentional wildfires in Galicia, Spain. Models are estimated independently for each of the 19 forest districts in Galicia using a 1999-2003 training dataset and evaluated out-of-sample with a 2004-06 dataset. Poisson autoregressive models of order P - PAR(P) models - significantly out-perform competing alternative models over both in-sample and out-of-sample datasets, reducing out-of-sample root-mean-squared errors by an average of 15%. PAR(P) and static Poisson models included covariates deriving from crime theory, including the temporal and spatiotemporal autoregressive time series components. Estimates indicate highly significant autoregressive components, lasting up to 3 days, and spatiotemporal autoregression, lasting up to 2 days. Models also applied to predict the effect of increased arrest rates for illegal intentional firesetting indicate that the direct long-run effect of an additional firesetting arrest, summed across forest districts in Galicia, is -139.6 intentional wildfires, equivalent to a long-run elasticity of -0.94.
C1 [Prestemon, Jeffrey P.] US Forest Serv, USDA, So Res Stn, Res Triangle Pk, NC 27709 USA.
[Chas-Amil, Maria L.] Univ Santiago de Compostela, Dept Quantitat Econ, E-15782 Santiago De Compostela, Spain.
[Touza, Julia M.] Univ Vigo, Dept Appl Econ, E-36310 Vigo, Spain.
[Goodrick, Scott L.] US Forest Serv, USDA, So Res Stn, Athens, GA 30602 USA.
RP Prestemon, JP (reprint author), US Forest Serv, USDA, So Res Stn, POB 12254, Res Triangle Pk, NC 27709 USA.
EM jprestemon@fs.fed.us
OI Chas-Amil, Maria Luisa/0000-0001-7605-0424
FU Xunta de Galicia [09SEC011201PR]
FX This work was partly funded by Xunta de Galicia (Project 09SEC011201PR).
The authors are thankful to the Spanish Forest Service, Conselleria do
Medio Rural (Xunta de Galicia) and AEMet (Agencia Estatal de
Meteorologia) for providing the forest fires and climatic databases. We
are also grateful to Laboratorio de Criminalistica-Zona Guardia Civil de
Galicia, particularly to Jesus Ponte Pintor, for facilitating arrest
information and useful discussion. Finally, we thank Dr Pilar Martin,
Douglas Thomas and three anonymous reviewers for their helpful
suggestions and comments on previous versions of this article.
NR 36
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U1 1
U2 18
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 6
BP 743
EP 754
DI 10.1071/WF11049
PG 12
WC Forestry
SC Forestry
GA 003ZY
UT WOS:000308651100010
ER
PT J
AU Jakes, PJ
Langer, ER
AF Jakes, Pamela J.
Langer, E. R. (Lisa)
TI The adaptive capacity of New Zealand communities to wildfire
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE community recovery; community response; resilience; vulnerability
ID WILDLAND-URBAN INTERFACE; RODEO-CHEDISKI FIRE; SOCIAL VULNERABILITY;
RESILIENCE; EVACUATION; MANAGEMENT; DISASTERS; BEHAVIOR; CLIMATE; PLACE
AB When we think of natural disasters in New Zealand, we tend to think of earthquakes or volcanic eruptions. However, a series of events is placing New Zealand communities at greater risk of wildfire. In a case study of a rural New Zealand community that experienced wildfire, process elements such as networks and relationships among locals, development and application of local knowledge and experience, and access to and application of expert knowledge and institutional capacity helped build adaptive capacity for disasters.
C1 [Jakes, Pamela J.] US Forest Serv, USDA, No Res Stn, St Paul, MN 55108 USA.
[Langer, E. R. (Lisa)] Scion, Christchurch 8041, New Zealand.
RP Jakes, PJ (reprint author), US Forest Serv, USDA, No Res Stn, 1992 Folwell Ave, St Paul, MN 55108 USA.
EM pjakes@fs.fed.us; lisa.langer@scionresearch.com
FU Scion's Rural Fire Research Group through Ministry of Science and
Innovation [C04X0403]; Scion's Rural Fire Research Group through rural
fire sector in New Zealand; USDA Forest Service Northern Research
Station
FX The research was financially supported by Scion's Rural Fire Research
Group through funding from the Ministry of Science and Innovation
(formerly Foundation for Research, Science and Technology) (contract
C04X0403) and the rural fire sector in New Zealand, and the National
Fire Plan through the USDA Forest Service Northern Research Station. The
authors thank the Mount Somers community for their willingness to
participate and their hospitality during interviews, and Grant Pearce
(Scion), Tony Teeling (DOC) and Don Geddes (ADC) for reviewing earlier
versions of this manuscript.
NR 67
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PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 6
BP 764
EP 772
DI 10.1071/WF11086
PG 9
WC Forestry
SC Forestry
GA 003ZY
UT WOS:000308651100012
ER
PT J
AU Sell, KM
Livingston, B
AF Sell, Katie M.
Livingston, Bequi
TI Mid-season physical fitness profile of interagency hotshot firefighters
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE hotshot crews; training programs; wildland firefighters
ID WILDLAND FIREFIGHTERS; RELIABILITY; TESTS
AB The purpose of this study was to generate a physical fitness profile of an interagency hotshot crew mid-way through the wildland fire season. Twenty interagency hotshot crew firefighters completed measures of body composition, aerobic fitness, hamstring flexibility, muscular strength, explosive strength and muscular endurance. Firefighters exhibited 12.9 +/- 2.3% body fat, scored 9.4 +/- 0.4 min on the 1.5-mile (2.41 km) run, 48.8 +/- 5.3 cm on the sit-and-reach test, 63.7 +/- 8.2 kg and 58.7 +/- 7.6 kg for right- and left-hand grip strength, and 55.9 +/- 9.9 cm on the vertical jump. Firefighters scored 45 +/- 12 for push-ups, 60 +/- 6 for sit-ups and 13 +/- 4 for pull-ups. All fitness scores were at or above average compared with sex- and age-corrected norms, and interagency hotshot crew-specific recommendations for completion of the 1.5-mile run, push-up, sit-up and pull-up tests. Although these data provide a cross-sectional gauge of mid-season fitness parameters, it is unclear how the occupational stresses of the job alter common measures of fitness in interagency hotshot crews. Future research may help highlight seasonal fluctuations in physical fitness, and the effect of physical fitness training on fitness parameters throughout the fire season.
C1 [Sell, Katie M.] Hofstra Univ, Dept Hlth Profess & Kinesiol, Hempstead, NY 11549 USA.
[Livingston, Bequi] US Forest Serv, USDA, SW Reg Off, Albuquerque, NM 87102 USA.
RP Sell, KM (reprint author), Hofstra Univ, Dept Hlth Profess & Kinesiol, Hempstead, NY 11549 USA.
EM Katie.Sell@hofstra.edu
NR 40
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U1 1
U2 8
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 6
BP 773
EP 777
DI 10.1071/WF11071
PG 5
WC Forestry
SC Forestry
GA 003ZY
UT WOS:000308651100013
ER
PT J
AU Rader, AJ
Yennamalli, RM
Harter, AK
Sen, TZ
AF Rader, A. J.
Yennamalli, Ragothaman M.
Harter, Andrew K.
Sen, Taner Z.
TI A rigid network of long-range contacts increases thermostability in a
mutant endoglucanase
SO JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
LA English
DT Article
DE network models; rigidity; cooperativity; contact order; thermostability;
endoglucanase
ID ENHANCING PROTEIN THERMOSTABILITY; ALLOSTERIC MECHANISM;
MOLECULAR-DYNAMICS; THERMAL-STABILITY; FLEXIBILITY; PREDICTIONS;
ADAPTATION; IDENTIFICATION; RHODOPSIN; EVOLUTION
AB Thermodynamic stability of a protein at elevated temperatures is a key factor for thermostable enzymes to catalyze their specific reactions. Yet our understanding of biological determinants of thermostability is far from complete. Many different atomistic factors have been suggested as possible means for such proteins to preserve their activity at high temperatures. Among these factors are specific local interatomic interactions or enrichment of specific amino acid types. The case of glycosyl hydrolase family endoglucanase of Trichoderma reesei defies current hypotheses for thermostability because a single mutation far from the active site (A35 V) converts this mesostable protein into a thermostable protein without significant change in the protein structure. This substantial change in enzymatic activity cannot be explained on the basis of local intramolecular interactions alone. Here we present a more global view of the induced thermostability and show that the A35V mutation affects the underlying structural rigidity of the whole protein via a number of long-range, non-local interactions. Our analysis of this structure reveals a precisely tuned, rigid network of atomic interactions. This cooperative, allosteric effect promotes the transformation of this mesostable protein into a thermostable one.
C1 [Rader, A. J.; Harter, Andrew K.] Indiana Univ Purdue Univ, Dept Phys, Indianapolis, IN 46202 USA.
[Yennamalli, Ragothaman M.; Sen, Taner Z.] Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA.
[Sen, Taner Z.] ARS, USDA, Corn Insects & Crop Genom Res Unit, Ames, IA 50011 USA.
[Sen, Taner Z.] Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USA.
RP Rader, AJ (reprint author), Indiana Univ Purdue Univ, Dept Phys, Indianapolis, IN 46202 USA.
EM ajrader@iupui.edu
FU Biotechnology Risk Assessment Program Competitive Grant from the USDA
National Institute of Food and Agriculture [2008-33522-04758]
FX This project is supported by the Biotechnology Risk Assessment Program
Competitive Grant no. 2008-33522-04758 from the USDA National Institute
of Food and Agriculture.
NR 51
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U1 0
U2 9
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0739-1102
J9 J BIOMOL STRUCT DYN
JI J. Biomol. Struct. Dyn.
PY 2012
VL 30
IS 6
BP 628
EP 637
DI 10.1080/07391102.2012.689696
PG 10
WC Biochemistry & Molecular Biology; Biophysics
SC Biochemistry & Molecular Biology; Biophysics
GA 010WF
UT WOS:000309124500002
PM 22731517
ER
PT J
AU Adams, RP
Wright, JW
AF Adams, Robert P.
Wright, Jessica W.
TI Alkanes and Terpenes in Wood and Leaves of Pinus jeffreyi and P.
sabiniana
SO JOURNAL OF ESSENTIAL OIL RESEARCH
LA English
DT Article
DE Pinus jeffreyi; Pinus sabiniana; wood oils; leaf oils; heptane; alkanes;
terpenes; diterpene acids
AB The wood oils of Pinus jeffreyi and P. sabiniana contain considerable amounts of heptane (76.6%, 92%), on a monoterpene basis. However, when entire wood extractables is considered, the amounts drop considerably (3.4%, 36.8%) with the major portion of the wood oils being diterpene acids. The leaf oil of P. jeffreyi is dominated by alpha-pinene (20.9%) and, a diterpene, thunbergol (9.2%) with moderate amounts of beta-pinene, delta-3-carene, limonene, beta-phellandrene, (Z)-beta-ocimene, (E)-caryophyllene, delta-cadinene and cembrene. The leaf oil of P. sabiniana is dominated by a-pinene (39.1%) with moderate amounts of beta-pinene, myrcene, limonene, beta-phellandrene, (Z)-beta-ocimene, methyl chavicol, decanal and thunbergol.
C1 [Adams, Robert P.] Baylor Univ, Dept Biol, Waco, TX 76798 USA.
[Wright, Jessica W.] USDA, Pacific SW Res Stn, Forest Serv, Davis, CA USA.
RP Adams, RP (reprint author), Baylor Univ, Dept Biol, Waco, TX 76798 USA.
EM Robert_Adams@baylor.edu
FU Baylor University
FX This research was supported in part with funds from Baylor University.
Thanks to Tonya Yanke for laboratory assistance.
NR 12
TC 1
Z9 1
U1 1
U2 8
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1041-2905
J9 J ESSENT OIL RES
JI J. Essent. Oil Res.
PY 2012
VL 24
IS 5
BP 435
EP 440
DI 10.1080/10412905.2012.703512
PG 6
WC Chemistry, Applied; Food Science & Technology
SC Chemistry; Food Science & Technology
GA 010TY
UT WOS:000309118400001
ER
PT J
AU Harizanova, V
Stoeva, A
Rector, BG
AF Harizanova, Vili
Stoeva, Atanaska
Rector, Brian G.
TI Host range testing and biology of Abia sericea (Cimbicidae), a candidate
for biological control of invasive teasels (Dipsacus spp.) in North
America
SO JOURNAL OF HYMENOPTERA RESEARCH
LA English
DT Article
DE Biological control of weeds; host specificity; parthenogenesis; sawfly;
Symphyta
ID LACINIATUS L. DIPSACACEAE; RECTOR ACARI ERIOPHYOIDEA; UNITED-STATES;
ERIOPHYIDAE; PLANTS; TARGET
AB Invasive teasels (Dipsacus spp., Dipsacaceae) are widespread in the USA, being present in 43 states and listed as noxious in five. The cimbicid sawfly Abia sericea (Linne, 1767) is under evaluation as a potential agent for classical biological control of teasels. The host range, biology, and life history of this insect were studied under laboratory conditions and in common garden experiments from 2006-2010 at the Agricultural University of Plovdiv, Bulgaria in order to determine if this biocontrol candidate justified the expense of further testing under quarantine conditions in the USA. In the laboratory, potted plants from twelve plant species belonging to seven families were tested in choice tests of oviposition and feeding. Eggs were laid only on D. laciniatus and D. fullonum plants with only one exception, on Valeriana officinalis, although the larvae that hatched from the latter did not feed on that plant. Larval feeding was observed only on D. laciniatus, Knautia arvensis, and Scabiosa ochroleuca, all in the family Dipsacaceae, which has no species native to the New World nor any of economic importance. In common garden tests into which adults and third- and fourth-instar larvae were released in separate tests, eggs were laid and larvae fed only on D. laciniatus. The results of these experiments indicate that A. sericea has a narrow host range, most likely limited to Dipsacus species, and a few other Dipsacaceae and that further pre-release studies in a US quarantine are warranted.
C1 [Rector, Brian G.] ARS, USDA, GBRRU, Reno, NV 89512 USA.
[Harizanova, Vili; Stoeva, Atanaska] Univ Agr, Plovdiv 4000, Bulgaria.
RP Rector, BG (reprint author), ARS, USDA, GBRRU, 920 Valley Rd, Reno, NV 89512 USA.
EM brian.rector@ars.usda.gov
NR 22
TC 2
Z9 2
U1 0
U2 9
PU PENSOFT PUBL
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1070-9428
EI 1314-2607
J9 J HYMENOPT RES
JI J. Hymenopt. Res.
PY 2012
VL 28
BP 1
EP 11
DI 10.3897/JHR.28.3044
PG 11
WC Entomology
SC Entomology
GA 012OB
UT WOS:000309244800001
ER
PT J
AU Seltmann, KC
Yoder, MJ
Miko, I
Forshages, M
Bertone, MA
Agosti, D
Austin, AD
Balhoff, JP
Borowiec, ML
Brady, SG
Broad, GR
Brothers, DJ
Burks, RA
Buffington, ML
Campbell, HM
Dew, KJ
Ernst, AE
Fernandez-Triana, JL
Gates, MW
Gibson, GAP
Jennings, JT
Johnson, NE
Karlsson, D
Kawada, R
Krogmann, L
Kula, RR
Mullins, PL
Ohl, M
Rasmussen, C
Ronquist, F
Schulmeister, S
Sharkey, MJ
Talamask, E
Tucker, E
Vilhelmsen, L
Ward, PS
Wharton, RA
Deans, AR
AF Seltmann, Katja C.
Yoder, Matthew J.
Miko, Istvan
Forshages, Mattias
Bertone, Matthew A.
Agosti, Donat
Austin, Andrew D.
Balhoff, James P.
Borowiec, Marek L.
Brady, Sean G.
Broad, Gavin R.
Brothers, Denis J.
Burks, Roger A.
Buffington, Matthew L.
Campbell, Heather M.
Dew, Kelly J.
Ernst, Andrew E.
Fernandez-Triana, Jose L.
Gates, Michael W.
Gibson, Gary A. P.
Jennings, John T.
Johnson, Norman E.
Karlsson, Dave
Kawada, Ricardo
Krogmann, Lars
Kula, Robert R.
Mullins, Patricia L.
Ohl, Michael
Rasmussen, Claus
Ronquist, Fredrik
Schulmeister, Susanne
Sharkey, Michael J.
Talamask, Elijah
Tucker, Erika
Vilhelmsen, Lars
Ward, Philip S.
Wharton, Robert A.
Deans, Andrew R.
TI A hymenopterists' guide to the Hymenoptera Anatomy Ontology: utility,
clarification, and future directions
SO JOURNAL OF HYMENOPTERA RESEARCH
LA English
DT Article
DE URI; morphology; biodiversity informatics
ID PHYLOGENETIC SIGNIFICANCE; HOMOLOGY; MORPHOLOGY; INSECTA; GENUS;
PLATYGASTROIDEA; DIAPRIIDAE; GENITALIA; REVISION; MESOSOMA
AB Hymenoptera exhibit an incredible diversity of phenotypes, the result of similar to 240 million years of evolution and the primary subject of more than 250 years of research. Here we describe the history, development, and utility of the Hymenoptera Anatomy Ontology (HAO) and its associated applications. These resources are designed to facilitate accessible and extensible research on hymenopteran phenotypes. Outreach with the hymenopterist community is of utmost importance to the HAO project, and this paper is a direct response to questions that arose from project workshops. In a concerted attempt to surmount barriers of understanding, especially regarding the format, utility, and development of the HAO, we discuss the roles of homology, "preferred terms", and "structural equivalency". We also outline the use of Universal Resource Identifiers (URIs) and posit that they are a key element necessary for increasing the objectivity and repeatability of science that references hymenopteran anatomy. Pragmatically, we detail a mechanism (the "URI table") by which authors can use URIs to link their published text to the HAO, and we describe an associated tool (the "Analyzer") to derive these tables. These tools, and others, are available through the HAO Portal website (http://portal.hymao.org). We conclude by discussing the future of the HAO with respect to digital publication, cross-taxon ontology alignment, the advent of semantic phenotypes, and community-based curation.
C1 [Deans, Andrew R.] Ohio State Univ, Dept Evolut Ecol & Organismal Biol, Columbus, OH 43212 USA.
[Seltmann, Katja C.; Yoder, Matthew J.; Miko, Istvan; Bertone, Matthew A.] N Carolina State Univ, Dept Entomol, NCSU Insect Museum, Raleigh, NC 27695 USA.
[Seltmann, Katja C.] Amer Museum Nat Hist, New York, NY 10024 USA.
[Yoder, Matthew J.] Prairie Res Inst, Champaign, IL 61820 USA.
[Miko, Istvan] Penn State Univ, Dept Entomol, University Pk, PA 16802 USA.
[Forshages, Mattias] Nat Hist Riksmuseet, Dept Entomol, SE-10405 Stockholm, Sweden.
[Agosti, Donat] Plazi, CH-3007 Bern, Switzerland.
[Agosti, Donat] Burgergemeinde Bern, Nat Hist Museum, CH-3005 Bern, Switzerland.
[Austin, Andrew D.] Univ Adelaide, Australian Ctr Evolutionary Biol, Adelaide, SA 5005, Australia.
[Austin, Andrew D.] Univ Adelaide, Sch Earth & Environm Sci, Adelaide, SA 5005, Australia.
[Balhoff, James P.] Natl Evolutionary Synth Ctr, Durham, NC 27705 USA.
[Balhoff, James P.] Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA.
[Borowiec, Marek L.] Univ Calif Davis, Dept Entomol, Davis, CA 95616 USA.
[Brady, Sean G.] Smithsonian Inst, Natl Museum Nat Hist, Dept Entomol, Washington, DC 20013 USA.
[Broad, Gavin R.] Nat Hist Museum, Dept Entomol, London SW7 5BD, England.
[Brothers, Denis J.] Univ KwaZulu Natal, Sch Life Sci, ZA-3209 Pietermaritzburg, South Africa.
[Buffington, Matthew L.] ARS, Systemat Entomol Lab, USDA, NMNH, Washington, DC 20003 USA.
[Gibson, Gary A. P.] AAFC, Canadian Natl Collect Insects Arachnids & Nematod, Ottawa, ON K1A 0C6, Canada.
[Karlsson, Dave] Stn Linne, S-38693 Farjestaden, Sweden.
[Kawada, Ricardo] Univ Sao Paulo, Museu Zool, BR-04263000 Sao Paulo, Brazil.
[Krogmann, Lars] State Museum Nat Hist, D-70191 Stuttgart, Germany.
[Ohl, Michael] Humboldt Univ, Museum Nat Kunde, Leibniz Inst Evolut & Biodiversitaetsforsch, D-10115 Berlin, Germany.
[Rasmussen, Claus] Aarhus Univ, Dept Biosci, DK-8000 Aarhus C, Denmark.
[Ronquist, Fredrik] Swedish Museum Nat Hist, Dept Biodivers Informat, SE-18450 Stockholm, Sweden.
[Schulmeister, Susanne] Univ Munich LMU, Dept Biol 2, D-82152 Planegg Martinsried, Germany.
[Sharkey, Michael J.; Tucker, Erika] Univ Kentucky, Dept Entomol, Lexington, KY 40546 USA.
[Vilhelmsen, Lars] Univ Copenhagen, Nat Hist Museum Denmark, DK-2100 Copenhagen, Denmark.
[Wharton, Robert A.] Texas A&M Univ, Dept Entomol, College Stn, TX 77843 USA.
RP Deans, AR (reprint author), Ohio State Univ, Dept Evolut Ecol & Organismal Biol, 1315 Kinnear Rd, Columbus, OH 43212 USA.
EM adeans@gmail.com
RI Krogmann, Lars/C-7209-2008; Vilhelmsen, Lars/A-3396-2013; Research,
NRM-BIG/F-2603-2013; Ohl, Michael/G-5723-2013; Ronquist,
Fredrik/Q-2013-2015; Rasmussen, Claus/J-6714-2012;
OI Deans, Andrew/0000-0002-2119-4663; Vilhelmsen, Lars/0000-0002-5593-5722;
Rasmussen, Claus/0000-0003-1529-6548; Johnson, Norman
F./0000-0003-1691-5187; Dew-Budd, Kelly/0000-0003-3791-2241; Balhoff,
James/0000-0002-8688-6599
FU U.S. National Science Foundation [DBI-0850223, DEB-0842289];
Encyclopedia of Life's Biodiversity Synthesis Center (BioSynC);
Phenotype Research Coordination Network [NSF DEB-0956049]
FX This work was made possible by the U.S. National Science Foundation,
grants DBI-0850223 and DEB-0842289, by a grant from the Encyclopedia of
Life's Biodiversity Synthesis Center (BioSynC), and by the Phenotype
Research Coordination Network (NSF DEB-0956049). USDA is an equal
opportunity provider and employer.
NR 48
TC 25
Z9 25
U1 0
U2 16
PU PENSOFT PUBL
PI SOFIA
PA 12 PROF GEORGI ZLATARSKI ST, SOFIA, 1700, BULGARIA
SN 1070-9428
EI 1314-2607
J9 J HYMENOPT RES
JI J. Hymenopt. Res.
PY 2012
VL 27
BP 67
EP 88
DI 10.3897/JHR.27.2961
PG 22
WC Entomology
SC Entomology
GA 012OA
UT WOS:000309244700004
ER
PT J
AU Wheeler, Q
Bourgoin, T
Coddington, J
Gostony, T
Hamilton, A
Larimer, R
Polaszek, A
Schauff, M
Solis, MA
AF Wheeler, Quentin
Bourgoin, Thierry
Coddington, Jonathan
Gostony, Timothy
Hamilton, Andrew
Larimer, Roy
Polaszek, Andrew
Schauff, Michael
Solis, M. Alma
TI Nomenclatural benchmarking: the roles of digital typification and
telemicroscopy
SO ZOOKEYS
LA English
DT Article
DE Types; typification; digital imaging; biodiversity informatics;
taxonomy; nomenclature; natural history museums
AB Nomenclatural benchmarking is the periodic realignment of species names with species theories and is necessary for the accurate and uniform use of Linnaean binominals in the face of changing species limits. Gaining access to types, often for little more than a cursory examination by an expert, is a major bottleneck in the advance and availability of biodiversity informatics. For the nearly two million described species it has been estimated that five to six million name-bearing type specimens exist, including those for synonymized binominals. Recognizing that examination of types in person will remain necessary in special cases, we propose a four-part strategy for opening access to types that relies heavily on digitization and that would eliminate much of the bottleneck: (1) modify codes of nomenclature to create registries of nomenclatural acts, such as the proposed ZooBank, that include a requirement for digital representations (e-types) for all newly described species to avoid adding to backlog; (2) an "r" strategy that would engineer and deploy a network of automated instruments capable of rapidly creating 3-D images of type specimens not requiring participation of taxon experts; (3) a "K" strategy using remotely operable microscopes to engage taxon experts in targeting and annotating informative characters of types to supplement and extend information content of rapidly acquired e-types, a process that can be done on an as-needed basis as in the normal course of revisionary taxonomy; and (4) creation of a global e-type archive associated with the commissions on nomenclature and species registries providing one-stop-shopping for e-types. We describe a first generation implementation of the "K" strategy that adapts current technology to create a network of Remotely Operable Benchmarkers Of Types (ROBOT) specifically engineered to handle the largest backlog of types, pinned insect specimens. The three initial instruments will be in the Smithsonian Institution(Washington, DC), Natural History Museum (London), and Museum National d'Histoire Naturelle (Paris), networking the three largest insect collections in the world with entomologists worldwide. These three instruments make possible remote examination, manipulation, and photography of types for more than 600,000 species. This is a cybertaxonomy demonstration project that we anticipate will lead to similar instruments for a wide range of museum specimens and objects as well as revolutionary changes in collaborative taxonomy and formal and public taxonomic education.
C1 [Wheeler, Quentin; Gostony, Timothy; Hamilton, Andrew] Arizona State Univ, Int Inst Species Explorat, Tempe, AZ 85287 USA.
[Bourgoin, Thierry] Museum Natl Hist Nat, Entomol Lab, Paris, France.
[Polaszek, Andrew] Nat Hist Museum, Dept Life Sci, London SW7 5BD, England.
[Schauff, Michael; Solis, M. Alma] USDA, Systemat Entomol Lab, Beltsville, MD 20705 USA.
[Larimer, Roy] Visionary Digital, Palmyra, VA 22963 USA.
[Coddington, Jonathan] Smithsonian Inst, Natl Museum Nat Hist, Washington, DC 20530 USA.
RP Wheeler, Q (reprint author), Arizona State Univ, Int Inst Species Explorat, Tempe, AZ 85287 USA.
EM quentin.wheeler@asu.edu
OI Bourgoin, Thierry/0000-0001-9277-2478
FU Virginia M. Ullman Foundation; International Institute for Species
Exploration; Arizona State University; Visionary Digital, Inc.; National
Science Foundation [SES-09083935]
FX Construction of a prototype of ROBOT(E) was made possible by a grant
from the Virginia M. Ullman Foundation and matching contributions from
Visionary Digital, Inc. Construction of the three final instruments was
funded by the International Institute for Species Exploration, Arizona
State University, and Visionary Digital, Inc. Andrew Hamilton's
contributions to this work were supported by the National Science
Foundation under grant number SES-09083935.
NR 17
TC 8
Z9 8
U1 0
U2 14
PU PENSOFT PUBL
PI SOFIA
PA 12 PROF GEORGI ZLATARSKI ST, SOFIA, 1700, BULGARIA
SN 1313-2989
EI 1313-2970
J9 ZOOKEYS
JI ZooKeys
PY 2012
IS 209
SI SI
BP 193
EP 202
DI 10.3897/zookeys.209.3486
PG 10
WC Zoology
SC Zoology
GA 998VC
UT WOS:000308267500015
PM 22859888
ER
PT J
AU Jones, GD
AF Jones, Gretchen D.
TI Forensic pollen geolocation techniques used to identify the origin of
boll weevil re-infestation
SO GRANA
LA English
DT Article
DE Pollen; entomopalynology; boll weevil
ID NORTHEASTERN MEXICO; DETAILED STRUCTURE; FAMILY COMPOSITAE; TRIBE
CICHORIEAE; HOST PLANTS; CURCULIONIDAE; COLEOPTERA; COTTON; MISSISSIPPI;
MORPHOLOGY
AB The boll weevil, Anthonomus grandis, entered the United States of America in the early twentieth century and became a major pest in cotton, Gossypium spp. Shortly after the passage of Tropical Storm Erin on 16 August 2007 through the South Texas/Winter Garden boll weevil eradication zone, over 150 boll weevils were captured in the Southern Rolling Plains (SRP) eradication zone that was essentially weevil-free since 2003. Pollen analyses were made of the SRP weevils and weevils collected in two suspected source zones, Cameron (Southern Blacklands eradication zone) and Uvalde (Winter Garden eradication zone). An additional examination of the palynological evidence and examination of additional pollen residue shed new light on this event and strengthens the conclusion that the Uvalde area was the source of the SRP weevils. A total of 192 pollen grains from 39 taxa were found in the SRP weevils: 1904 pollen grains from ten taxa from the Cameron weevils and 148 grains from 28 taxa in the Uvalde weevils. The SRP weevils shared 16 taxa, including Phermeranthus sp. (flameflower) with the Uvalde weevils and only five taxa with the Cameron weevils. Common taxa between SRP and Uvalde weevils and the lack of the dominant 'low spine' Asteraceae that occurred in all Cameron samples confirm that the SRP weevils originated from the South Texas/Winter Garden zone. Problems associated with this type of research are similar to those in forensic palynology. These problems include the unknown origin of the weevils, pollen contamination and care and storage of the samples.
C1 ARS, USDA, Areawide Pest Management Res Unit, College Stn, TX 77845 USA.
RP Jones, GD (reprint author), ARS, USDA, Areawide Pest Management Res Unit, College Stn, TX 77845 USA.
EM gretchen.jones@ars.usda.gov
NR 42
TC 1
Z9 1
U1 1
U2 11
PU TAYLOR & FRANCIS AS
PI OSLO
PA KARL JOHANS GATE 5, NO-0154 OSLO, NORWAY
SN 0017-3134
J9 GRANA
JI Grana
PY 2012
VL 51
IS 3
BP 206
EP 214
DI 10.1080/00173134.2012.667832
PG 9
WC Plant Sciences
SC Plant Sciences
GA 010VP
UT WOS:000309122900003
ER
PT J
AU Gireesh, T
Varghese, YA
Woeste, KE
Mercykutty, VC
Marattukalam, JG
AF Gireesh, T.
Varghese, Y. Annamma
Woeste, K. E.
Mercykutty, V. C.
Marattukalam, J. G.
TI Effect of monoclonal and assorted seedling rootstocks on long term
growth and yield of Hevea clones
SO SILVAE GENETICA
LA English
DT Article
DE Natural rubber; rootstock-scion; Hevea brasiliensis
ID RUBBER; BRASILIENSIS; SCIONS; TREE
AB Seven Hevea brasiliensis clones were evaluated on two types of rootstocks, assorted seedling rootstocks (AR) and monoclonal rootstock (MR) over 19 years. Influence of rootstock on scion growth and rubber yield was assessed based on juvenile height, circumference of the main trunk (cm), number of branches, branching height and cumulative dry rubber yield (g per tree per tapping, conventionally abbreviated gt(-1) t(-1)). Highest cumulative yield (g per tree per tapping) over the 12 years for which the trees were tapped was obtained from clone RRII 105 (MR: 1076 g per tree per tapping and AR: 497 g per tree per tapping), followed by RRII 203 (MR: 661; AR: 538), RRII 208 (MR: 477; AR: 486), RRII 118 (MR: 497; AR: 452). Gl 1 yielded the least, 219 g per tree per tapping (MR) and 378 g per tree per tapping (AR); GT1 produced 335 g per tree per tapping (MR) and 375 g per tree per tapping (AR). RRII 118 had the greatest circumference at age 19 (91.4 cm on MR) 88.8 on AR, followed by RRII 105 (MR: 87.4 cm AR: 89.2 cm) and GT 1 (MR: 88.5 cm; AR: 84.4cm). Effect of scion clone was significant (p < 0.01) only for trunk circumference at opening, but not for cumulative rubber yield at age 11 (4 years after opening) or cumulative rubber yield at age 19 (12 years after opening). Most importantly, rootstock and clone x rootstock interaction did not significantly affect rubber yield or tree circumference at any evaluation time. There was no evidence to suggest that growth and yield of clones was influenced significantly by rootstock type.
C1 [Gireesh, T.; Varghese, Y. Annamma; Mercykutty, V. C.; Marattukalam, J. G.] Rubber Res Inst India, Kottayam 686009, Kerala, India.
[Woeste, K. E.] Purdue Univ, USDA, US Forest Serv,Dept Forestry & Nat Resources, Hardwood Tree Improvement & Regenerat Ctr, W Lafayette, IN 47907 USA.
RP Gireesh, T (reprint author), Rubber Res Inst India, Kottayam 686009, Kerala, India.
EM gireesh@rubberboard.org.in
FU Rubber Board of India
FX We thank Dr. JAMES JACOB, Director of Research and former Directors of
Rubber Research Institute of India for their continuous encouragements
and support for this long term study. Cooperation extended by the
supporting staff at Central Experiment Station at Chethackal during the
whole experimental period is gratefully acknowledged. The financial
support for this study provided by the Rubber Board of India is
thankfully acknowledged.
NR 37
TC 0
Z9 0
U1 0
U2 1
PU J D SAUERLANDERS VERLAG
PI FRANKFURT
PA FINKENHOFSTRASSE 21, D-60322 FRANKFURT, GERMANY
SN 0037-5349
J9 SILVAE GENET
JI Silvae Genet.
PY 2012
VL 61
IS 1-2
BP 52
EP 57
PG 6
WC Forestry; Genetics & Heredity
SC Forestry; Genetics & Heredity
GA 983ZW
UT WOS:000307158200007
ER
PT J
AU Cornelius, ML
Williams, KS
Lovisa, MP
De Lucca, AJ
AF Cornelius, Mary L.
Williams, Kelley S.
Lovisa, Mary P.
De Lucca, Anthony J., II
TI Aggregation and Feeding Behavior of the Formosan Subterranean Termite
(Isoptera: Rhinotermitidae) on Wood Decayed by Three Species of Wood Rot
Fungi
SO SOCIOBIOLOGY
LA English
DT Article
DE Coptotermes formosanus; fungus; aggregation; consumption; decay
ID PYCNOPORUS-CINNABARINUS; COPTOTERMES-FORMOSANUS; GLOEOPHYLLUM-TRABEUM;
BROWN; RETICULITERMES; CONSUMPTION; ATTRACTANT; MECHANISM; LACCASE
AB Aggregation and feeding behavior of the Formosan subterranean termite, Coptotermes formosanus Shiraki, was evaluated on wood decayed by three species of fungus, the brown rot fungus, Gloeophyllum trabeum and two white rot fungi, Phanerochaete chrysosporium and Pycnoporus cinnibarinus. Although termites aggregated on decayed sawdust from all three species in at least some of the tests, sawdust decayed by P. chrysosporium elicited aggregation behavior by termites over the greatest range of incubation periods. In some tests, termites avoided sawdust decayed by G. trabeum. Termite feeding on blocks decayed for 90 d was significantly greater than on control blocks for all three species of fungi, despite the significantly lower decay rate of P cinnibarinus. Increasing our understanding of the interaction of termites with wood rot fungi could lead to the identification of chemicals that attract termites to bait stations.
C1 [Cornelius, Mary L.; Williams, Kelley S.; Lovisa, Mary P.; De Lucca, Anthony J., II] USDA ARS, So Reg Res Ctr, New Orleans, LA 70124 USA.
RP Cornelius, ML (reprint author), USDA ARS, So Reg Res Ctr, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM Mary.Cornelius@ars.usda.gov
NR 30
TC 0
Z9 0
U1 2
U2 8
PU CALIFORNIA STATE UNIV
PI CHICO
PA DEPT BIOL SCI, CHICO, CA 95929 USA
SN 0361-6525
J9 SOCIOBIOLOGY
JI Sociobiology
PY 2012
VL 59
IS 3
BP 667
EP 680
PG 14
WC Entomology
SC Entomology
GA 993NF
UT WOS:000307865700008
ER
PT J
AU Al-Kofahi, S
Steele, C
VanLeeuwen, D
St Hilaire, R
AF Al-Kofahi, Salman
Steele, Caiti
VanLeeuwen, Dawn
St Hilaire, Rolston
TI Mapping land cover in urban residential landscapes using very high
spatial resolution aerial photographs
SO URBAN FORESTRY & URBAN GREENING
LA English
DT Article
DE Classification; Greenspace; Remote sensing; Median income
ID REMOTE-SENSING DATA; WATER CONSERVATION; METROPOLITAN-AREA; DOMESTIC
GARDENS; IKONOS IMAGERY; GREEN SPACES; CLASSIFICATION; VEGETATION;
PHOENIX; NEIGHBORHOODS
AB Accurate information on existing residential landscapes is essential for framing ordinances and monitoring residential water use in the Urban Greenspace Ecosystem. We classified residential landscapes of New Mexico's largest city, Albuquerque, to explore the spatial distribution of residential greenspace and its composition among zip codes and median incomes. Geographic Information System (GIS) vector files including parcels, city limits, zip codes and land-use maps, were integrated with ownership information. The database was stratified by Albuquerque's 16 zip codes. Four hundred eighty residential landscapes were selected randomly for study. Very high spatial resolution (0.15 m) 2008 true color aerial photographs and the object-oriented supervised classification module in ENVI EX were used to identify residential features. Spatial and textural variables, created by image segmentation, were classified using the K-Nearest Neighbor (K-NN) algorithm embedded in ENVI EX. Classification accuracy was 89%. Larger greenspace, tree, shrub, and grass areas were in larger parcels. Landscapes in lower income groups and older zip codes include larger greenspace and tree cover because of mature tree sizes, while grass dominated landscapes of higher income groups and newer zip codes. This knowledge of residential vegetation distribution could serve as a basis for policy makers, planners, and water conservation officers wishing to enact ordinances and regulations that govern the urban residential landscape. (c) 2012 Elsevier GmbH. All rights reserved.
C1 [Al-Kofahi, Salman; St Hilaire, Rolston] New Mexico State Univ, Dept Plant & Environm Sci, MSC 3Q, Las Cruces, NM 88003 USA.
[Steele, Caiti] New Mexico State Univ, USDA ARS Jornada Expt Range, MSC 3JER, Las Cruces, NM 88003 USA.
[VanLeeuwen, Dawn] New Mexico State Univ, NMSU Agr Expt Stn, MSC 3501, Las Cruces, NM 88003 USA.
RP Al-Kofahi, S (reprint author), New Mexico State Univ, Dept Plant & Environm Sci, MSC 3Q, POB 30003, Las Cruces, NM 88003 USA.
EM slssls76@yahoo.com; caiti@nmsu.edu; vanleeuw@nmsu.edu; rsthilai@nmsu.edu
FU National Oceanic and Atmospheric Administration [GR0002372]
FX We would like to thank the National Oceanic and Atmospheric
Administration for the financial support for this work through Grant #
GR0002372 to New Mexico State University.
NR 55
TC 8
Z9 10
U1 3
U2 58
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1618-8667
J9 URBAN FOR URBAN GREE
JI Urban For. Urban Green.
PY 2012
VL 11
IS 3
BP 291
EP 301
DI 10.1016/j.ufug.2012.05.001
PG 11
WC Plant Sciences; Environmental Studies; Forestry; Urban Studies
SC Plant Sciences; Environmental Sciences & Ecology; Forestry; Urban
Studies
GA 007QB
UT WOS:000308902100007
ER
PT J
AU McElorne, AJ
Gambetta, GA
Osorio, C
Walker, MA
AF McElorne, Andrew J.
Gambetta, Greg A.
Osorio, Cecilia
Walker, M. Andrew
TI Importance of Anatomy to Hydraulic Physiology across Grapevine
Rootstocks Subjected to Drought Stress
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Meeting Abstract
C1 [McElorne, Andrew J.; Gambetta, Greg A.; Osorio, Cecilia; Walker, M. Andrew] Univ Calif Davis, Dept Viticulture & Enol, USDA ARS, Davis, CA 95616 USA.
EM ajmcelrone@ucdavis.edu
NR 0
TC 0
Z9 0
U1 1
U2 12
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 3
BP 433A
EP 433A
PG 1
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 006RV
UT WOS:000308837400023
ER
PT J
AU Cousins, P
AF Cousins, Peter
TI Hybrid and Selfed Seedling Progenies of Vitis vinifera Purpurea Grape
Segregate for Tendril Distribution
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Meeting Abstract
C1 [Cousins, Peter] ARS, USDA, Grape Genet Res Unit, Geneva, NY 14456 USA.
EM peter.cousins@ars.usda.gov
NR 0
TC 1
Z9 1
U1 0
U2 4
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 3
BP 457A
EP 457A
PG 1
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 006RV
UT WOS:000308837400111
ER
PT J
AU Shellie, K
Bowen, P
AF Shellie, Krista
Bowen, Pat
TI Berry Composition and Yield of Cabernet Sauvignon and Malbec in Response
to Water Deficit Severity
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Meeting Abstract
C1 [Shellie, Krista; Bowen, Pat] ARS, USDA, HCRL, Parma, ID 83660 USA.
EM Krista.Shellie@ars.usda.gov
NR 0
TC 0
Z9 0
U1 0
U2 4
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 3
BP 463A
EP 463A
PG 1
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 006RV
UT WOS:000308837400134
ER
PT J
AU Lee, J
Tarara, JM
AF Lee, Jungmin
Tarara, Julie M.
TI Small Differences in Temperature Interact with Solar Radiation to Alter
Anthocyanin in Grapes
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Meeting Abstract
C1 USDA ARS, Hort Crops Res Unit, Corvallis, OR USA.
USDA ARS, Hort Crops Res Unit, Parma, ID USA.
USDA ARS, Hort Crops Res Unit, Prosser, WA USA.
EM julie.tarara@ars.usda.gov
RI Lee, Jungmin/G-6555-2013
OI Lee, Jungmin/0000-0002-8660-9444
NR 0
TC 0
Z9 0
U1 0
U2 8
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 3
BP 464A
EP 464A
PG 1
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 006RV
UT WOS:000308837400138
ER
PT S
AU Ainsworth, EA
Yendrek, CR
Sitch, S
Collins, WJ
Emberson, LD
AF Ainsworth, Elizabeth A.
Yendrek, Craig R.
Sitch, Stephen
Collins, William J.
Emberson, Lisa D.
BE Merchant, SS
TI The Effects of Tropospheric Ozone on Net Primary Productivity and
Implications for Climate Change
SO ANNUAL REVIEW OF PLANT BIOLOGY, VOL 63
SE Annual Review of Plant Biology
LA English
DT Review; Book Chapter
DE global change; crop; forest; stomatal conductance; photosynthesis
ID SOUTHERN APPALACHIAN FOREST; ELEVATED ATMOSPHERIC CO2; CARBON-DIOXIDE
LEVELS; SUB-ALPINE GRASSLAND; AIR FIELD CONDITIONS; ASPEN-BIRCH FORESTS;
OPEN-TOP CHAMBERS; STOMATAL CONDUCTANCE; GENE-EXPRESSION; SURFACE OZONE
AB Tropospheric ozone (O-3) is a global air pollutant that causes billions of dollars in lost plant productivity annually. It is an important anthropogenic greenhouse gas, and as a secondary air pollutant, it is present at high concentrations in rural areas far from industrial sources. It also reduces plant productivity by entering leaves through the stomata, generating other reactive oxygen species and causing oxidative stress, which in turn decreases photosynthesis, plant growth, and biomass accumulation. The deposition of O-3 into vegetation through stomata is an important sink for tropospheric O-3 , but this sink is modified by other aspects of environmental change, including rising atmospheric carbon dioxide concentrations, rising temperature, altered precipitation, and nitrogen availability. We review the atmospheric chemistry governing tropospheric O-3 mass balance, the effects of O-3 on stomatal conductance and net primary productivity, and implications for agriculture, carbon sequestration, and climate change.
C1 [Ainsworth, Elizabeth A.; Yendrek, Craig R.] ARS, Global Change & Photosynth Res Unit, USDA, Urbana, IL 61801 USA.
[Ainsworth, Elizabeth A.] Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
[Sitch, Stephen] Univ Exeter, Dept Geog, Coll Life & Environm Sci, Exeter EX4 4RJ, Devon, England.
[Collins, William J.] Hadley Ctr, Met Off, Exeter EX1 EPB, Devon, England.
[Emberson, Lisa D.] Univ York, Stockholm Environm Inst, Dept Environm, York YO10 5DD, N Yorkshire, England.
RP Ainsworth, EA (reprint author), ARS, Global Change & Photosynth Res Unit, USDA, Urbana, IL 61801 USA.
EM lisa.ainsworth@ars.usda.gov; craig.yendrek@ars.usda.gov;
s.a.sitch@exeter.ac.uk; bill.collins@metoffice.gov.uk;
l.emberson@york.ac.uk
RI Collins, William/A-5895-2010; Yendrek, Craig/A-7126-2013; Sitch,
Stephen/F-8034-2015
OI Collins, William/0000-0002-7419-0850; Yendrek,
Craig/0000-0002-0557-325X; Sitch, Stephen/0000-0003-1821-8561
NR 165
TC 132
Z9 135
U1 16
U2 211
PU ANNUAL REVIEWS
PI PALO ALTO
PA 4139 EL CAMINO WAY, PO BOX 10139, PALO ALTO, CA 94303-0897 USA
SN 1543-5008
BN 978-0-8243-0663-2
J9 ANNU REV PLANT BIOL
JI Annu. Rev. Plant Biol.
PY 2012
VL 63
BP 637
EP 661
DI 10.1146/annurev-arplant-042110-103829
PG 25
WC Plant Sciences
SC Plant Sciences
GA BBR06
UT WOS:000307953100026
PM 22404461
ER
PT J
AU Tobin, PC
Bai, BB
Eggen, DA
Leonard, DS
AF Tobin, Patrick C.
Bai, Barry B.
Eggen, Donald A.
Leonard, Donna S.
TI The ecology, geopolitics, and economics of managing Lymantria dispar in
the United States
SO INTERNATIONAL JOURNAL OF PEST MANAGEMENT
LA English
DT Article
DE barrier zone management; biological invasions; eradication; gypsy moth;
invasive species management; Lymantria dispar; outbreak suppression;
quarantine
ID GYPSY-MOTH LEPIDOPTERA; PHEROMONE-BAITED TRAPS; BIOLOGICAL INVASIONS;
NORTH-AMERICA; ENTOMOPHAGA-MAIMAIGA; POPULATION-DENSITY; MATING SUCCESS;
GEOGRAPHICAL VARIATION; FUNGAL PATHOGEN; SEX ATTRACTANT
AB Increases in global trade and travel have resulted in a number of species being inadvertently (or, in a few cases, deliberately) introduced into new geographical locations. In most cases, there is generally a lack of information regarding a species' biology and ecology, and its potential to cause environmental and economic harm. Regardless, management decisions concerning these new species often need to be made rapidly, even in the absence of this information. The gypsy moth, Lymantria dispar (L.), is an exception insofar as it is a non-native species that, due to its considerable potential for damage, has been extensively studied and managed in the United States following its introduction in 1869. In this review, we attempt to highlight the ecology, geopolitics, and economics of managing L. dispar in the United States, integrating the lessons learned from over 100 years of research and management. In doing so, we attempt to provide a framework that could be applicable to the management of other non-native insect species, for which we often lack information upon which to develop and implement management strategies.
C1 [Tobin, Patrick C.] US Forest Serv, USDA, No Res Stn, Morgantown, WV 26505 USA.
[Bai, Barry B.] Oregon Dept Agr, Plant Div, Salem, OR 97301 USA.
[Eggen, Donald A.] Bur Forestry, Penn Dept Conservat & Nat Resources, Div Forest Pest Management, Middletown, PA 17057 USA.
[Leonard, Donna S.] US Forest Serv, USDA, Asheville, NC 28802 USA.
RP Tobin, PC (reprint author), US Forest Serv, USDA, No Res Stn, Morgantown, WV 26505 USA.
EM ptobin@fs.fed.us
NR 128
TC 17
Z9 19
U1 4
U2 45
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0967-0874
J9 INT J PEST MANAGE
JI Int. J. Pest Manage.
PY 2012
VL 58
IS 3
SI SI
BP 195
EP 210
DI 10.1080/09670874.2011.647836
PG 16
WC Entomology
SC Entomology
GA 996RZ
UT WOS:000308113300002
ER
PT J
AU Liebhold, AM
AF Liebhold, Andrew M.
TI Forest pest management in a changing world
SO INTERNATIONAL JOURNAL OF PEST MANAGEMENT
LA English
DT Article
DE biological control; biological invasions; detection; eradication; forest
health; quarantine; resistance; surveillance; silviculture
ID SPRUCE BUDWORM OUTBREAKS; BIOLOGICAL INVASIONS; SPATIAL SYNCHRONY;
INSECT OUTBREAKS; NORTH-AMERICA; GLOBAL-CHANGE; EXOTIC PEST;
NEW-ZEALAND; DYNAMICS; PLANTATIONS
AB The scope, context and science guiding forest pest management have evolved and are likely to continue changing into the future. Here, I present six areas of advice to guide practitioners in the implementation of forest pest management. First, human dimensions will continue to play a key role in most pest problems and should always be a primary consideration in management. Next, managers must recognize that it is practically impossible to use population suppression to prevent outbreaks that extend over large geographic regions. Silvicultural practices can sometimes be effective at reducing forest susceptibility to outbreaks but these methods should be based on sound science. Many of the most damaging forest pests are non-native species and minimizing the invasion problem is most effective when steps are taken early on in the invasion process. Furthermore, classical biological control and selection for host resistance are important approaches to managing established non-native pest species. Finally, plantations of exotic tree species, while often highly productive, are prone to catastrophic damage from invading pests.
C1 US Forest Serv, USDA, No Res Stn, Morgantown, WV USA.
RP Liebhold, AM (reprint author), US Forest Serv, USDA, No Res Stn, 180 Canfield St, Morgantown, WV USA.
EM aliebhold@fs.fed.us
RI Liebhold, Andrew/C-1423-2008
OI Liebhold, Andrew/0000-0001-7427-6534
NR 53
TC 16
Z9 16
U1 4
U2 29
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0967-0874
J9 INT J PEST MANAGE
JI Int. J. Pest Manage.
PY 2012
VL 58
IS 3
SI SI
BP 289
EP 295
DI 10.1080/09670874.2012.678405
PG 7
WC Entomology
SC Entomology
GA 996RZ
UT WOS:000308113300010
ER
PT J
AU Jones, SJ
Gent, DH
Pethybridge, SJ
Hay, FS
AF Jones, S. J.
Gent, D. H.
Pethybridge, S. J.
Hay, F. S.
TI Site-specific risk factors of white mould epidemics in bean (Phaseolus
vulgaris) in Tasmania, Australia
SO NEW ZEALAND JOURNAL OF CROP AND HORTICULTURAL SCIENCE
LA English
DT Article
DE disease forecasting; quantitative epidemiology
ID SCLEROTINIA STEM ROT; BLIGHT EPIDEMICS; OILSEED RAPE; DISEASE; YIELD;
MODEL; RAINFALL; TEMPERATURE; GERMINATION; PREDICTION
AB In Tasmania, Australia, if more than 5% of bean pods are affected by white mould (Sclerotinia sclerotiorum) shipments may be rejected by the processor. This standard dictates prophylactic fungicide application over flowering, although in some instances treatment may not be warranted because of low disease risk. Surveys were conducted to identify relationships among edaphic factors, weather variables, and production practices associated with white mould. Correlations were found between disease incidence and the number of apothecia, fungicide timing, and mean minimum air temperature in the 10- and 30-day periods preceding harvest. Significant differences in disease incidence also were detected among cultivars and bean canopy densities. A nonparametric discriminant analysis model based on the predictor variables of mean minimum air temperature in the 10- and 30-day periods before harvest, cultivar, bean canopy density, and fungicide application correctly predicted presence of white mould on pods in 77% of bean fields. Several factors that can be manipulated to reduce disease risks were identified.
C1 [Jones, S. J.; Hay, F. S.] Univ Tasmania, TIAR, Burnie, Tas 7320, Australia.
[Gent, D. H.] ARS, Forage Seed & Cereal Res Unit, USDA, Corvallis, OR USA.
[Gent, D. H.] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA.
[Pethybridge, S. J.] Agr Serv Pty Ltd, Bot Resources Australia, Ulverstone, Tas, Australia.
RP Hay, FS (reprint author), Univ Tasmania, TIAR, Cradle Coast Campus, Burnie, Tas 7320, Australia.
EM Frank.Hay@utas.edu.au
RI Jones, Suzie/J-2779-2013
OI Jones, Suzie/0000-0003-1014-4772
FU Vegetable Levy; Australian Commonwealth Government; USDA-ARS CRIS
[5358-21000-050-00]; University of Tasmania; Horticulture Australia
Limited [VG07126]; AusVeg [VG07126]
FX Thanks are extended to Phillip Beveridge, Phil Gardam, Thomas O'Malley,
Craig Palmer, Stacey Pilkington, Dr Jason Scott, Gordon Tuck, University
of Tasmania, for technical assistance. This project was facilitated by
Horticulture Australia Limited in partnership with AusVeg (project
number VG07126; program 2.1) and funded by the Vegetable Levy with
matching funds from the Australian Commonwealth Government, with
additional funding provided from USDA-ARS CRIS Project
5358-21000-050-00. We gratefully acknowledge the bean growers and
processors who allowed access to their fields for sampling and the
assistance of agronomists Garry McNab (Simplot Australia Pty. Ltd.) and
Darren Briggs (McCain Foods (Australia) Pty. Ltd. Travel of Dr Gent to
Australia was also partially funded by the University of Tasmania's
Visiting Scholar Program.
NR 54
TC 1
Z9 1
U1 2
U2 13
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0114-0671
J9 NEW ZEAL J CROP HORT
JI N. Z. J. Crop Hortic. Sci.
PY 2012
VL 40
IS 3
BP 147
EP 159
DI 10.1080/01140671.2011.623707
PG 13
WC Agronomy; Horticulture
SC Agriculture
GA 999FP
UT WOS:000308295100001
ER
PT J
AU Buffington, ML
van Noort, S
AF Buffington, Matthew L.
van Noort, Simon
TI Revision of the Afrotropical Oberthuerellinae (Cynipoidea, Liopteridae)
SO ZOOKEYS
LA English
DT Article
DE Africa; Afrotropical region; Cynipoidea; Hymenoptera; identification
key; Liopteridae; Madagascar; systematics
ID GALL WASP; HYMENOPTERA; CYNIPIDAE; FIGITIDAE
AB The Afrotropical Oberthuerellinae are revised, and new dichotomous and multi-entry keys to the species of Oberthuerella, Tessmannella, and Xenocynips are provided. All previously described species in these genera are redescribed; descriptions are augmented by color images of the holotype for each species. The following 11 species are described as new: Oberthuerella cyclopia Buffington & van Noort; O. eschara Buffington & van Noort; O. kibalensis van Noort & Buffington; O. pardolatus Buffington & van Noort; O. sharkeyi Buffington & van Noort; O. simba Buffington & van Noort; Tessmannella copelandi Buffington & van Noort; T. kiplingi Buffington & van Noort; T. roberti Buffington & van Noort; Xenocynips rhothion Buffington & van Noort; and X. ronquisti Buffington & van Noort. We provide identification keys to the genera and species occurring in the Afrotropical region. Online dichotomous and interactive Lucid keys to genera and species are available at http://www.waspweb.org/Cynipoidea/Keys/index.htm
C1 [Buffington, Matthew L.] USDA, Systemat Entomol Lab, Smithsonian NMNH, Washington, DC 20013 USA.
[van Noort, Simon] Iziko S African Museum, Nat Hist Dept, ZA-8000 Cape Town, South Africa.
[van Noort, Simon] Univ Cape Town, Dept Zool, ZA-7701 Rondebosch, South Africa.
RP Buffington, ML (reprint author), USDA, Systemat Entomol Lab, Smithsonian NMNH, 10th & Constitut Ave NW, Washington, DC 20013 USA.
EM matt.buffington@ars.usda.gov
RI van Noort, Simon/C-4006-2017
OI van Noort, Simon/0000-0001-6930-9741
FU Systematic Entomology Lab, USDA/ARS; National Research Foundation Italy
South-Africa [GUN 2068865]; NRF grant [GUN 61497]; World Wildlife Fund
(US)
FX MLB thanks the Systematic Entomology Lab, USDA/ARS for funding museum
research in Europe in June, 2010. SVN was funded by the National
Research Foundation Italy South-Africa agreement under Grant GUN 2068865
and NRF grant GUN 61497. The expedition to the Central African Republic
was supported by funds from the World Wildlife Fund (US). The Ugandan
Wildlife Authority and UNCST provided permits to conduct research in
Uganda. We thank Dr. Richard Bagine, Director of Research, Kenya
Wildlife Service for granting R. S. Copeland permission to sample in
Kenyan National Parks and Reserves. Dr. Helida Oyieke, Head of
Collections and Research, National Museums of Kenya, was instrumental in
granting permission to loan insects for study. We also acknowledge and
thank Deb Paul and MorphBank (http://www.morphbank.net), (Florida State
University, Tallahassee, FL), and Norm Johnson and Joe Cora of vSyslab
(Ohio State University, Columbus, OH) for technical assistance; we also
thank Joe Cora for helping to generate our distribution maps. Istvan
Miko (North Carolina State University, Raleigh, NC) helped generate the
URI table. Doug Yanega (UC Riverside, Riverside, CA) helped clarify
nomenclatural issues surrounding Oberthuerella lenticularis. David
Notton (The Natural History Museum, London), Claire Villemont (Natural
History Museum, Paris), Eliane de Conick (Africa Museum, Tervuren),
Robert Zuparko (California Academy of Arts and Science, San Francisco),
Lubomir Masner (Canadian National Insect Collection, Ottawa), and Zhiwei
Liu (Eastern Illinois University, Charleston, IL) assisted with loans
and specimen queries, and their help is greatly appreciated. Stewart
McKamey, Thomas J. Henry (Systematic Entomology Laboratory, ARS-USDA,
Washington, DC), George Melika (Plant Pest Laboratory, Tanakajd,
Hungary), Johan Liljeblad (Swedish Species Information Centre, Uppsala,
Sweden), Istvan Miko and one additional anonymous reviewer, greatly
improved earlier versions of this manuscript. USDA is an equality
opportunity employer and provider.
NR 26
TC 3
Z9 3
U1 0
U2 1
PU PENSOFT PUBL
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1313-2989
EI 1313-2970
J9 ZOOKEYS
JI ZooKeys
PY 2012
IS 202
SI SI
BP 1
EP 154
DI 10.3897/zookeys.202.2136
PG 154
WC Zoology
SC Zoology
GA 000HU
UT WOS:000308378100001
PM 22773909
ER
PT J
AU Xia, R
Zhu, H
An, YQ
Beers, EP
Liu, ZR
AF Xia, Rui
Zhu, Hong
An, Yong-qiang
Beers, Eric P.
Liu, Zongrang
TI Apple miRNAs and tasiRNAs with novel regulatory networks
SO GENOME BIOLOGY
LA English
DT Article
ID TRANS-ACTING SIRNAS; R2R3-MYB GENE FAMILY; DOUBLE-STRANDED-RNA;
ARABIDOPSIS-THALIANA; TRANSCRIPTION FACTORS; PLANT MICRORNAS; FUNCTIONAL
DIVERSIFICATION; INTERFERING RNA; TARGETS; DNA
AB Background: MicroRNAs (miRNAs) and their regulatory functions have been extensively characterized in model species but whether apple has evolved similar or unique regulatory features remains unknown.
Results: We performed deep small RNA-seq and identified 23 conserved, 10 less-conserved and 42 apple-specific miRNAs or families with distinct expression patterns. The identified miRNAs target 118 genes representing a wide range of enzymatic and regulatory activities. Apple also conserves two TAS gene families with similar but unique trans-acting small interfering RNA (tasiRNA) biogenesis profiles and target specificities. Importantly, we found that miR159, miR828 and miR858 can collectively target up to 81 MYB genes potentially involved in diverse aspects of plant growth and development. These miRNA target sites are differentially conserved among MYBs, which is largely influenced by the location and conservation of the encoded amino acid residues in MYB factors. Finally, we found that 10 of the 19 miR828-targeted MYBs undergo small interfering RNA (siRNA) biogenesis at the 3' cleaved, highly divergent transcript regions, generating over 100 sequence-distinct siRNAs that potentially target over 70 diverse genes as confirmed by degradome analysis.
Conclusions: Our work identified and characterized apple miRNAs, their expression patterns, targets and regulatory functions. We also discovered that three miRNAs and the ensuing siRNAs exploit both conserved and divergent sequence features of MYB genes to initiate distinct regulatory networks targeting a multitude of genes inside and outside the MYB family.
C1 [Xia, Rui; Zhu, Hong; Beers, Eric P.; Liu, Zongrang] Virginia Polytech Inst & State Univ, Dept Hort, Blacksburg, VA 24061 USA.
[Xia, Rui] Virginia Polytech Inst & State Univ, Dept Hort, Alson H Smith Agr Res & Extens Ctr, Winchester, VA 22602 USA.
[Xia, Rui; Zhu, Hong; Liu, Zongrang] ARS, Appalachian Fruit Res Stn, USDA, Kearneysville, WV 25430 USA.
[An, Yong-qiang] ARS, Plant Genet Res Unit, USDA, Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
RP Liu, ZR (reprint author), Virginia Polytech Inst & State Univ, Dept Hort, Blacksburg, VA 24061 USA.
EM Zongrang.liu@ars.usda.gov
OI Xia, Rui/0000-0003-2409-1181
NR 79
TC 89
Z9 306
U1 7
U2 57
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1474-760X
J9 GENOME BIOL
JI Genome Biol.
PY 2012
VL 13
IS 6
AR R47
DI 10.1186/gb-2012-13-6-r47
PG 18
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA 002QD
UT WOS:000308546300007
PM 22704043
ER
PT J
AU Feng, XM
Sun, G
Fu, BJ
Su, CH
Liu, Y
Lamparski, H
AF Feng, X. M.
Sun, G.
Fu, B. J.
Su, C. H.
Liu, Y.
Lamparski, H.
TI Regional effects of vegetation restoration on water yield across the
Loess Plateau, China
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID MEAN ANNUAL EVAPOTRANSPIRATION; AVERAGE ANNUAL STREAMFLOW; CLIMATE
VARIABILITY; LAND-USE; AFFORESTATION; CATCHMENT; IMPACTS; SPLINES;
RUNOFF; SCALE
AB The general relationships between vegetation and water yield under different climatic regimes are well established at a small watershed scale in the past century. However, applications of these basic theories to evaluate the regional effects of land cover change on water resources remain challenging due to the complex interactions of vegetation and climatic variability and hydrologic processes at the large scale. The objective of this study was to explore ways to examine the spatial and temporal effects of a large ecological restoration project on water yield across the Loess Plateau region in northern China. We estimated annual water yield as the difference between precipitation input and modelled actual evapotranspiration (ET) output. We constructed a monthly ET model using published ET data derived from eddy flux measurements and watershed streamflow data. We validated the ET models at a watershed and regional levels. The model was then applied to examine regional water yield under land cover change and climatic variability during the implementation of the Grain-for-Green (GFG) project during 1999-2007. We found that water yield in 38% of the Loess Plateau area might have decreased (1-48 mm per year) as a result of land cover change alone. However, combined with climatic variability, 37% of the study area might have seen a decrease in water yield with a range of 1-54 mm per year, and 35% of the study area might have seen an increase with a range of 1-10 mm per year. Across the study region, climate variability masked or strengthened the water yield response to vegetation restoration. The absolute annual water yield change due to vegetation restoration varied with precipitation regimes with the highest in wet years, but the relative water yield changes were most pronounced in dry years. We concluded that the effects of land cover change associated with ecological restoration varied greatly over time and space and were strongly influenced by climatic variability in the arid region. The current regional vegetation restoration projects have variable effects on local water resources across the region. Land management planning must consider the influences of spatial climate variability and long-term climate change on water yield to be more effective for achieving environmental sustainability.
C1 [Feng, X. M.; Fu, B. J.; Su, C. H.; Lamparski, H.] Chinese Acad Sci, State Key Lab Urban & Reg Ecol, Res Ctr Ecoenvironm Sc, Beijing 100085, Peoples R China.
[Sun, G.] US Forest Serv, Eastern Forest Environm Threat Assessment Ctr, USDA, So Res Stn, Raleigh, NC 27606 USA.
[Liu, Y.] Beijing Normal Univ, Coll Global Change & Earth Syst, Beijing 100875, Peoples R China.
RP Feng, XM (reprint author), Chinese Acad Sci, State Key Lab Urban & Reg Ecol, Res Ctr Ecoenvironm Sc, Beijing 100085, Peoples R China.
EM fengxm@rcees.ac.cn
RI Fu, Bojie/B-1493-2009
FU National Basic Research Priorities Programme of China [2009CB421104];
National Natural Science Foundation of China [40801070]; CAS/SAFEA
International Partnership Programme for Innovation Research Teams of
"Ecosystem Processes and Services"; USDA Forest Service Eastern Forest
Environmental Threat Assessment Center
FX The research was supported by National Basic Research Priorities
Programme of China (No. 2009CB421104), National Natural Science
Foundation of China (No. 40801070), the CAS/SAFEA International
Partnership Programme for Innovation Research Teams of "Ecosystem
Processes and Services". GIMMS AVHRR-NDVI data and SPOT VEGETATION data
were provided from Environmental and Ecological Science Data Center for
West China, (http://westdc.westgis.ac.cn). Partial support also comes
from the USDA Forest Service Eastern Forest Environmental Threat
Assessment Center. Also we would like to thank two anonymous reviewers
for their comments and suggestions that helped improve the quality of
this paper.
NR 40
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Z9 36
U1 6
U2 74
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 8
BP 2617
EP 2628
DI 10.5194/hess-16-2617-2012
PG 12
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 998ND
UT WOS:000308245800016
ER
PT J
AU Caldwell, PV
Sun, G
McNulty, SG
Cohen, EC
Myers, JAM
AF Caldwell, P. V.
Sun, G.
McNulty, S. G.
Cohen, E. C.
Myers, J. A. Moore
TI Impacts of impervious cover, water withdrawals, and climate change on
river flows in the conterminous US
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID UNITED-STATES; LAND-USE; MODEL; BIODIVERSITY; MANAGEMENT; RESOURCES;
CIRCULATION; HYDROLOGY; DAMS
AB Rivers are essential to aquatic ecosystem and societal sustainability, but are increasingly impacted by water withdrawals, land-use change, and climate change. The relative and cumulative effects of these stressors on continental river flows are relatively unknown. In this study, we used an integrated water balance and flow routing model to evaluate the impacts of impervious cover and water withdrawal on river flow across the conterminous US at the 8-digit Hydrologic Unit Code (HUC) watershed scale. We then estimated the impacts of projected change in withdrawals, impervious cover, and climate under the B1 "Low" and A2 "High" emission scenarios on river flows by 2060. Our results suggest that compared to no impervious cover, 2010 levels of impervious cover increased river flows by 9.9% on average with larger impacts in and downstream of major metropolitan areas. In contrast, compared to no water withdrawals, 2005 withdrawals decreased river flows by 1.4% on average with larger impacts in heavily irrigated arid regions of Western US. By 2060, impacts of climate change were predicted to overwhelm the potential gain in river flow due to future changes in impervious cover and add to the potential reduction in river flows from withdrawals, decreasing mean annual river flows from 2010 levels by 16% on average. However, increases in impervious cover by 2060 may offset the impact of climate change during the growing season in some watersheds. Large water withdrawals will aggravate the predicted impact of climate change on river flows, particularly in the Western US. Predicted ecohydro-logical impacts of land cover, water withdrawal, and climate change will likely include alteration of the terrestrial water balance, stream channel habitat, riparian and aquatic community structure in snow-dominated basins, and fish and mussel extirpations in heavily impacted watersheds. These changes may also require new infrastructure to support increasing anthropogenic demand for water, relocation of agricultural production, and/or water conservation measures. Given that the impacts of land use, withdrawals and climate may be either additive or offsetting in different magnitudes, integrated and spatially explicit modeling and management approaches are necessary to effectively manage water resources for aquatic life and human use in the face of global change.
C1 [Caldwell, P. V.; Sun, G.; McNulty, S. G.; Cohen, E. C.; Myers, J. A. Moore] US Forest Serv, USDA, Eastern Forest Environm Threat Assessment Ctr, Raleigh, NC USA.
RP Caldwell, PV (reprint author), US Forest Serv, USDA, Eastern Forest Environm Threat Assessment Ctr, Raleigh, NC USA.
EM pcaldwell02@fs.fed.us
FU USDA Forest Service Eastern Forest Environmental Threat Assessment
Center; National Science Foundation grant Decadal and Regional Climate
Prediction using Earth System Models (EaSM), program solicitation [NSF
10-554, 1049200]
FX This work was supported by the USDA Forest Service Eastern Forest
Environmental Threat Assessment Center, and National Science Foundation
grant Decadal and Regional Climate Prediction using Earth System Models
(EaSM), program solicitation NSF 10-554 (Award no. 1049200). We also
wish to thank Victor Koren of the NOAA National Weather Service for
providing SAC-SMA soil parameter input data, and the two anonymous
reviewers and editor whose comments improved the quality and scientific
impact of this manuscript.
NR 70
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Z9 26
U1 1
U2 57
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
EI 1607-7938
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 8
BP 2839
EP 2857
DI 10.5194/hess-16-2839-2012
PG 19
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 998ND
UT WOS:000308245800032
ER
PT J
AU Anderson, WB
Zaitchik, BF
Hain, CR
Anderson, MC
Yilmaz, MT
Mecikalski, J
Schultz, L
AF Anderson, W. B.
Zaitchik, B. F.
Hain, C. R.
Anderson, M. C.
Yilmaz, M. T.
Mecikalski, J.
Schultz, L.
TI Towards an integrated soil moisture drought monitor for East Africa
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID LAND-SURFACE MODEL; ERS SCATTEROMETER; NEAR-SURFACE; VEGETATION;
SATELLITE; WEATHER; TEMPERATURE; COLLOCATION; VALIDATION; SCALES
AB Drought in East Africa is a recurring phenomenon with significant humanitarian impacts. Given the steep climatic gradients, topographic contrasts, general data scarcity, and, in places, political instability that characterize the region, there is a need for spatially distributed, remotely derived monitoring systems to inform national and international drought response. At the same time, the very diversity and data scarcity that necessitate remote monitoring also make it difficult to evaluate the reliability of these systems. Here we apply a suite of remote monitoring techniques to characterize the temporal and spatial evolution of the 2010-2011 Horn of Africa drought. Diverse satellite observations allow for evaluation of meteorological, agricultural, and hydrological aspects of drought, each of which is of interest to different stakeholders. Focusing on soil moisture, we apply triple collocation analysis (TCA) to three independent methods for estimating soil moisture anomalies to characterize relative error between products and to provide a basis for objective data merging. The three soil moisture methods evaluated include microwave remote sensing using the Advanced Microwave Scanning Radiometer -Earth Observing System (AMSR-E) sensor, thermal remote sensing using the Atmosphere-Land Exchange Inverse (ALEXI) surface energy balance algorithm, and physically based land surface modeling using the Noah land surface model. It was found that the three soil moisture monitoring methods yield similar drought anomaly estimates in areas characterized by extremely low or by moderate vegetation cover, particularly during the below-average 2011 long rainy season. Systematic discrepancies were found, however, in regions of moderately low vegetation cover and high vegetation cover, especially during the failed 2010 short rains. The merged, TCA-weighted soil moisture composite product takes advantage of the relative strengths of each method, as judged by the consistency of anomaly estimates across independent methods. This approach holds potential as a remote soil moisturebased drought monitoring system that is robust across the diverse climatic and ecological zones of East Africa.
C1 [Anderson, W. B.] Johns Hopkins Univ, Dept Geog & Environm Engn, Baltimore, MD 21218 USA.
[Zaitchik, B. F.] Johns Hopkins Univ, Dept Earth & Planetary Sci, Baltimore, MD 21218 USA.
[Hain, C. R.] Univ Maryland, Earth Syst Sci Interdisciplinary Ctr, College Pk, MD 20742 USA.
[Anderson, M. C.; Yilmaz, M. T.] ARS, Hydrol & Remote Sensing Lab, USDA, Beltsville, MD USA.
[Mecikalski, J.; Schultz, L.] Univ Alabama, Natl Space Sci & Technol Ctr, Atmospher Sci Dept, Huntsville, AL 35805 USA.
RP Anderson, WB (reprint author), Johns Hopkins Univ, Dept Geog & Environm Engn, Baltimore, MD 21218 USA.
EM weston.b.anderson@gmail.com
RI Zaitchik, Benjamin/B-9461-2013; Hain, Christopher/G-3512-2012; Anderson,
Martha/C-1720-2015
OI Hain, Christopher/0000-0002-0093-6816; Anderson,
Martha/0000-0003-0748-5525
FU NASA Applied Sciences grant [NNX09AT61G]
FX This study was supported in part by NASA Applied Sciences grant
NNX09AT61G.
NR 56
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Z9 35
U1 7
U2 41
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 8
BP 2893
EP 2913
DI 10.5194/hess-16-2893-2012
PG 21
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 998ND
UT WOS:000308245800036
ER
PT J
AU Anderson, L
Chase, L
Kestenbaum, D
Mastrangelo, C
AF Anderson, Laura
Chase, Lisa
Kestenbaum, David
Mastrangelo, Cristina
TI Ecolabels for Passenger Transportation: Understanding Motorcoach Company
Receptiveness to a Pilot Green Certification Program
SO INTERNATIONAL JOURNAL OF SUSTAINABLE TRANSPORTATION
LA English
DT Article
DE environmental practices; green certification; motorcoach travel
ID ENVIRONMENTALLY RESPONSIBLE BEHAVIOR; DETERMINANTS; TOURISM
AB In 2009, an internet survey was administered to members of two motorcoach associations to examine sustainability in the passenger transportation sector in the context of environmental certification. Higher levels of company leader familiarity with green practices, more positive company leader attitudes towards these practices, and more green practices within a company were found among groups of company leaders who indicated a greater willingness to participate in a pilot certification program. Additionally, significant positive correlations were found between company leader familiarity with environmental practices, company leader attitudes towards environmental practices, and the number of environmental practices at companies.
C1 [Anderson, Laura] Univ Vermont, RSENR, Burlington, VT 05405 USA.
[Chase, Lisa] Univ Vermont, UVM Extens, Brattleboro, VT USA.
[Kestenbaum, David] Univ Vermont, UVM Extens, Colchester, VT USA.
[Mastrangelo, Cristina] US Forest Serv, Bend, OR USA.
RP Anderson, L (reprint author), Univ Vermont, RSENR, 81 Carrigan Dr, Burlington, VT 05405 USA.
EM landers2@uvm.edu
NR 29
TC 1
Z9 1
U1 2
U2 5
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1556-8318
J9 INT J SUSTAIN TRANSP
JI Int. J. Sustain. Transp.
PY 2012
VL 7
IS 2
BP 125
EP 142
DI 10.1080/15568318.2011.626889
PG 18
WC GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY; Environmental Studies;
Transportation
SC Science & Technology - Other Topics; Environmental Sciences & Ecology;
Transportation
GA 996XY
UT WOS:000308129300002
ER
PT J
AU Coates, BS
Alves, AP
Wang, HC
Walden, KKO
French, BW
Miller, NJ
Abel, CA
Robertson, HM
Sappington, TW
Siegfried, BD
AF Coates, Brad S.
Alves, Analiza P.
Wang, Haichuan
Walden, Kimberly K. O.
French, B. Wade
Miller, Nicholas J.
Abel, Craig A.
Robertson, Hugh M.
Sappington, Thomas W.
Siegfried, Blair D.
TI Distribution of Genes and Repetitive Elements in the Diabrotica
virgifera virgifera Genome Estimated Using BAC Sequencing
SO JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
LA English
DT Article
ID WESTERN CORN-ROOTWORM; MULTIPLE TRANSATLANTIC INTRODUCTIONS; ARTIFICIAL
CHROMOSOME LIBRARY; COLEOPTERA-CHRYSOMELIDAE; TRANSPOSABLE ELEMENTS;
TRIBOLIUM-CASTANEUM; LABORATORY COLONIES; WEB SERVER; SIZE; POPULATION
AB Feeding damage caused by the western corn rootworm, Diabrotica virgifera virgifera, is destructive to corn plants in North America and Europe where control remains challenging due to evolution of resistance to chemical and transgenic toxins. A BAC library, DvvBAC1, containing 109,486 clones with 104 +/- 34.5 kb inserts was created, which has an similar to 4.56X genome coverage based upon a 2.58 Gb (2.80 pg) flow cytometry-estimated haploid genome size. Paired end sequencing of 1037 BAC inserts produced 1.17 Mb of data (similar to 0.05% genome coverage) and indicated similar to 9.4 and 16.0% of reads encode, respectively, endogenous genes and transposable elements (TEs). Sequencing genes within BAC full inserts demonstrated that TE densities are high within intergenic and intron regions and contribute to the increased gene size. Comparison of homologous genome regions cloned within different BAC clones indicated that TE movement may cause haplotype variation within the inbred strain. The data presented here indicate that the D. virgifera virgifera genome is large in size and contains a high proportion of repetitive sequence. These BAC sequencing methods that are applicable for characterization of genomes prior to sequencing may likely be valuable resources for genome annotation as well as scaffolding.
C1 [Coates, Brad S.; Abel, Craig A.; Sappington, Thomas W.] USDA ARS, Corn Insects & Crop Genet Res Unit, Ames, IA 50011 USA.
[Coates, Brad S.; Sappington, Thomas W.] Iowa State Univ, Dept Entomol, Ames, IA 50011 USA.
[Alves, Analiza P.; Wang, Haichuan; Miller, Nicholas J.; Siegfried, Blair D.] Univ Nebraska, Dept Entomol, Lincoln, NE 68583 USA.
[Walden, Kimberly K. O.; Robertson, Hugh M.] Univ Illinois, Champaign Urbana, IL 61801 USA.
[French, B. Wade] USDA ARS, N Cent Agr Res Lab, Brookings, SD 57006 USA.
RP Coates, BS (reprint author), USDA ARS, Corn Insects & Crop Genet Res Unit, Ames, IA 50011 USA.
EM brad.coates@ars.usda.gov
RI Miller, Nicholas/I-4119-2012
OI Miller, Nicholas/0000-0001-9827-8286
FU Iowa Agriculture and Home Economics Experiment Station, Iowa State
University, Ames, IA [3543]
FX This research was a joint contribution from the USDA Agricultural
Research Service (CRIS Project 3625-22000-017-00D), Iowa Agriculture and
Home Economics Experiment Station, Iowa State University, Ames, IA
(Project 3543), the University of Nebraska, and the University of
Illinois at Champaign-Urbana. This paper reports the results of research
only. Mention of a proprietary product does not constitute an
endorsement or a recommendation by the parties herein for their use.
NR 60
TC 3
Z9 3
U1 0
U2 15
PU HINDAWI PUBLISHING CORPORATION
PI NEW YORK
PA 410 PARK AVENUE, 15TH FLOOR, #287 PMB, NEW YORK, NY 10022 USA
SN 1110-7243
J9 J BIOMED BIOTECHNOL
JI J. Biomed. Biotechnol.
PY 2012
AR 604076
DI 10.1155/2012/604076
PG 9
WC Biotechnology & Applied Microbiology; Medicine, Research & Experimental
SC Biotechnology & Applied Microbiology; Research & Experimental Medicine
GA 997UA
UT WOS:000308190800001
ER
PT J
AU Barron, ES
Emery, MR
AF Barron, Elizabeth S.
Emery, Marla R.
TI Implications of Variation in Social-Ecological Systems for the
Development of US Fungal Management Policy
SO SOCIETY & NATURAL RESOURCES
LA English
DT Article
DE fungi; nontimber forest products; participatory research; resource
management; wild edible mushrooms
ID PACIFIC-NORTHWEST; FORESTRY ORGANIZATIONS; ADAPTIVE MANAGEMENT; OREGON;
MUSHROOMS; KNOWLEDGE; SCALE
AB Public lands fungal management in the United States developed in direct response to commercial harvesting in the Pacific Northwest (PNW) in the 1980s. In the early 2000s, concerns over declining morel mushroom abundance in national parks in the greater Washington, DC, region (NCR) led to the creation of harvest limits and stimulated research on the social-ecological system of morels in that region. In this article we compare findings from research on morel harvesting conducted at two national parks in the NCR from 2004 to 2007, with fungal management from two federal units in the PNW. We find substantial differences in existing regulatory policies, historical and cultural harvesting practices, and taxonomic and ecological variation in Morchella, indicating the need for regionally specific management. To address these differences, we recommend a participatory approach incorporating the local social-ecological specificities of mushroom harvesting and ecology that are missed at coarser spatial and temporal scales.
C1 [Barron, Elizabeth S.] Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA 02138 USA.
[Emery, Marla R.] US Forest Serv, USDA, No Res Stn, Burlington, VT USA.
RP Barron, ES (reprint author), Harvard Univ, Dept Organism & Evolutionary Biol, 16 Divin Ave, Cambridge, MA 02138 USA.
EM ebarron@oeb.harvard.edu
NR 45
TC 1
Z9 1
U1 0
U2 14
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0894-1920
J9 SOC NATUR RESOUR
JI Soc. Nat. Resour.
PY 2012
VL 25
IS 10
BP 996
EP 1011
DI 10.1080/08941920.2011.650348
PG 16
WC Environmental Studies; Planning & Development; Sociology
SC Environmental Sciences & Ecology; Public Administration; Sociology
GA 996ZN
UT WOS:000308133600004
ER
PT J
AU Gao, F
De Colstoun, EB
Ma, RH
Weng, QH
Masek, JG
Chen, J
Pan, YZ
Song, CH
AF Gao, Feng
De Colstoun, Eric Brown
Ma, Ronghua
Weng, Qihao
Masek, Jeffrey G.
Chen, Jin
Pan, Yaozhong
Song, Conghe
TI Mapping impervious surface expansion using medium-resolution satellite
image time series: a case study in the Yangtze River Delta, China
SO INTERNATIONAL JOURNAL OF REMOTE SENSING
LA English
DT Article
ID SPECTRAL MIXTURE ANALYSIS; LAND-USE CHANGE; URBAN-GROWTH; CITY LIGHTS;
URBANIZATION; COVER; CLASSIFICATION; LANDSCAPE; CLIMATE; SCALE
AB Cities have been expanding rapidly worldwide, especially over the past few decades. Mapping the dynamic expansion of impervious surface in both space and time is essential for an improved understanding of the urbanization process, land-cover and land-use change, and their impacts on the environment. Landsat and other medium-resolution satellites provide the necessary spatial details and temporal frequency for mapping impervious surface expansion over the past four decades. Since the US Geological Survey opened the historical record of the Landsat image archive for free access in 2008, the decades-old bottleneck of data limitation has gone. Remote-sensing scientists are now rich with data, and the challenge is how to make best use of this precious resource. In this article, we develop an efficient algorithm to map the continuous expansion of impervious surface using a time series of four decades of medium-resolution satellite images. The algorithm is based on a supervised classification of the time-series image stack using a decision tree. Each imerpervious class represents urbanization starting in a different image. The algorithm also allows us to remove inconsistent training samples because impervious expansion is not reversible during the study period. The objective is to extract a time series of complete and consistent impervious surface maps from a corresponding times series of images collected from multiple sensors, and with a minimal amount of image preprocessing effort. The approach was tested in the lower Yangtze River Delta region, one of the fastest urban growth areas in China. Results from nearly four decades of medium-resolution satellite data from the Landsat Multispectral Scanner (MSS), Thematic Mapper (TM), Enhanced Thematic Mapper plus (ETM+) and China-Brazil Earth Resources Satellite (CBERS) show a consistent urbanization process that is consistent with economic development plans and policies. The time-series impervious spatial extent maps derived from this study agree well with an existing urban extent polygon data set that was previously developed independently. The overall mapping accuracy was estimated at about 92.5% with 3% commission error and 12% omission error for the impervious type from all images regardless of image quality and initial spatial resolution.
C1 [Song, Conghe] Univ N Carolina, Dept Geog, Chapel Hill, NC 27599 USA.
[Gao, Feng] ARS, Hydrol & Remote Sensing Lab, USDA, Beltsville, MD 20705 USA.
[De Colstoun, Eric Brown; Masek, Jeffrey G.] NASA, Goddard Space Flight Ctr, Biospher Sci Lab, Greenbelt, MD 20771 USA.
[Ma, Ronghua] Chinese Acad Sci, Nanjing Inst Geog & Limnol, Nanjing 210008, Peoples R China.
[Weng, Qihao] Indiana State Univ, Dept Earth & Environm Syst, Terre Haute, IN 47809 USA.
[Chen, Jin; Pan, Yaozhong] Beijing Normal Univ, State Key Lab Earth Surface Proc & Resource Ecol, Beijing 100875, Peoples R China.
RP Song, CH (reprint author), Univ N Carolina, Dept Geog, Chapel Hill, NC 27599 USA.
EM csong@email.unc.edu
RI Masek, Jeffrey/D-7673-2012; Song, Conghe/E-3087-2016
OI Song, Conghe/0000-0002-4099-4906
FU US Geological Survey (USGS) Landsat Science Team project; NASA Land
Cover and Land Use Change (LCLUC) project; Strategic Priority Research
Programme of the Chinese Academy of Sciences [XDA05050106]
FX This work was supported by the US Geological Survey (USGS) Landsat
Science Team project, the NASA Land Cover and Land Use Change (LCLUC)
project and the Strategic Priority Research Programme of the Chinese
Academy of Sciences, Climate Change: Carbon Budget and Relevant Issues,
Grant No. XDA05050106.
NR 38
TC 24
Z9 25
U1 5
U2 60
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0143-1161
J9 INT J REMOTE SENS
JI Int. J. Remote Sens.
PY 2012
VL 33
IS 24
BP 7609
EP 7628
DI 10.1080/01431161.2012.700424
PG 20
WC Remote Sensing; Imaging Science & Photographic Technology
SC Remote Sensing; Imaging Science & Photographic Technology
GA 979RE
UT WOS:000306836700001
ER
PT J
AU Erwin, TL
White, WH
AF Erwin, Terry L.
White, William H.
TI The Nearctic-Caribbean species Leptotrachelus dorsalis (Fabricius,
1801): Larval descriptions with a diagnosis of immature Ctenodactylini
and natural history notes on the genus and tribe (Coleoptera, Carabidae)
SO ZOOKEYS
LA English
DT Article
DE Sugarcane Savior Beetle; Louisiana; commensalism; Sugarcane; Saccharum
officinarum L.; Sugarcane Borer; Diatraea saccharalis (Fabricius)
AB Adults and larvae of Leptotrachelus dorsalis (Fabricius), the Sugarcane Savior Beetle, live in association with grasses, the larvae in the appressed leaf axils. Both adult and larval L. dorsalis eat larvae of the Sugarcane Borer, Diatraea saccharalis (Fabricius), and perhaps other insects living in the confines of the leaf sheaths of that and other grass-like species. The geographic range of L. dorsalis extends from Kansas in the west to the Atlantic seaboard, north as far as Ontario, Canada and south to Cuba; it is an eastern species of North America and the Caribbean. Larval character attributes that are shared with a related ctenodactyline, Askalaphium depressum (Bates), provide a preliminary basis for characterization of the immatures of tribe Ctenodactylini.
C1 [Erwin, Terry L.] Smithsonian Inst, Natl Museum Nat Hist, Dept Entomol, Hyperdivers Grp, Washington, DC 20013 USA.
[White, William H.] ARS, USDA, Sugarcane Res Lab, Houma, LA 70360 USA.
RP Erwin, TL (reprint author), Smithsonian Inst, Natl Museum Nat Hist, Dept Entomol, Hyperdivers Grp, MRC-187,POB 37012, Washington, DC 20013 USA.
EM erwint@si.edu
FU American Sugar Cane League of the U.S.A., Inc.
FX We thank Randy Richard and Elta Duet of the USDA, ARS Sugarcane Research
Unit for valuable assistance in the field and laboratory. We also thank
Warren Steiner for specimen preparation and general collection
assistance, Young Sohn who provided the excellent larval illustrations,
Charyn Micheli for literature research and critical review of the
manuscript, as well as Karolyn Darrow for her assistance with rendering
and arranging the many illustration plates and photos; all four
individuals are part of the important technical staff of the Department
of Entomology, Smithsonian Institution. Lourdes Chamorro (USDA Staff in
NMNH) also provided a critical review of the manuscript. Funding for
this study was received from the American Sugar Cane League of the
U.S.A., Inc. and publication costs borne by the National Museum of
Natural History, Smithsonian Institution. We also thank two excellent
anonymous reviewers who contributed much to the final product, although
we are responsible for any errors that might still be maintained in the
final product.
NR 11
TC 1
Z9 2
U1 1
U2 2
PU PENSOFT PUBLISHERS
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1313-2989
J9 ZOOKEYS
JI ZooKeys
PY 2012
IS 194
BP 17
EP 32
DI 10.3897/zookeys.194.3308
PG 16
WC Zoology
SC Zoology
GA 979YP
UT WOS:000306861100002
PM 22679382
ER
PT J
AU Samala, A
Srinivasan, R
Yadav, MP
Kim, TJ
Prewitt, L
AF Samala, Aditya
Srinivasan, Radhakrishnan
Yadav, Madhav P.
Kim, Tae-Jo
Prewitt, Lynn
TI XYLO-OLIGOSACCHARIDES PRODUCTION BY AUTOHYDROLYSIS OF CORN FIBER
SEPARATED FROM DDGS
SO BIORESOURCES
LA English
DT Article
DE DDGS; Oligosaccharides; Corn fiber; Feedstock; XOS
ID DISTILLERS DRIED GRAINS; WOOD; PRETREATMENT; INFECTION
AB Xylo-oligosaccharides (XOS) are reported to have beneficial health properties, and they are considered to be functional food ingredients. Corn fiber separated from distillers dried grains with solubles (DDGS) could be a valuable feedstock for XOS production. The objective of this study was to determine the efficacy for autohydrolysis to produce XOS using fiber separated from DDGS and to determine the optimum temperature for XOS production. Corn fiber was treated with deionized water in a Parr-reactor, at temperatures ranging from 140 to 220 degrees C to produce XOS. The maximum total yield of XOS in the solution was 18.6 wt% of the corn fiber at 180 degrees C.
C1 [Samala, Aditya; Srinivasan, Radhakrishnan] Mississippi State Univ, Dept Agr & Biol Engn, Mississippi State, MS 39762 USA.
[Yadav, Madhav P.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
[Kim, Tae-Jo] Mississippi State Univ, Dept Food Sci Nutr & Hlth Promot, Mississippi State, MS 39762 USA.
[Prewitt, Lynn] Mississippi State Univ, Dept Forest Prod, Mississippi State, MS 39762 USA.
RP Srinivasan, R (reprint author), Mississippi State Univ, Dept Agr & Biol Engn, Box 9632, Mississippi State, MS 39762 USA.
EM rs634@msstate.edu
FU Sustainable Energy Research Centre (SERC)
FX We thank Kaleb Smith, Bubba Trammell, and Ravi Challa for their
technical assistance and Sustainable Energy Research Centre (SERC) for
providing partial funding for this project. We thank Dr. Kevin Hicks,
Research Leader, Sustainable Biofuels and Co-Products, ERRC, ARS, USDA,
for critically reviewing the manuscript.
NR 21
TC 8
Z9 8
U1 0
U2 8
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 3
BP 3038
EP 3050
PG 13
WC Materials Science, Paper & Wood
SC Materials Science
GA 990OI
UT WOS:000307639900026
ER
PT J
AU Qing, Y
Sabo, R
Wu, YQ
Cai, ZY
AF Qing, Yan
Sabo, Ronald
Wu, Yiqiang
Cai, Zhiyong
TI HIGH-PERFORMANCE CELLULOSE NANOFIBRIL COMPOSITE FILMS
SO BIORESOURCES
LA English
DT Article
DE Cellulose nanofibril; Phenol formaldehyde; Mechanical properties;
Electron microscopy; Thermal degradation; Hygroscopic capacity
ID MICROFIBRILLATED CELLULOSE; POLYVINYL-ALCOHOL; NANOCOMPOSITES
AB Cellulose nanofibril/phenol formaldehyde (CNF/PF) composite films with high work of fracture were prepared by filtering a mixture of 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO) oxidized wood nanofibers and water-soluble phenol formaldehyde with resin contents ranging from 5 to 20 wt%, followed by hot pressing. The composites were characterized by tensile testing, dynamic mechanical analysis, scanning electron microscopy, atomic force microscopy, thermo-gravimetric analysis, and moisture/water absorption. Neat CNF films had tensile stress and Young's modulus of 232 MPa and 4.79 GPa, respectively. PF resin was found to be well dispersed in the composites, although the resin increased the roughness of the film surfaces. Hygroscopic capacities of the composites were dramatically reduced, as compared to neat films, in both high humidity environments and when soaked in water. The composites exhibited slightly reduced tensile strength with modestly increased storage modulus compared to neat CNF films. Remarkably, the work of fracture ranged from 20 to 27 MJ/m(3), making these films among the toughest reported for cellulose nanocomposites.
C1 [Qing, Yan; Sabo, Ronald; Cai, Zhiyong] USDA, Forest Prod Lab, Madison, WI 53726 USA.
[Qing, Yan; Wu, Yiqiang] Cent S Univ Forestry & Technol, Sch Mat Sci & Engn, Changsha 410004, Hunan, Peoples R China.
RP Sabo, R (reprint author), USDA, Forest Prod Lab, 1 Gifford Pinchot Dr, Madison, WI 53726 USA.
EM rsabo@fs.fed.us; zcai@fs.fed.us
FU national "948" project of China [2009-4-51]
FX Enormous gratitude is offered to Rick Reiner for preparing and supplying
cellulose nanofibers. The authors would also like to acknowledge
Benjamin Treml for help with tensile testing. Tom Kuster and Jane O'Dell
are kindly acknowledged for SEM and DMTA tests, respectively. The
authors would also like to thank Joseph Jakes and Jane O'Dell for
performing AFM scans. This work was partly supported by the national
"948" project of China (2009-4-51).
NR 29
TC 15
Z9 18
U1 3
U2 22
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 3
BP 3064
EP 3075
PG 12
WC Materials Science, Paper & Wood
SC Materials Science
GA 990OI
UT WOS:000307639900028
ER
PT J
AU Li, ZQ
Jiang, ZH
Fei, BH
Pan, XJ
Cai, ZY
Liu, XE
Yu, Y
AF Li, Zhiqiang
Jiang, Zehui
Fei, Benhua
Pan, Xunjun
Cai, Zhiyong
Liu, Xing'e
Yu, Yan
TI ETHANOL ORGANOSOLV PRETREATMENT OF BAMBOO FOR EFFICIENT ENZYMATIC
SACCHARIFICATION
SO BIORESOURCES
LA English
DT Article
DE Bamboo; Bioethanol; Ethanol organosolv pretreatment; Dilute acid
ID BIOETHANOL PRODUCTION; HYDROLYSIS; BIOCONVERSION; POPLAR
AB Bamboo is a potential lignocellulosic biomass for the production of bioethanol because of its high cellulose and hemicelluloses content. In this research, ethanol organosolv pretreatment with dilute sulfuric acid as the catalyst was studied in order to enhance enzymatic saccharification of moso bamboo. The addition of 2% (w/w bamboo) dilute sulfuric acid in 75% ethanol had a particularly strong effect on fractionation of bamboo. It yielded a solids fraction containing 83.4% cellulose in the treated substrate. The cellulose conversion to glucose yield reached 77.1 to 83.4% after enzymatic hydrolysis of the solids fraction for 48 h at an enzyme loading of 15 FPU cellulase/g cellulose and 30 IU beta-glucosidase/g cellulose. The enzymatic hydrolysis rate was significantly accelerated as the ethanol organosolv pretreatment time increased, reaching the highest enzymatic glucose yield of 83.4% after 48 h at 50 degrees C. The concentrations of fermentation inhibitors such as HMF (5-hydroxy-2-methyl furfural) and furfural were 0.96 g/L and 4.38 g/L in the spent liquor after the ethanol organosolv pretreatment, which were slightly lower than the concentrations quantified during H2SO4-water treatment. Spent liquor was diluted with water, and more than 87.2% of lignin in raw bamboo was recovered as ethanol organosolv lignin through the filtration process.
C1 [Li, Zhiqiang; Jiang, Zehui; Fei, Benhua; Liu, Xing'e; Yu, Yan] Int Ctr Bamboo & Rattan, Beijing 100102, Peoples R China.
[Pan, Xunjun] Univ Wisconsin, Madison, WI 53706 USA.
[Cai, Zhiyong] US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
RP Jiang, ZH (reprint author), Int Ctr Bamboo & Rattan, Beijing 100102, Peoples R China.
EM jiangzehui@icbr.ac.cn; xpan@wisc.edu
FU Fundamental Research Funds for the International Centre for Bamboo and
Rattan [1632012001]
FX The authors are grateful for the support of 'the Fundamental Research
Funds for the International Centre for Bamboo and Rattan', Grant. No.
1632012001.
NR 25
TC 13
Z9 14
U1 2
U2 11
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 3
BP 3452
EP 3462
PG 11
WC Materials Science, Paper & Wood
SC Materials Science
GA 990OI
UT WOS:000307639900059
ER
PT J
AU Jiang, JL
Lu, JX
Cai, ZY
AF Jiang, Jiali
Lu, Jianxiong
Cai, Zhiyong
TI THE VIBRATIONAL PROPERTIES OF CHINESE FIR WOOD DURING MOISTURE SORPTION
PROCESS
SO BIORESOURCES
LA English
DT Article
DE Changing process of moisture; Dynamic modulus of elasticity; Logarithmic
decrement; Anisotropic characteristics
ID SUGAR MAPLE WOOD; MECHANICAL-PROPERTIES; CREEP BEHAVIORS; HARDWOODS
AB The vibrational properties of Chinese fir (Cunninghamia lanceolata) wood were investigated in this study as a function of changes in moisture content (MC) and grain direction. The dynamic modulus of elasticity (DMOE) and logarithmic decrement (delta) were examined using a cantilever beam vibration testing apparatus. It was observed that DMOE and d of wood varied widely during moisture adsorption and desorption. The DMOE of wood conditioned by the adsorption process showed significant increases during the later stages of conditioning when the MC scarcely changed. However, with the desorption process, the DMOE did not increase as much during the later stages of conditioning, though they increased during the early stages of conditioning when the MC greatly decreased. These results suggest that wood in an unstable state, caused via the existing state of moisture, shows different vibrational behaviors. Furthermore, the parallel to grain direction showed much higher DMOE and lower d when compared to the perpendicular to grain direction. The variation of vibrational properties between parallel and perpendicular to grain direction under constant MC and during moisture adsorption process could be attributed due to the microscopic, macroscopic molecular, as well as chemical constituents of wood.
C1 [Jiang, Jiali; Lu, Jianxiong] Chinese Acad Forestry, Res Inst Wood Ind, State Forestry Adm, Key Lab Wood Sci & Technol, Beijing 100091, Peoples R China.
[Jiang, Jiali; Lu, Jianxiong] Chinese Acad Forestry, Res Inst New Technol, Beijing 100091, Peoples R China.
[Cai, Zhiyong] USDA Forest Serv, Forest Prod Lab, Madison, WI 53705 USA.
RP Lu, JX (reprint author), Chinese Acad Forestry, Res Inst Wood Ind, State Forestry Adm, Key Lab Wood Sci & Technol, Beijing 100091, Peoples R China.
EM jianxiong@caf.ac.cn
FU National Natural Science Foundation of China [31000266]; Research
Institute of New technology, Special Fund for Fundamental Research
[CAFINT2010C01]
FX This work was funded by the National Natural Science Foundation of China
(No.31000266) and Research Institute of New technology, Special Fund for
Fundamental Research (No. CAFINT2010C01).
NR 22
TC 2
Z9 3
U1 2
U2 9
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 3
BP 3585
EP 3596
PG 12
WC Materials Science, Paper & Wood
SC Materials Science
GA 990OI
UT WOS:000307639900069
ER
PT J
AU Ianchovichina, EI
Darwin, R
Shoemaker, R
AF Ianchovichina, Elena I.
Darwin, Roy
Shoemaker, Robin
BE Ianchovichina, EI
Walmsley, TL
TI Resource Use and Technological Progress in Agriculture
SO DYNAMIC MODELING AND APPLICATIONS FOR GLOBAL ECONOMIC ANALYSIS
LA English
DT Article; Book Chapter
C1 [Ianchovichina, Elena I.] World Bank, Washington, DC 20433 USA.
[Darwin, Roy; Shoemaker, Robin] USDA, Washington, DC USA.
RP Ianchovichina, EI (reprint author), World Bank, Washington, DC 20433 USA.
NR 19
TC 0
Z9 0
U1 0
U2 0
PU CAMBRIDGE UNIV PRESS
PI CAMBRIDGE
PA THE PITT BUILDING, TRUMPINGTON ST, CAMBRIDGE CB2 1RP, CAMBS, ENGLAND
BN 978-1-10701-169-4
PY 2012
BP 269
EP 289
D2 10.1017/CBO9781139059923
PG 21
WC Economics
SC Business & Economics
GA BBB33
UT WOS:000306338600010
ER
PT J
AU Nelson, LA
Scheffer, SJ
Yeates, DK
AF Nelson, Leigh A.
Scheffer, Sonja J.
Yeates, David K.
TI Species diversity of Fergusonina Malloch gall flies (Diptera:
Fergusoninidae) forming leaf bud galls on snow gum (Eucalyptus
pauciflora Sieb. ex Spreng. complex), with a description of a new
species from Tasmania
SO INSECT SYSTEMATICS & EVOLUTION
LA English
DT Article
DE Myrtaceae; morphology; mutualism; nematode
ID PHYLOGENETIC-RELATIONSHIPS; TYLENCHIDA NEOTYLENCHIDAE;
MELALEUCA-QUINQUENERVIA; EASTERN AUSTRALIA; 1ST RECORD; MYRTACEAE;
NEMATODE; FLY; ASSOCIATIONS; CHLOROPLAST
AB A new species of Fergusonina (Diptera: Fergusoninidae) fly is described from terminal leaf bud galls (TLBGs) from the Eucalyptus pauciflora Sieb. ex Spreng. (snow gum) species complex from Australia. Fergusonina tasmaniensis Nelson sp.n. is the first species from the genus Fergusonina to be described from Tasmania and the fourth from this host complex. Fergusonina tasmaniensis sp.n. can be distinguished from the other snow gum Fergusonina species by differences in adult size, markings on the mesonotum and the male genitalia, and from all other described Fergusonina by host specificity and differences in adult colouration, setation, genitalia and the morphology of the larval dorsal shield. In a molecular phylogeny of the snow gum-inhabiting Fergusonina species, E tasmaniensis sp.n. was resolved as monophyletic, and sister (mean distance = 3.82%) to a clade comprising F. daviesae Nelson and Yeates and F. omlandi Nelson and Yeates (mean interspecific distance = 2.48%).
C1 [Nelson, Leigh A.; Yeates, David K.] CSIRO Ecosyst Sci, Acton, ACT 2601, Australia.
[Scheffer, Sonja J.] ARS, Systemat Entomol Lab, USDA, Beltsville, MD 20705 USA.
RP Nelson, LA (reprint author), CSIRO Ecosyst Sci, Clunies Ross St, Acton, ACT 2601, Australia.
EM nelson.leigh@gmail.com
RI Yeates, David/A-9917-2008
OI Yeates, David/0000-0001-7729-6143
FU Schlinger Foundation; CSIRO
FX This research was facilitated by funding from the Schlinger Foundation
endowed to CSIRO. We thank Matt Lewis for collecting the molecular data.
A CSIRO McMaster Fellowship funded S.J.S. while in Australia.
NR 33
TC 3
Z9 3
U1 0
U2 9
PU BRILL ACADEMIC PUBLISHERS
PI LEIDEN
PA PLANTIJNSTRAAT 2, P O BOX 9000, 2300 PA LEIDEN, NETHERLANDS
SN 1399-560X
EI 1876-312X
J9 INSECT SYST EVOL
JI Insect Syst. Evol.
PY 2012
VL 43
IS 2
BP 147
EP 160
DI 10.1163/1876312X04302001
PG 14
WC Evolutionary Biology; Entomology
SC Evolutionary Biology; Entomology
GA 986DJ
UT WOS:000307320800003
ER
PT J
AU Amin, E
Radwan, MM
El-Hawary, SS
Fathy, MM
Mohammed, R
Becnel, JJ
Khan, I
AF Amin, Elham
Radwan, Mohamed M.
El-Hawary, Seham S.
Fathy, Magda M.
Mohammed, Rabab
Becnel, James J.
Khan, Ikhlas
TI Potent Insecticidal Secondary Metabolites from the Medicinal Plant
Acanthus montanus
SO RECORDS OF NATURAL PRODUCTS
LA English
DT Article
DE Acanthaceae; Acanthus montanus; adult Aedes aegypti; beta-sitosterol
glucoside; palmitic acid; protochatecuic acid; shikimic acid
ID ALIPHATIC ALCOHOL; CHEMICAL-CONSTITUENTS; METHANOLIC EXTRACT;
GLYCOSIDES; ILICIFOLIUS; ACANTHACEAE; ACID; BENZOXAZOLINONE;
MEGASTIGMANE; GLUCOSIDES
AB Acanthus montanus (Nees) T. Anders. (Family: Acanthaceae) is a small shrub with sparse branches and soft stems, widespread in Africa, the Balkans, Romania, Greece and Eastern Mediterranean. Documented evidence showed that the leaves of the plant possess spasmolytic, analgesic, anti-inflammatory and antipyretic activities. In our ongoing research project; aimed at identifying new natural compounds with insecticidal activity, the alcohol extract of the aerial parts of A. montanus exhibited a significant activity against adult Aedes aegypti. Phytochemical study of the plant has resulted in isolation of nine compounds, eight of which exhibit variable degrees of insecticidal activity. beta-sitosterol-3-O- beta -D-glucoside (1) exhibited potent mosquitocidal activity (100% mortality) against adult Aedes aegypti at 1.25 mu g/mg concentration, followed by palmitic acid (2) (90%), linaroside (3) (80%), and acetoside (9) (70%) respectively. It is noteworthy that this is the first report of insecticidal activity of beta-sitosterol-3-O- beta -D-glucoside, linaroside and acetoside.
C1 [Amin, Elham; Radwan, Mohamed M.; Khan, Ikhlas] Univ Mississippi, Natl Ctr Nat Prod Res, University, MS 38677 USA.
[El-Hawary, Seham S.; Fathy, Magda M.] Cairo Univ, Fac Pharm, Cairo, Egypt.
[Radwan, Mohamed M.] Univ Alexandria, Fac Pharm, Alexxandria, Egypt.
[Becnel, James J.] ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
[Amin, Elham; Mohammed, Rabab] Beni Suef Univ, Fac Pharm, Bani Suwayf, Egypt.
RP Khan, I (reprint author), Univ Mississippi, Natl Ctr Nat Prod Res, University, MS 38677 USA.
OI Radwan, Mohamed/0000-0002-7393-8601
FU Egyptian Government through The Ministry of Higher Education and
Scientific Research; Deployed War-Fighter Protection Research Program
(DWFP); U.S. Department of Defense through the Armed Forces Pest
Management Board (AFPMB); USDA ARS NPURU
FX Elham Amin thanks the Egyptian Government for the fellowship through The
Ministry of Higher Education and Scientific Research. This study was
also supported by a grant from Deployed War-Fighter Protection Research
Program (DWFP), the U.S. Department of Defense through the Armed Forces
Pest Management Board (AFPMB) and the USDA ARS NPURU.
NR 35
TC 2
Z9 2
U1 1
U2 4
PU ACG PUBLICATIONS
PI GEBZE-KOCAELI
PA EMLAK BANKASI MUTLUKENT KONUTLARI, OKYANUS 3 D-4, GEBZE-KOCAELI, 00000,
TURKEY
SN 1307-6167
J9 REC NAT PROD
JI Rec. Nat. Prod.
PY 2012
VL 6
IS 3
BP 301
EP 305
PG 5
WC Plant Sciences; Chemistry, Applied; Chemistry, Medicinal
SC Plant Sciences; Chemistry; Pharmacology & Pharmacy
GA 980WR
UT WOS:000306925400013
ER
PT J
AU Rand, TA
Waters, DK
Shanower, TG
Berzonsky, WA
AF Rand, Tatyana A.
Waters, Debra K.
Shanower, Thomas G.
Berzonsky, William A.
TI Effects of genotypic variation in stem solidity on parasitism of a
grass-mining insect
SO BASIC AND APPLIED ECOLOGY
LA English
DT Article
DE Plant resistance; Indirect effects; Stem morphology; Stem toughness;
Plant-herbivore interactions; Host-parasitoid dynamics; Trophic
interactions; Cephus cinctus; Bracon cephi; Bracon lissogaster
ID SAWFLY HYMENOPTERA; NATURAL ENEMIES; PLANT GENOTYPE; SPRING WHEAT;
COMMUNITY STRUCTURE; BIOLOGICAL-CONTROL; CEPHUS-CINCTUS; CEPHIDAE;
REGISTRATION; HERBIVORES
AB Host plant traits can play a significant role in influencing the importance, direction and intensity of tri-trophic interactions by both direct and indirect pathways. A major goal in applied tri-trophic research has been to determine whether breeding for host plant resistance traits can be combined with biological control to develop a more comprehensive control strategy. An important component of developing such a strategy is understanding how host resistance traits affect natural enemy prey interactions for important pest insects. Here we examine the influence of genotypic variation in stem solidity, the primary trait conferring resistance against the wheat stem sawfly, Cephus cinctus, on parasitism of this major pest of wheat by its native braconid parasitoids. To do so, we conducted a field experiment in which we established replicate plots of 23 wheat genotypes that varied in levels of stem solidity, and quantified herbivore abundance and levels of parasitism across three sites in two years. Increasing stem solidity was associated with an approximately four-fold reduction in average parasitism rates, both across experimental plots and across wheat genotypes. Our analyses suggest that these effects were primarily direct, rather than indirectly mediated via effects of stem solidity on herbivore infestation levels or density. Interestingly, wheat genotype also had a significant influence on levels of parasitism, independent of its effects on stem solidity. Overall, our results suggest that although increasing stem solidity generally reduces parasitism, significant genotypic variability in average parasitism levels exist within solidity categories. Thus it may be possible to select resistant solid stemmed genotypes that also maintain relatively high parasitism levels. To our knowledge, our study is among the first to demonstrate a strong direct effect of genotypic variation in stem solidity on parasitism of grass mining insects, with important applied implications.
C1 [Rand, Tatyana A.; Waters, Debra K.] ARS, USDA, No Plains Agr Res Lab, Sidney, MT 59270 USA.
[Shanower, Thomas G.] ARS, USDA, Ctr Grain & Anim Hlth Res, Manhattan, KS 66502 USA.
[Berzonsky, William A.] S Dakota State Univ, Dept Plant Sci, Brookings, SD 57007 USA.
RP Rand, TA (reprint author), ARS, USDA, No Plains Agr Res Lab, Sidney, MT 59270 USA.
EM Tatyana.Rand@ars.usda.gov
NR 44
TC 3
Z9 3
U1 0
U2 10
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1439-1791
J9 BASIC APPL ECOL
JI Basic Appl. Ecol.
PY 2012
VL 13
IS 3
BP 250
EP 259
DI 10.1016/j.baae.2012.03.005
PG 10
WC Ecology
SC Environmental Sciences & Ecology
GA 981QD
UT WOS:000306983500005
ER
PT J
AU Luppold, WG
Alderman, D
Schnabel, D
AF Luppold, William G.
Alderman, Delton
Schnabel, Doug
TI Changes in Tennessee's Secondary Hardwood Processing and Sawmill
Industries from 2005 to 2009
SO FOREST PRODUCTS JOURNAL
LA English
DT Article
AB Tennessee is in the center of the Eastern hardwood region and has experienced large declines in employment by primary and secondary hardwood processors since 2005 in a pattern similar to the one these processors have experienced nationally. The objective of this article is to examine changes in national hardwood processing industries between 2005 and 2009 and compare these changes with changes in secondary manufacturing employment and hardwood lumber production in Tennessee. The decline in employment in Tennessee's furniture industry was caused by increased imports of wooden furniture from Asia and reduced domestic furniture demand as the result of the 2009 recession. Reduced employment in Tennessee's flooring and kitchen cabinet industry was a function of the decline in home construction, large firms shifting production to other states, and the 2009 recession. Employment in the millwork industry was less affected perhaps because of shifts in production by larger firms from northern and western states to Tennessee. Declines in hardwood lumber consumption caused most large and very large sawmills in Tennessee to downsize and several medium and small mills to go out of business. The short-term outlook for Tennessee's secondary and primary hardwood manufacturers continues to be bleak except for pallets, crossties, and exports.
C1 [Luppold, William G.; Alderman, Delton] US Forest Serv, USDA, No Res Sta, Princeton, WV USA.
[Schnabel, Doug] Tennessee Div Forestry, Nashville, TN USA.
RP Luppold, WG (reprint author), US Forest Serv, USDA, No Res Sta, Princeton, WV USA.
EM wluppold@fs.fed.us; dalderman@fs.fed.us
NR 12
TC 0
Z9 0
U1 1
U2 3
PU FOREST PRODUCTS SOC
PI MADISON
PA 2801 MARSHALL COURT, MADISON, WI 53705-2295 USA
SN 0015-7473
J9 FOREST PROD J
JI For. Prod. J.
PY 2012
VL 62
IS 1
BP 4
EP 9
PG 6
WC Forestry; Materials Science, Paper & Wood
SC Forestry; Materials Science
GA 987LI
UT WOS:000307418100001
ER
PT J
AU Lohmeyer, KH
Pound, JM
Miller, JA
Klavons, JA
Davey, RB
AF Lohmeyer, Kimberly H.
Pound, J. Mathews
Miller, J. Allen
Klavons, Jerome A.
Davey, Ronald B.
TI Use of a Molasses-based Liquid Feed Supplement to Deliver Ivermectin to
Cattle to Control Ectoparasites
SO INTERNATIONAL JOURNAL OF APPLIED RESEARCH IN VETERINARY MEDICINE
LA English
DT Article
DE Feed supplement; free-choice molasses; Rhipicephalus (Boophilus)
microplus; Rhipicephalus (Boophilus) annulatus; tick control
ID WHITE-TAILED DEER; BOOPHILUS-ANNULATUS ACARI; IVOMEC SR BOLUS; LONE STAR
TICKS; SOUTH TEXAS; INJECTABLE MICROSPHERES; IXODIDAE; ARTIODACTYLA;
CERVIDAE; SERUM
AB Two different dosages of ivermectin (25 ppm and 100ppm) were used to medicate a liquid molasses feed supplement for free-choice consumption by cattle. Calves that fed on supplement medicated at 25 ppm with ivermectin had a 14 day mean consumption of 0.62 +/- 0.07 kg supplement/animal/day producing an average close of 15.5 mg of ivermectin per calf. The mean ivermectin level in serum for the 25 ppm rate was 15.7 +/- 2.6 ppb for days 8 - 14 of the study, and the peak average ivermectin blood serum level was 20 +/- 8.8 ppb on the fifteenth day, one day after the last day of treatment.
Calves that fed on supplement medicated at 100 ppm ivermectin had a 14 day mean consumption of 0.63 +/- 0.14 kg supplement/animal/day, producing an average daily dose of 63 mg of ivermectin per calf. The peak average ivermectin blood serum level for the 100 ppm rate was 85.6 +/- 23.6 ppb on the tenth day of treatment; and for days 8 - 14 of the trial the mean ivermectin blood serum level was 76.7 +/- 6.2 ppb. Seven days after termination of the study, no ivermectin was detected in the serum of cattle treated at the 25 ppm rate, while cattle treated at the 100 ppm rate still had ivermectin detectable at similar to 14 ppb. Fourteen days after termination of treatment, no ivermectin was detected in the serum of cattle treated at the 100 ppm rate. An ivermectin blood serum level of >= 10 ppb is known to control biting flies and ticks on cattle, suggesting that use of a molasses-based liquid feed supplement as a delivery method for systemically active drugs could be beneficial to the USDA-APHIS-VS Cattle Fever Tick Eradication Program.
C1 [Lohmeyer, Kimberly H.; Pound, J. Mathews; Klavons, Jerome A.] ARS, USDA, Knipling Bushland US Livestock Insects Res Lab, Kerrville, TX 78028 USA.
[Davey, Ronald B.] ARS, USDA, Cattle Fever Tick Res Lab, Edinburg, TX 78541 USA.
RP Lohmeyer, KH (reprint author), ARS, USDA, Knipling Bushland US Livestock Insects Res Lab, 2700 Fredericksburg Rd, Kerrville, TX 78028 USA.
EM kim.lohmeyer@ars.usda.gov
NR 18
TC 0
Z9 0
U1 0
U2 0
PU VETERINARY SOLUTIONS LLC
PI APOPKA
PA PO BOX 2083, APOPKA, FL 32704-2083 USA
SN 1542-2666
J9 INT J APPL RES VET M
JI Int. J. Appl. Res. Vet. Med.
PY 2012
VL 10
IS 2
BP 137
EP 141
PG 5
WC Veterinary Sciences
SC Veterinary Sciences
GA 981PR
UT WOS:000306982200005
ER
PT J
AU Fan, ZY
Keum, YS
Li, QX
Shelver, WL
Guo, LH
AF Fan, Zi-Yan
Keum, Young Soo
Li, Qing-Xiao
Shelver, Weilin L.
Guo, Liang-Hong
TI Development of indirect competitive fluorescence immunoassay for 2,2
',4,4 '-tetrabromodiphenyl ether using DNA/dye conjugate as antibody
multiple labels
SO JOURNAL OF ENVIRONMENTAL SCIENCES
LA English
DT Article
DE polybrominated diphenyl ethers; fluorescence immunoassay; microplate;
multiple labeling
ID POLYBROMINATED DIPHENYL ETHERS; BROMINATED FLAME RETARDANTS; MAGNETIC
PARTICLE IMMUNOASSAY; ENVIRONMENT; PBDES
AB An indirect competitive fluorescence immunoassay using a DNA/dye conjugate as antibody multiple labels was developed on 96-well plates for the identification and quantification of 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) in aqueous samples. A hapten, 2,4,2'-tribromodiphenyl ether-4'-aldehyde, was synthesized, and was conjugated to bovine serum albumin to form a coating antigen. Specific recognition of the antigen by anti-PBDE antiserum was confirmed by a surface plasmon resonance measurement. In the immunoassay, the coating antigen was adsorbed on a 96-well plate first, and a sample, antiserum and biotinylated goat anti-rabbit secondary antibody were then added and reacted sequentially. A biotinylatecl, double-stranded DNA with 219 base pairs was attached to the secondary antibody by using streptavidin as a molecular bridge. In situ multiple labeling of the antibody was accomplished after addition of a DNA-binding fluorescent dye, SYBR Green I. The working range of the immunoassay for the BDE-47 standard was 3.1-390 mu g/L, with an IC50 value of 15.6 mu g/L. The calculated LOD of the immunoassay is 0.73 mu g/L. The immunoassay demonstrated relatively high selectivity for BDE-47, showing very low cross-reactivity (< 3%) with BDE-15, BDE-153 and BDE-209. With a spiked river water sample containing 50 mu g/L BDE-47, quantification by the immunoassay was 41.9 mu g/L, which compared well with the standard GC-ECD method (45.7 mu g/L). The developed immunoassay provides a rapid screening tool for polybrominated diphenyl ethers in environmental samples.
C1 [Fan, Zi-Yan; Guo, Liang-Hong] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Environm Chem & Ecotoxicol, Beijing 100085, Peoples R China.
[Keum, Young Soo] Konkuk Univ Korea, Coll Life & Environm Sci, Seoul 143701, South Korea.
[Li, Qing-Xiao] Univ Hawaii Manoa, Dept Mol Biosci & Bioengn, Honolulu, HI 96822 USA.
[Shelver, Weilin L.] USDA ARS, Biosci Res Lab, Fargo, ND 58105 USA.
RP Guo, LH (reprint author), Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Environm Chem & Ecotoxicol, Beijing 100085, Peoples R China.
EM sumioo.van@gmail.com; LHGuo@rcees.ac.cn
RI Guo, Liang-Hong/A-2909-2012
FU Chinese Academy of Science [KSSCX-YW-G-059]; National Hi-Tech Research
and Development Program of China [2007AA06A407]; National Natural
Science Foundation of China [20825519, 20890112, 20921063]
FX This work was supported by the Chinese Academy of Science (No. KSSCX
-YW-G-059), the National Hi-Tech Research and Development Program of
China (No. 2007AA06A407) and the National Natural Science Foundation of
China (No. 20825519, 20890112, 20921063). We thank Yaxian Zhao for
skillful technical support and Zongyan Cui for GC-ECD operation.
NR 20
TC 1
Z9 1
U1 2
U2 29
PU SCIENCE PRESS
PI BEIJING
PA 16 DONGHUANGCHENGGEN NORTH ST, BEIJING 100717, PEOPLES R CHINA
SN 1001-0742
EI 1878-7320
J9 J ENVIRON SCI-CHINA
JI J. Environ. Sci.
PY 2012
VL 24
IS 7
BP 1334
EP 1340
DI 10.1016/S1001-0742(11)60929-7
PG 7
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA 976JQ
UT WOS:000306581100022
PM 23513455
ER
PT J
AU Hopper, KR
Woolley, JB
Hoelmer, K
Wu, KM
Qiao, GX
Lee, SW
AF Hopper, Keith R.
Woolley, James B.
Hoelmer, Kim
Wu, Kongming
Qiao, Ge-Xia
Lee, Seunghwan
TI An identification key to species in the mali complex of Aphelinus
(Hymenoptera, Chalcidoidea) with descriptions of three new species
SO JOURNAL OF HYMENOPTERA RESEARCH
LA English
DT Article
DE cryptic species; taxonomy; biological control
ID AMPLIFIED POLYMORPHIC DNA; BIOLOGICAL-CONTROL; WASPS HYMENOPTERA;
BRACONIDAE; SEQUENCES; APHID; PTEROMALIDAE; TRICHOGRAMMA; LEPIDOPTERA;
PARASITOIDS
AB The Aphelinus mali complex consists of eleven described species. Monophyly of this complex is well supported by a combination of traits: (1) a single complete row of setae proximal to the linea calva of the fore wing, with a few additional setae in the angle between this row and the marginal vein; (2) linea calva open (no setae at its posterior edge); (3) head and body dark except for parts of the metasoma; (4) meso- and metacoxae dark; (5) metafemur pale, (6) metatibia dark. Species within the complex have been distinguished by color and shape of antennal segments (particularly the third funicular segment), color of legs and metasoma, and relative length of ovipositor versus mesotibia. We provide a key for identifying species in the mali complex, and describe three new species, Aphelinus glycinis sp. n., Aphelinus rhamni sp. n., and Aphelinus coreae sp. n. from material in laboratory cultures originally reared from soybean aphid in China and Korea as candidates for biological control of soybean aphid, Aphis glycines.
C1 [Woolley, James B.] Texas A&M Univ, Dept Entomol, College Stn, TX 77843 USA.
[Hopper, Keith R.; Hoelmer, Kim] USDA ARS BIIR, Newark, DE 19713 USA.
[Wu, Kongming] Chinese Acad Agr Sci, Inst Plant Protect, State Key Lab Biol Plant Dis & Insect Pests, Beijing 100193, Peoples R China.
[Qiao, Ge-Xia] Chinese Acad Sci, Inst Zool, Beijing, Peoples R China.
[Lee, Seunghwan] Seoul Natl Univ, Coll Agr & Life Sci, Div Entomol, Seoul, South Korea.
RP Woolley, JB (reprint author), Texas A&M Univ, Dept Entomol, College Stn, TX 77843 USA.
EM jimwoolley@tamu.edu
FU North Central Soybean Research Program; NSF [DEB 0730616]
FX Alyssa Mann, undergraduate student at Texas A&M University, helped with
digital imaging and preparation of figures. Kathryn Lanier, USDA-ARS,
Newark, Delaware, reared the cultures of A. coreae, A. glycinis and A.
rhamni. We thank Istvan Miko for his generous help in reading the ms and
helping us to standardize our terminology according to the Hymenoptera
Anatomy Ontology project, and for providing the table of uri's for
anatomical terms used in the paper. We thank the editors and two
anonymous reviewers for their suggestions. This research was supported
in part by funding from the North Central Soybean Research Program (KRH)
and NSF award DEB 0730616 (JBW).
NR 33
TC 6
Z9 6
U1 1
U2 20
PU PENSOFT PUBL
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1070-9428
J9 J HYMENOPT RES
JI J. Hymenopt. Res.
PY 2012
VL 26
BP 73
EP 96
DI 10.3897/JHR.26.2584
PG 24
WC Entomology
SC Entomology
GA 979ZJ
UT WOS:000306863100004
ER
PT J
AU Rasmussen, C
Carrion, AL
Castro-Urgal, R
Chamorro, S
Gonzalez, VH
Griswold, TL
Herrera, HW
McMullen, CK
Olesen, JM
Traveset, A
AF Rasmussen, Claus
Carrion, Ana L.
Castro-Urgal, Rocio
Chamorro, Susana
Gonzalez, Victor H.
Griswold, Terry L.
Herrera, Henri W.
McMullen, Conley K.
Olesen, Jens M.
Traveset, Anna
TI Megachile timberlakei Cockerell (Hymenoptera: Megachilidae): Yet another
adventive bee species to the Galapagos Archipelago
SO PAN-PACIFIC ENTOMOLOGIST
LA English
DT Editorial Material
ID ISLANDS; INSECTS
C1 [Rasmussen, Claus; Olesen, Jens M.] Aarhus Univ, Dept Biosci, DK-8000 Aarhus C, Denmark.
[Carrion, Ana L.; Chamorro, Susana; Herrera, Henri W.] Charles Darwin Fdn, Galapagos, Quito, Ecuador.
[Castro-Urgal, Rocio; Chamorro, Susana; Traveset, Anna] Inst Mediterrani Estudis Avancats CSIC UIB, Terr Ecol Grp, Mallorca 07190, Illes Balears, Spain.
[Gonzalez, Victor H.] Univ Kansas, Nat Hist Museum, Div Entomol, Lawrence, KS 66045 USA.
[Griswold, Terry L.] Utah State Univ, USDA ARS Bee Biol & Systemat Lab, Logan, UT 84322 USA.
[McMullen, Conley K.] James Madison Univ, Dept Biol, Harrisonburg, VA 22807 USA.
RP Rasmussen, C (reprint author), Aarhus Univ, Dept Biosci, Ny Munkegade 114,Bldg 1540, DK-8000 Aarhus C, Denmark.
EM alrunen@yahoo.com; anilu_cb86@hotmail.com; rocio.castro@uib.es;
susana.chamorro@imedea.uib-csic.es; victorgonzab@gmail.com;
terry.griswold@ars.usda.gov; hherrera@fcdarwin.org.ec; mcmullck@jmu.edu;
jens.olesen@biology.au.dk; atraveset@imedea.uib-csic.es
RI Olesen, Jens/A-3011-2009; Rasmussen, Claus/J-6714-2012
OI Olesen, Jens/0000-0003-1998-1083; Rasmussen, Claus/0000-0003-1529-6548
NR 37
TC 3
Z9 4
U1 0
U2 7
PU PACIFIC COAST ENTOMOL SOC
PI SAN FRANCISCO
PA C/O CALIFORNIA ACADEMY SCIENCES, 875 HOWARD STREET, SAN FRANCISCO, CA
94103-3009 USA
SN 0031-0603
J9 PAN-PAC ENTOMOL
JI Pan-Pacific Entomol.
PD JAN
PY 2012
VL 88
IS 1
BP 98
EP 102
PG 5
WC Entomology
SC Entomology
GA 982GA
UT WOS:000307029800008
ER
PT J
AU Chow, V
Nong, G
St John, FJ
Rice, JD
Dickstein, E
Chertkov, O
Bruce, D
Detter, C
Brettin, T
Han, J
Woyke, T
Pitluck, S
Nolan, M
Pati, A
Martin, J
Copeland, A
Land, ML
Goodwin, L
Jones, JB
Ingram, LO
Shanmugam, KT
Preston, JF
AF Chow, Virginia
Nong, Guang
St John, Franz J.
Rice, John D.
Dickstein, Ellen
Chertkov, Olga
Bruce, David
Detter, Chris
Brettin, Thomas
Han, James
Woyke, Tanja
Pitluck, Sam
Nolan, Matt
Pati, Amrita
Martin, Joel
Copeland, Alex
Land, Miriam L.
Goodwin, Lynne
Jones, Jeffrey B.
Ingram, Lonnie O.
Shanmugam, Keelnathan T.
Preston, James F.
TI Complete genome sequence of Paenibacillus sp. strain JDR-2
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE aerobic; mesophile; Gram-positive; Paenibacillus; xylanolytic; xylan
ID GENUS PAENIBACILLUS; ALDOURONATE UTILIZATION; RNA GENES; POLYMYXA;
DEPOLYMERIZATION; RHIZOBACTERIUM; BACTERIA; PROPOSAL; OPINION; SYSTEM
AB Paenibacillus sp. strain JDR-2, an aggressively xylanolytic bacterium isolated from sweetgum (Liquidambar styraciflua) wood, is able to efficiently depolymerize, assimilate and metabolize 4-O-methylglucuronoxylan, the predominant structural component of hardwood hemicelluloses. A basis for this capability was first supported by the identification of genes and characterization of encoded enzymes and has been further defined by the sequencing and annotation of the complete genome, which we describe. In addition to genes implicated in the utilization of beta-1,4-xylan, genes have also been identified for the utilization of other hemicellulosic polysaccharides. The genome of Paenibacillus sp. JDR-2 contains 7,184,930 bp in a single replicon with 6,288 protein-coding and 122 RNA genes. Uniquely prominent are 874 genes encoding proteins involved in carbohydrate transport and metabolism. The prevalence and organization of these genes support a metabolic potential for bioprocessing of hemicellulose fractions derived from lignocellulosic resources.
C1 [Chow, Virginia; Nong, Guang; Rice, John D.; Ingram, Lonnie O.; Shanmugam, Keelnathan T.; Preston, James F.] Univ Florida, Dept Microbiol & Cell Sci, Gainesville, FL 32611 USA.
[St John, Franz J.] US Forest Serv, Forest Prod Lab, Madison, WI 53705 USA.
[Dickstein, Ellen; Jones, Jeffrey B.] Univ Florida, Dept Plant Pathol, Gainesville, FL 32611 USA.
[Chertkov, Olga; Bruce, David; Detter, Chris; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
[Brettin, Thomas; Land, Miriam L.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
[Han, James; Woyke, Tanja; Pitluck, Sam; Nolan, Matt; Pati, Amrita; Martin, Joel; Copeland, Alex] DOE Joint Genome Inst, Walnut Creek, CA USA.
RP Preston, JF (reprint author), Univ Florida, Dept Microbiol & Cell Sci, Gainesville, FL 32611 USA.
EM jpreston@ufl.edu
RI Land, Miriam/A-6200-2011; St John, Franz/J-8970-2016
OI Land, Miriam/0000-0001-7102-0031; St John, Franz/0000-0003-3458-5628
FU Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231];
Department of Energy via the Consortium for Plant Biotechnology
Research; Joint Genome Institute [4043135]
FX We thank the Electron Microscopy and Bio-Imaging laboratory,
Interdisciplinary Center for Biotechnology Research, University of
Florida for their assistance in preparing the scanning electron
micrographs of Strain Pjdr2. We also thank Len Pennacchio, Natalia
Ivanova, Roxanne Tapia and Shunsheng Han for their contributions in
genome sequencing and annotations of this organism. The work of genomic
sequencing was conducted by the U.S. Department of Energy Joint Genome
Institute and supported by the Office of Science of the U.S. Department
of Energy under Contract No. DE-AC02-05CH11231. This work was supported
by the funds from the Department of Energy via the Consortium for Plant
Biotechnology Research and the Joint Genome Institute (Project ID
4043135).
NR 38
TC 9
Z9 18
U1 4
U2 10
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2012
VL 6
IS 1
BP 1
EP 10
DI 10.4056/sigs.2374349
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 978PU
UT WOS:000306758100001
PM 22675593
ER
PT J
AU Vencill, WK
Nichols, RL
Webster, TM
Soteres, JK
Mallory-Smith, C
Burgos, NR
Johnson, WG
McClelland, MR
AF Vencill, William K.
Nichols, Robert L.
Webster, Theodore M.
Soteres, John K.
Mallory-Smith, Carol
Burgos, Nilda R.
Johnson, William G.
McClelland, Marilyn R.
TI Herbicide Resistance: Toward an Understanding of Resistance Development
and the Impact of Herbicide-Resistant Crops
SO WEED SCIENCE
LA English
DT Article
ID RICE ORYZA-SATIVA; INTEGRATED WEED MANAGEMENT; MEDIATED GENE FLOW;
GOATGRASS AEGILOPS-CYLINDRICA; TRANSGENIC OILSEED RAPE; WHEAT
TRITICUM-AESTIVUM; ACETYL-COA CARBOXYLASE; CANOLA BRASSICA-NAPUS;
SOYBEAN GLYCINE-MAX; BENTGRASS AGROSTIS-STOLONIFERA
C1 [Vencill, William K.] Univ Georgia, Dept Crop & Soil Sci, Athens, GA 30502 USA.
[Webster, Theodore M.] USDA ARS, Crop Protect & Management Res Unit, Tifton, GA 31794 USA.
[Nichols, Robert L.] Cotton Inc, Cary, NC 27513 USA.
[Soteres, John K.] Monsanto Co, Dept Sci Affairs, St Louis, MO 63167 USA.
[Mallory-Smith, Carol] Oregon State Univ, Dept Crop & Soil Sci, Corvallis, OR 97331 USA.
[Burgos, Nilda R.; McClelland, Marilyn R.] Univ Arkansas, Dept Crop Soil & Environm Sci, Fayetteville, AR 72704 USA.
[Johnson, William G.] Purdue Univ, Dept Bot & Plant Pathol, W Lafayette, IN 47907 USA.
RP Vencill, WK (reprint author), Univ Georgia, Dept Crop & Soil Sci, 3111 Miller Plant Sci Bldg,120 Carlton St, Athens, GA 30502 USA.
EM wvencill@uga.edu
RI Webster, Theodore/A-4468-2009; Vencill, William/K-7748-2015
OI Webster, Theodore/0000-0002-8259-2059; Vencill,
William/0000-0001-7233-4534
FU United States Department of Agriculture's (USDA) Animal and Plant Health
Inspection Service [08-2000-0050-CA]
FX This publication was supported in part by the United States Department
of Agriculture's (USDA) Animal and Plant Health Inspection Service
Agreement Number 08-2000-0050-CA.
NR 338
TC 51
Z9 56
U1 10
U2 87
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0043-1745
EI 1550-2759
J9 WEED SCI
JI Weed Sci.
PY 2012
VL 60
SI SI
BP 2
EP 30
DI 10.1614/WS-D-11-00206.1
PG 29
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA 988XA
UT WOS:000307523600002
ER
PT J
AU Norsworthy, JK
Ward, SM
Shaw, DR
Llewellyn, RS
Nichols, RL
Webster, TM
Bradley, KW
Frisvold, G
Powles, SB
Burgos, NR
Witt, WW
Barrett, M
AF Norsworthy, Jason K.
Ward, Sarah M.
Shaw, David R.
Llewellyn, Rick S.
Nichols, Robert L.
Webster, Theodore M.
Bradley, Kevin W.
Frisvold, George
Powles, Stephen B.
Burgos, Nilda R.
Witt, William W.
Barrett, Michael
TI Reducing the Risks of Herbicide Resistance: Best Management Practices
and Recommendations
SO WEED SCIENCE
LA English
DT Article
ID AMARANTH AMARANTHUS-PALMERI; INTEGRATED WEED MANAGEMENT; CORN ZEA-MAYS;
VELVETLEAF ABUTILON-THEOPHRASTI; SOYBEAN GLYCINE-MAX; MORNINGGLORY
IPOMOEA-LACUNOSA; ECHINOCHLOA-CRUS-GALLI; COCKLEBUR XANTHIUM-STRUMARIUM;
NUTSEDGE CYPERUS-ESCULENTUS; HORSEWEED CONYZA-CANADENSIS
C1 [Norsworthy, Jason K.; Ward, Sarah M.; Burgos, Nilda R.] Univ Arkansas, Dept Crop Soil & Environm Sci, Fayetteville, AR 72704 USA.
[Shaw, David R.] Mississippi State Univ, GeoResources Inst, Mississippi State, MS 39762 USA.
[Llewellyn, Rick S.] CSIRO Sustainable Ecosyst, Glen Osmond, SA 5064, Australia.
[Nichols, Robert L.] Cotton Inc, Cary, NC 27513 USA.
[Webster, Theodore M.] USDA ARS, Crop Protect & Management Res Unit, Tifton, GA 31794 USA.
[Bradley, Kevin W.] Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA.
[Frisvold, George] Univ Arizona, Dept Agr & Resource Econ, Tucson, AZ 85721 USA.
[Powles, Stephen B.] Univ Western Australia, Western Australian Herbicide Resistance Initiat, Crawley, WA 6009, Australia.
[Witt, William W.; Barrett, Michael] Univ Kentucky, Dept Plant & Soil Sci, Lexington, KY 40546 USA.
RP Norsworthy, JK (reprint author), Univ Arkansas, Dept Crop Soil & Environm Sci, 1366 W Atheimer Dr, Fayetteville, AR 72704 USA.
EM jnorswor@uark.edu
RI Llewellyn, Rick/F-8068-2010; Webster, Theodore/A-4468-2009; CSIRO,
SAF/H-3134-2013
OI Llewellyn, Rick/0000-0002-4152-7699; Webster,
Theodore/0000-0002-8259-2059;
FU United States Department of Agriculture's (USDA) Animal and Plant Health
Inspection Service [09-2000-0050-CA]
FX Improvements made to this document by Marilyn McClelland, Muthukumar
Bagavathiannan, James Anderson, and two anonymous reviewers are
gratefully appreciated. Support for preparation of this document was
provided to the WSSA by the USDA Animal and Plant Health Inspection
Service. This publication was supported in part by the United States
Department of Agriculture's (USDA) Animal and Plant Health Inspection
Service Agreement Number 09-2000-0050-CA.
NR 366
TC 147
Z9 148
U1 18
U2 112
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0043-1745
EI 1550-2759
J9 WEED SCI
JI Weed Sci.
PY 2012
VL 60
SI SI
BP 31
EP 62
DI 10.1614/WS-D-11-00155.1
PG 32
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA 988XA
UT WOS:000307523600003
ER
PT J
AU Alkhaier, F
Flerchinger, GN
Su, Z
AF Alkhaier, F.
Flerchinger, G. N.
Su, Z.
TI Shallow groundwater effect on land surface temperature and surface
energy balance under bare soil conditions: modeling and description
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID GEIGER CLIMATE CLASSIFICATION; STOCHASTIC WEATHER SIMULATION; SUBSURFACE
TEMPERATURE; WORLD MAP; WATER; HEAT; MOISTURE; INFILTRATION; AQUIFERS;
SEBS
AB Understanding when and how groundwater affects surface temperature and energy fluxes is significant for utilizing remote sensing in groundwater studies and for integrating aquifers within land surface models. To investigate the shallow groundwater effect under bare soil conditions, we numerically exposed two soil profiles to identical metrological forcing. One of the profiles had shallow groundwater. The different responses that the two profiles manifested were inspected regarding soil moisture, temperature and energy balance at the land surface. The findings showed that the two profiles differed in three aspects: the absorbed and emitted amounts of energy, the portioning out of the available energy and the heat fluency in the soil. We concluded that due to their lower albedo, shallow groundwater areas reflect less shortwave radiation and consequently get a higher magnitude of net radiation. When potential evaporation demand is sufficiently high, a large portion of the energy received by these areas is consumed for evaporation. This increases the latent heat flux and reduces the energy that could have heated the soil. Consequently, lower magnitudes of both sensible and ground heat fluxes are caused to occur. The higher soil thermal conductivity in shallow groundwater areas facilitates heat transfer between the top soil and the subsurface, i.e. soil subsurface is more thermally connected to the atmosphere. For the reliability of remote sensors in detecting shallow groundwater effect, it was concluded that this effect can be sufficiently clear to be detected if at least one of the following conditions occurs: high potential evaporation and high contrast between day and night temperatures. Under these conditions, most day and night hours are suitable for shallow groundwater depth detection.
C1 [Alkhaier, F.; Su, Z.] Univ Twente, Fac Geoinformat Sci & Earth Observat, Dept Water Resources, NL-7500 AE Enschede, Netherlands.
[Flerchinger, G. N.] USDA, NW Watershed Res Ctr, Washington, DC 20250 USA.
RP Alkhaier, F (reprint author), Univ Twente, Fac Geoinformat Sci & Earth Observat, Dept Water Resources, POB 217, NL-7500 AE Enschede, Netherlands.
EM khaier@itc.nl
RI Su, Z. (Bob)/D-4383-2009
NR 54
TC 7
Z9 8
U1 0
U2 18
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 7
BP 1817
EP 1831
DI 10.5194/hess-16-1817-2012
PG 15
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 981NX
UT WOS:000306976200002
ER
PT J
AU Alkhaier, F
Su, Z
Flerchinger, GN
AF Alkhaier, F.
Su, Z.
Flerchinger, G. N.
TI Reconnoitering the effect of shallow groundwater on land surface
temperature and surface energy balance using MODIS and SEBS
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID GEIGER CLIMATE CLASSIFICATION; SYSTEM SEBS; YELLOW-RIVER; WORLD MAP;
HEAT-FLUX; EVAPOTRANSPIRATION; IMAGERY; MODEL; WATER; AREA
AB The possibility of observing shallow groundwater depth and areal extent using satellite measurements can support groundwater models and vast irrigation systems management. Moreover, these measurements can help to include the effect of shallow groundwater on surface energy balance within land surface models and climate studies, which broadens the methods that yield more reliable and informative results. To examine the capacity of MODIS in detecting the effect of shallow groundwater on land surface temperature and the surface energy balance in an area within Al-Balikh River basin in northern Syria, we studied the interrelationship between in-situ measured water table depths and land surface temperatures measured by MODIS. We, also, used the Surface Energy Balance System (SEBS) to calculate surface energy fluxes, evaporative fraction and daily evaporation, and inspected their relationships with water table depths. We found out that the daytime temperature increased while the nighttime temperature decreased when the depth of the water table increased. And, when the water table depth increased, net radiation, latent and ground heat fluxes, evaporative fraction and daily evaporation decreased, while sensible heat flux increased. This concords with the findings of a companion paper (Alkhaier et al., 2012). The observed clear relationships were the result of meeting both conditions that were concluded in the companion paper, i.e. high potential evaporation and big contrast in day-night temperature. Moreover, the prevailing conditions in this study area helped SEBS to yield accurate estimates. Under bare soil conditions and under the prevailing weather conditions, we conclude that MODIS is suitable for detecting the effect of shallow groundwater because it has proper imaging times and adequate sensor accuracy; nevertheless, its coarse spatial resolution is disadvantageous.
C1 [Alkhaier, F.; Su, Z.] Univ Twente, Fac Geoinformat Sci & Earth Observat, Dept Water Resources, NL-7500 AE Enschede, Netherlands.
[Flerchinger, G. N.] USDA, NW Watershed Res Ctr, Washington, DC 20250 USA.
RP Alkhaier, F (reprint author), Univ Twente, Fac Geoinformat Sci & Earth Observat, Dept Water Resources, POB 217, NL-7500 AE Enschede, Netherlands.
EM khaier@itc.nl
RI Su, Z. (Bob)/D-4383-2009
NR 40
TC 9
Z9 11
U1 3
U2 17
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 7
BP 1833
EP 1844
DI 10.5194/hess-16-1833-2012
PG 12
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 981NX
UT WOS:000306976200003
ER
PT J
AU Thies, WG
Westlind, DJ
AF Thies, Walter G.
Westlind, Douglas J.
TI Validating the Malheur model for predicting ponderosa pine post-fire
mortality using 24 fires in the Pacific Northwest, USA
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE Blue Mountains; delayed mortality; large trees
ID TREE MORTALITY; NORTHERN ARIZONA; PRESCRIBED BURN; EASTERN OREGON;
SIERRA-NEVADA; DOUGLAS-FIR; FORESTS; SEASON; SEVERITY; CONIFERS
AB Fires, whether intentionally or accidentally set, commonly occur in western interior forests of the US. Following fire, managers need the ability to predict mortality of individual trees based on easily observed characteristics. Previously, a two-factor model using crown scorch and bole scorch proportions was developed with data from 3415 trees for predicting the probability of ponderosa pine (Pinus ponderosa Dougl. ex Laws.) mortality following prescribed fire. Here, we report validation of that model for broader application using data from 10 109 ponderosa pines in 17 prescribed fires and 7 wildfires, observed for 3 years post-fire, from east of the Cascade Range crest in Washington, Oregon and northern California. The overall rate of correct classification was 87.1% and the rate of correctly predicting mortality was 80.1%. Similar accuracy is reported when testing the model for small trees (<53.3-cm diameter at breast height), wildfire, prescribed fire, and when using a field guide that simplifies application of the model. For large trees (>= 53.3-cm diameter at breast height), the overall rate of correct prediction was 93.6% and the rate of correctly predicting mortality was 65.2%. These results suggest the Malheur model is useful for predicting ponderosa pine mortality following fires in this region.
C1 [Thies, Walter G.; Westlind, Douglas J.] US Forest Serv, USDA, Pacific NW Res Stn, Forestry Sci Lab, Corvallis, OR 97331 USA.
RP Thies, WG (reprint author), US Forest Serv, USDA, Pacific NW Res Stn, Forestry Sci Lab, 3200 Jefferson Way, Corvallis, OR 97331 USA.
EM wthies@fs.fed.us
FU Forest Health Protection of the USDA Forest Service through the Special
Technology Development Program; Joint Fire Sciences Program; Western
Wildland Environmental Threat Assessment Center; Pacific Northwest
Research Station
FX Creation of the Malheur model has taken a sustained effort from 1996
through 2008 on the part of many individuals through a variety of
funding channels. The authors thank the Malheur NF and the Emigrant
Creek Ranger District (RD) for their support throughout this effort.
Without their constant and unselfish support, this project would not
have been possible. We thank US Forest Service personnel who
participated in collecting data for validation of the field guide from
the following units: Klamath NF, Fremont-Winema NF (Bly RD, Lakeview
RD), Malheur NF (Prairie City RD and Emigrant Creek RD), Umatilla NF,
Okanogan-Wenatchee NF and the Colville NF. Fieldwork was conducted with
funds provided by Forest Health Protection of the USDA Forest Service
through the Special Technology Development Program, the Joint Fire
Sciences Program, the Western Wildland Environmental Threat Assessment
Center and the Pacific Northwest Research Station. We thank crew leaders
Cyrus Curry, Steve Swenson, Briana Catton and Angie Cirello and the many
members of our field crews who worked for 8 years to collect the
validation data. Special thanks to Greg Brenner of Pacific Analytics for
statistical consulting and support on this paper. Finally, we thank
Michelle Buonopane, Russell Graham, Rick Kelsey, Mark Loewen and Charles
G. Shaw III for review and helpful comments during manuscript
preparation.
NR 47
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PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 5
BP 572
EP 582
DI 10.1071/WF10091
PG 11
WC Forestry
SC Forestry
GA 984FJ
UT WOS:000307175200011
ER
PT J
AU Jin, S
Chen, SC
AF Jin, Sen
Chen, Shyh-Chin
TI Application of QuickBird imagery in fuel load estimation in the
Daxinganling region, China
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE remote sensing; shadow fraction
ID FOREST STRUCTURE; WILDLAND FUELS; MODELS; BIOMASS; LIDAR; USA
AB A high spatial resolution QuickBird satellite image and a low spatial but high spectral resolution Landsat Thermatic Mapper image were used to linearly regress fuel loads of 70 plots with size 30 x 30m over the Daxinganling region of north-east China. The results were compared with loads from field surveys and from regression estimations by surveyed stand characteristics. The results show that fuel loads were related to stand characteristics, such as stand mean diameter at breast height and stand height. As the QuickBird image using the shadow fraction method represented the stand characteristics well, fuel loads were well estimated from the QuickBird image. QuickBird estimations outperformed those from the lower spatial resolution Thermatic Mapper image. For many fuel classes, the QuickBird estimations were as good as those regressed from surveyed stand characteristics, and thus similar to the surveyed fine and total dead fuel loads. However, coarse fuel loads were not estimated as well using both satellite images owing to their intrinsic low association with stand characteristics. Despite this limitation in estimating coarse fuels, very-high-resolution images such as QuickBird are still valuable in estimating fine fuels, which are critically important in the practice of fire management.
C1 [Jin, Sen] NE Forestry Univ, Coll Forestry, Harbin 150040, Heilongjiang Pr, Peoples R China.
[Chen, Shyh-Chin] US Forest Serv, Pacific SW Res Stn, USDA, Riverside, CA 92507 USA.
RP Jin, S (reprint author), NE Forestry Univ, Coll Forestry, Harbin 150040, Heilongjiang Pr, Peoples R China.
EM jins-cf@nefu.edu.cn
FU China Ministry of Education [200804002, NCET-10-0278]; Postdoctoral
grant of Heilongjiang Province; China National Nature Science Foundation
[30571508]
FX The research was jointly supported by Forestry Public Interest grant
number 200804002, NECT (New Century Excellent Talent) grant NCET-10-0278
from the China Ministry of Education, a Postdoctoral grant of
Heilongjiang Province, and China National Nature Science Foundation
grant number 30571508. This manuscript was co-prepared by a US
government employee as part of his official duties, is not subject to
copyright and is in the public domain. Opinions expressed in this
publication may not necessarily reflect the position of the USDA. The
use of trade names is for reader information and does not imply USDA
endorsement of any product or service. We are indebted to the staff at
the Yanjiang Forest Farm, Tahe Forest Bureau, Daxinganling Region,
Heilongjiang Province, for their support in the fieldwork. We also
extend our gratitude to Ms Diane Boomer for her thorough effort in
improving the readability of the manuscript. We thank two anonymous
reviewers for their very constructive comments and suggestions.
NR 37
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PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 5
BP 583
EP 590
DI 10.1071/WF11018
PG 8
WC Forestry
SC Forestry
GA 984FJ
UT WOS:000307175200012
ER
PT J
AU Hyde, JC
Smith, AMS
Ottmar, RD
AF Hyde, Joshua C.
Smith, Alistair M. S.
Ottmar, Roger D.
TI Properties affecting the consumption of sound and rotten coarse woody
debris in northern Idaho: a preliminary investigation using laboratory
fires
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
ID EUCALYPT FOREST-FIRES; FUEL CONSUMPTION; COMBUSTION; MODELS; DECAY;
ASSOCIATION; MORTALITY; BIOMASS; WHITE; HEAT
AB This study evaluates the consumption of coarse woody debris in various states of decay. Samples from a northern Idaho mixed-conifer forest were classified using three different classification methods, ignited with two different ignition methods and consumption was recorded. Intrinsic properties that change with decay were measured including carbon to nitrogen ratio, density, heat content, lignin content, moisture content and surface area-to-volume ratio. Consumption for logs in different stages of decay is reported with characterisation of wood properties. Results indicate very decayed coarse woody debris is likely to be consumed to a substantially greater degree than sound coarse woody debris given similar conditions. High consumption occurred in debris with low-density, high-lignin content and high gravimetric heat content; however, lignin content and density showed the highest correlation with consumption. The Maser classification method grouped very rotten logs with high consumption into decay class 4 and the remainder into class 3. Trends in consumption were similar regardless of ignition; however low-intensity long-duration ignition produced higher consumption values. Focus on physical properties is recommended for predictive purposes over any classification method. Logs of other species and in regions with different decomposition and combustion dynamics may display different property ranges and consumption results.
C1 [Hyde, Joshua C.; Smith, Alistair M. S.] Univ Idaho, Dept Forest Rangeland & Fire Sci, Coll Nat Resources, Moscow, ID 83844 USA.
[Ottmar, Roger D.] US Forest Serv, Pacific Wildland Fire Sci Lab, USDA, Seattle, WA 98103 USA.
RP Hyde, JC (reprint author), Univ Idaho, Dept Forest Rangeland & Fire Sci, Coll Nat Resources, POB 441133, Moscow, ID 83844 USA.
EM jhyde@uidaho.edu
RI Smith, Alistair/I-3162-2014
OI Smith, Alistair/0000-0003-0071-9958
FU National Wildfire Coordinating Group (NWCG) Smoke Committee (SmoC) via
the National Park Service; National Science Foundation (NSF) Idaho
EPSCoR Program; National Science Foundation [EPS-0814387]; Joint Fire
Sciences Program [07-2-1-60]
FX This work was supported with funding from the National Wildfire
Coordinating Group (NWCG) Smoke Committee (SmoC) via the National Park
Service. This work was partially supported by the National Science
Foundation (NSF) Idaho EPSCoR Program and by the National Science
Foundation under award number EPS-0814387. Partial funding support was
received via the Joint Fire Sciences Program under award number
07-2-1-60. We would also like to acknowledge the input provided by our
reviewers and the statistical expertise of Maureen Kennedy and the US
Forest Service Pacific Northwest research Station, Pacific Wildland Fire
Research Laboratory.
NR 49
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PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 5
BP 596
EP 608
DI 10.1071/WF11016
PG 13
WC Forestry
SC Forestry
GA 984FJ
UT WOS:000307175200014
ER
PT J
AU Park, JB
AF Park, Jae B.
TI Synthesis, biological activities and bioavailability of moschamine, a
safflomide-type phenylpropenoic acid amide found in Centaurea cyanus
SO NATURAL PRODUCT RESEARCH
LA English
DT Article
DE moschamine synthesis; Centaurea cyanus; NMR; serotoninergic and
cyclooxygenase (COX) inhibitory activities; HPLC; bioavailability
ID INDOLE ALKALOIDS; CAMP FORMATION; RECEPTOR; INHIBITION; DERIVATIVES;
SEEDS
AB Moschamine is a phenylpropenoic acid amide found in plants. In this article, the synthesis and two biological activities (serotoninergic and cyclooxygenase (COX) inhibitory activities) and bioavailability of moschamine were described. Moschamine was synthesised and confirmed using NMR spectroscopic methods. Using the moschamine synthesised, serotoninergic and COX inhibitory activities were investigated. At the concentration of 10 mu mol L-1, moschamine was able to inhibit forskolin-stimulated cAMP formation by 25% (p < 0.015), via inhibiting serotonin receptors in the OK cells. The inhibition was repressed by two 5-HT1 antagonists (Nan-190 and spiperone), suggesting that moschamine may suppress cAMP formation via binding to 5-HT1 receptors in the cells. Also, moschamine was a very potent compound that is able to inhibit COX-I by 58% (p < 0.012) and COX-II by 54% (p < 0.014), at the concentration of 0.1 mu mol L-1. The oral bioavailability of moschamine was also determined in mice.
C1 ARS, Diet Genom & Immunol Lab, Beltsville Human Nutr Res Ctr, USDA, Beltsville, MD 20705 USA.
RP Park, JB (reprint author), ARS, Diet Genom & Immunol Lab, Beltsville Human Nutr Res Ctr, USDA, Room 131,Bldg 307C, Beltsville, MD 20705 USA.
EM jae.park@ars.usda.gov
NR 22
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U1 0
U2 8
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1478-6419
J9 NAT PROD RES
JI Nat. Prod. Res.
PY 2012
VL 26
IS 16
BP 1465
EP 1472
DI 10.1080/14786419.2011.562207
PG 8
WC Chemistry, Applied; Chemistry, Medicinal
SC Chemistry; Pharmacology & Pharmacy
GA 986NN
UT WOS:000307348400001
PM 21978225
ER
PT S
AU Guenther, JC
McCormick, KJ
Bryant, CM
AF Guenther, Julia C.
McCormick, Kelly J.
Bryant, Cory M.
BE Alpas, H
Smith, M
Kulmyrzaev, A
TI US Government Efforts to Build Global Food Defense Capacity
SO STRATEGIES FOR ACHIEVING FOOD SECURITY IN CENTRAL ASIA
SE NATO Science for Peace and Security Series C-Environmental Security
LA English
DT Proceedings Paper
CT NATO Advanced Training Course on Strategies for Achieving Food Security
in Central Asia
CY MAR 31-APR 02, 2011
CL Bishkek, KYRGYZSTAN
SP NATO
DE Food defense; Intentional contamination; Capacity building
AB Today's world is smaller and everything, including food, is shared amongst people in many countries. With the increase of international trade and the growing food import and export industry, it is even more important that we all take measures to ensure that the food we consume is safe from contamination - both unintentional and intentional. The chapter summarizes the U.S. Government's efforts to build global food defense capacity through cooperation and collaboration with international partners.
C1 [Guenther, Julia C.; Bryant, Cory M.] US FDA, Ctr Food Safety & Appl Nutr, Off Food Def Commun & Emergency Response, Food Def Oversight Team, College Pk, MD USA.
[McCormick, Kelly J.] USDA, Food Safety Team, Off Capac Bldg & Dev, Foreign Agr Serv, Washington, DC 20250 USA.
RP Guenther, JC (reprint author), US FDA, Ctr Food Safety & Appl Nutr, Off Food Def Commun & Emergency Response, Food Def Oversight Team, College Pk, MD USA.
EM julia.guenther@fda.hhs.gov; kelly.mccormick@fas.usda.gov;
cory.bryant@fda.hhs.gov
NR 1
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U1 0
U2 5
PU SPRINGER
PI DORDRECHT
PA PO BOX 17, 3300 AA DORDRECHT, NETHERLANDS
SN 1871-4668
BN 978-94-007-2501-0
J9 NATO SCI PEACE SECUR
JI NATO Sci. Peace Secur. Ser. C- Environ. Secur.
PY 2012
BP 109
EP +
DI 10.1007/978-94-007-2502-7_10
PG 4
WC Agricultural Engineering; Food Science & Technology; Public,
Environmental & Occupational Health
SC Agriculture; Food Science & Technology; Public, Environmental &
Occupational Health
GA BBK45
UT WOS:000307196600010
ER
PT J
AU Dunkley, KD
Callaway, TR
O'Bryan, CA
Kundinger, MM
Dunkley, CS
Anderson, RC
Nisbet, DJ
Crandall, PG
Ricke, SC
AF Dunkley, Kingsley D.
Callaway, Todd R.
O'Bryan, Corliss A.
Kundinger, Megan M.
Dunkley, Claudia S.
Anderson, Robin C.
Nisbet, David J.
Crandall, Philip G.
Ricke, Steven C.
TI Comparison of Real Time Polymerase Chain Reaction Quantification of
Changes in hilA and rpoS Gene Expression of a Salmonella Typhimurium
Poultry Isolate Grown at Fast Versus Slow Dilution Rates in an Anaerobic
Continuous Culture System
SO FOOD BIOTECHNOLOGY
LA English
DT Article
DE Salmonella Typhimurium; hilA; rpoS; continuous culture
ID ESCHERICHIA-COLI; ENTERITIDIS COLONIZATION; SELENOMONAS-RUMINANTIUM;
QUANTITATIVE PCR; INVASION GENES; AMMONIUM-SALTS; FUSION STRAIN; BATCH
CULTURE; LIQUID FLOWS; FERMENTATION
AB The objective of this study was to determine the genetic responses of a Salmonella enterica Typhimurium poultry isolate during low and high dilution rates (D) in steady state continuous culture (CC) incubations. Samples for genetic analyses were taken from a previous study where S. Typhimurium cells had been grown in two chemostats operated concurrently, which were designated as Trials 1 and 2, with eight dilution rates sampled during steady state. Real-time polymerase chain reaction (PCR) on two target genes (rpoS and hilA) was analyzed as changes in expression of the target gene relative to the reference gene (16S rRNA). At the lowest D (0.0125 h(-1)) in Trial 2, rpoS expression was more than twofold higher than the second highest relative expression. In Trial 1 hilA expression was 21.8-, 27.8-, and 21-fold higher in D 0.0125 h(-1), 0.025 h(-1), 0.05 h(-1), respectively, compared to D 0.1 h(-1), 0.54 h(-1), and 1.08 h(-1). In Trial 2, D 0.025 h(-1) and 0.27 h(-1) showed no difference in hilA expression but were significantly higher compared to other D. From these results, low glucose conditions may play an essential role in triggering rpoS induction, as well as contributing to potential virulence.
C1 [O'Bryan, Corliss A.; Crandall, Philip G.; Ricke, Steven C.] Univ Arkansas, Dept Food Sci, Fayetteville, AR 72704 USA.
[Dunkley, Kingsley D.; Kundinger, Megan M.; Dunkley, Claudia S.; Ricke, Steven C.] Texas A&M Univ, Dept Poultry Sci, College Stn, TX 77843 USA.
[Dunkley, Kingsley D.] Abraham Baldwin Agr Coll, Tifton, GA USA.
[Callaway, Todd R.; Anderson, Robin C.; Nisbet, David J.] USDA ARS, So Plains Agr Res Ctr, Food & Feed Safety Res Unit, College Stn, TX USA.
[Kundinger, Megan M.] Midstate Tech Coll, Marshfield, WI USA.
[Dunkley, Claudia S.] Univ Georgia, Dept Poultry Sci, Tifton, GA USA.
RP Ricke, SC (reprint author), Univ Arkansas, Dept Food Sci, 2650 N Young Ave, Fayetteville, AR 72704 USA.
EM sricke@uark.edu
FU USDA-NRI [2001-02675]
FX These studies were conducted with funds from USDA-NRI Grant #2001-02675
administered by Texas Agricultural Experimental Station. Thanks to
Cassie Woodward and Dr. W. K. Kim for data analysis and helpful
discussion for preparation of the manuscript.
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PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0890-5436
J9 FOOD BIOTECHNOL
JI Food Biotechnol.
PY 2012
VL 26
IS 3
BP 239
EP 251
DI 10.1080/08905436.2012.698770
PG 13
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 982XK
UT WOS:000307078500003
ER
PT J
AU Smith, BA
Brown, RL
Laberge, W
Griswold, T
AF Smith, Beverly A.
Brown, Richard L.
Laberge, Wallace
Griswold, Terry
TI A Faunistic Survey of Bees (Hymenoptera: Apoidea) in the Black Belt
Prairie of Mississippi
SO JOURNAL OF THE KANSAS ENTOMOLOGICAL SOCIETY
LA English
DT Article
DE Apoidea bees; Black Belt Prairie; disjunct species; flight periods;
floral hosts; Mississippi
ID LASIOGLOSSUM DIALICTUS; DISJUNCT DISTRIBUTION; UNITED-STATES; ALABAMA;
LEPIDOPTERA; HALICTIDAE; AMERICA
AB A survey of bees (Apoidea) in the Black Belt Prairie of northern Mississippi was conducted from 1991 to 2001. Collecting methods included netting specimens from floral hosts and use of malaise traps. The survey resulted in collection of 6138 specimens, of which 3627 were identified to 118 species. Of the 2511 unidentified specimens, the vast majority (2362) were specimens of Lasioglossum Curtis (Halictidae) in groups that are unrevised. The survey resulted in 51 new state records, increasing the total known species of bees in Mississippi to 177. Five species of Andrenidae have disjunct distributions from the Great Plains and western states. A list of the bee species in the Black Belt Prairie is provided with annotations on collection times, floral hosts, and collection methods.
C1 [Smith, Beverly A.; Brown, Richard L.] Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Mississippi State, MS 39762 USA.
[Laberge, Wallace] Illinois Nat Hist Survey, Champaign, IL 61820 USA.
[Griswold, Terry] Utah State Univ, USDA ARS Bee Biol & Systemat Lab, Logan, UT 84333 USA.
RP Smith, BA (reprint author), Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Mississippi State, MS 39762 USA.
FU Mississippi Agricultural and Experiment Station
FX The senior author thanks Dr. Clarence Collison, former head of the
Department of Entomology and Plant Pathology, for his support and
encouragement to publish this manuscript, Drs. Gerry Baker, Blake
Layton, and William Batson for their guidance as graduate committee
members, and the late Matthew MacGown for his advice. We thank Joe
MacGown for providing access to his property for surveys. Charles
Michener, Robert Brooks, and Michael Engel (University of Kansas) and
Molly Rightmyer, (Smithsonian Institution) provided or confirmed
identifications. The Mississippi Agricultural and Experiment Station
provided support for this research. This research has been approved for
publication as Journal Article No. 12086 of the Mississippi Agricultural
and Forestry Experiment Station.
NR 26
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PU KANSAS ENTOMOLOGICAL SOC
PI LAWRENCE
PA PO BOX 368, LAWRENCE, KS 66044 USA
SN 0022-8567
EI 1937-2353
J9 J KANSAS ENTOMOL SOC
JI J. Kans. Entomol. Soc.
PD JAN
PY 2012
VL 85
IS 1
BP 32
EP 47
PG 16
WC Entomology
SC Entomology
GA 983SG
UT WOS:000307138400005
ER
PT J
AU Mendonca, FS
Albuquerque, RF
Evencio-Neto, J
Freitas, SH
Doria, RGS
Boabaid, FM
Driemeier, D
Gardner, DR
Riet-Correa, F
Colodel, EM
AF Mendonca, Fabio S.
Albuquerque, Raquel F.
Evencio-Neto, Joaquim
Freitas, Silvio H.
Doria, Renata G. S.
Boabaid, Fabiana M.
Driemeier, David
Gardner, Dale R.
Riet-Correa, Franklin
Colodel, Edson M.
TI Alpha-mannosidosis in goats caused by the swainsonine-containing plant
Ipomoea verbascoidea
SO JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION
LA English
DT Article
DE Calystegines; goats; lectin histochemistry; plant poisoning; storage
disease; swainsonine
ID LYSOSOMAL STORAGE DISEASE; GLYCOSIDASE INHIBITORS; NORTHEASTERN BRAZIL;
POISONOUS PLANT; LOCOWEED; SHEEP; CONVOLVULACEAE; CARNEA; SERICOPHYLLA;
IDENTIFICATION
AB A disease of the nervous system is reported in goats in the semiarid region of northeastern Brazil. Histological examination showed diffuse vacuolation of neurons and epithelial cells of the pancreas, thyroid, renal tubules, and liver. The swainsonine-containing plant Ipomoea verbascoidea was found on both farms where the goats originated. This plant was experimentally administered to 3 goats, inducing clinical signs and histologic lesions similar to those observed in spontaneous cases. On the lectin histochemical analysis, cerebellar cells and pancreatic acinar cells gave positive reactions to Triticum vulgaris agglutinin (WGA), succinylated Triticum vulgaris agglutinin (sWGA), Lens culinaris agglutinin (LCA), Canavalia ensiformis agglutinin (ConA), Pisum sativum agglutinin (PSA), Ricinus communis agglutinin (RCA(120)), Arachis hypogaea agglutinin (PNA), and Phaseolus vulgaris erythroagglutinin (PHA-E) suggesting storage of a-fucose, alpha-D-mannose, alpha-D-glucose, beta-D-N-acetyl-glucosamine, N-acetyl-galactosamine, and acetyl-neuraminic acid. This pattern of lectin staining partially agrees with results previously reported for poisoning by swainsonine-containing plants. The chemical analysis of dried leaves of I. verbascoidea detected swainsonine (0.017%), calystegine B-1 (0.16%), calystegine B-2 (0.05%), and calystegine C-1 (0.34%). It is concluded that I. verbascoidea causes alpha-mannosidosis in goats.
C1 [Mendonca, Fabio S.; Albuquerque, Raquel F.; Evencio-Neto, Joaquim] Univ Fed Rural Pernambuco, Dept Anim Morphol & Physiol, BR-52171900 Recife, PE, Brazil.
[Freitas, Silvio H.; Doria, Renata G. S.] Univ Cuiaba, Fac Vet Med, Cuiaba, Mato Grosso, Brazil.
[Boabaid, Fabiana M.; Driemeier, David] Univ Fed Rio Grande do Sul, Fac Vet Med, Porto Alegre, RS, Brazil.
[Gardner, Dale R.] ARS, Poisonous Plants Res Lab, USDA, Logan, UT USA.
[Riet-Correa, Franklin] Univ Fed Campina Grande, Vet Hosp, Ctr Saude & Tecnol Rural, Patos de Minas, Paraiba, Brazil.
[Colodel, Edson M.] Univ Fed Mato Grosso, Dept Vet Clin, Cuiaba, Mato Grosso, Brazil.
RP Mendonca, FS (reprint author), Univ Fed Rural Pernambuco, Dept Anim Morphol & Physiol, BR-52171900 Recife, PE, Brazil.
EM mendonca@dmfa.ufrpe.br
RI Mendonca, F./K-4436-2012; Driemeier, David/H-3461-2012; Doria,
Renata/J-2948-2013; COLODEL, EDSON MOLETA/I-4798-2015
OI Mendonca, F./0000-0001-5641-0883; Driemeier, David/0000-0003-3766-0654;
Doria, Renata/0000-0002-4275-0358;
FU Brazilian Foundation Agency FACEPE [0760-5.05/09]
FX Funding was provide by the Brazilian Foundation Agency FACEPE (grant no.
0760-5.05/09).
NR 32
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U1 3
U2 11
PU SAGE PUBLICATIONS INC
PI THOUSAND OAKS
PA 2455 TELLER RD, THOUSAND OAKS, CA 91320 USA
SN 1040-6387
J9 J VET DIAGN INVEST
JI J. Vet. Diagn. Invest.
PD JAN
PY 2012
VL 24
IS 1
BP 90
EP 95
DI 10.1177/1040638711425948
PG 6
WC Veterinary Sciences
SC Veterinary Sciences
GA 983IH
UT WOS:000307112500011
PM 22362938
ER
PT J
AU Jackson, MA
Jaronski, ST
AF Jackson, Mark A.
Jaronski, Stefan T.
TI Development of pilot-scale fermentation and stabilisation processes for
the production of microsclerotia of the entomopathogenic fungus
Metarhizium brunneum strain F52
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE sclerotia; bioinsecticide; liquid fermentation; air-drying; biocontrol
ID LIQUID CULTURE PRODUCTION; COLLETOTRICHUM-TRUNCATUM;
PAECILOMYCES-FUMOSOROSEUS; ANISOPLIAE; MORPHOLOGY; MELANINS; GRANULES;
CONIDIA; BLASTOSPORES; ANTHOMYIIDAE
AB Using 100 L stirred-tank bioreactors, we evaluated the effect of fermentation parameters and drying protocols on the production and stabilisation of microsclerotia (MS) of the entomopathogenic fungus Metarhizium brunneum (formerly M. anisopliae F52). Results showed that stirred-tank bioreactors can be used to mass produce stable MS of Metarhizium and that culturing and drying protocols significantly affected MS yield and stability. Length of fermentation (4 7 days) for Metarhizium cultures had no significant impact on biomass accumulation, MS formation or the storage stability of the air-dried MS granules. Although cultures of Metarhizium grown on media with a carbon-to-nitrogen (C:N) ratio of 30:1 produced significantly more biomass when compared to cultures grown in media with a C:N ratio of 50:1, MS formation and desiccation tolerance following drying were similar. After storage for 1 year at 4 degrees C, conidia production by air-dried MS granules from 50:1 media was significantly higher compared to MS granules from 30:1 media. The addition of diatomaceous earth (DE) to cultures of Metarhizium prior to drying at rates of 0-60 g L-1 had no significant effect on MS desiccation tolerance but did impact conidia production. Air-dried MS granules without DE produced significantly more conidia g(-1) during the first 4 months of storage, but after 1 year, conidia production was similar regardless of DE content of the MS granule. Microsclerotial granules with higher moisture levels (2.6-5.0% w/w) produced significantly more conidia immediately after drying and MS granules with low moisture (0-2.5% w/w) produced more conidia after 12 months storage.
C1 [Jackson, Mark A.] ARS, USDA, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL USA.
[Jaronski, Stefan T.] ARS, USDA, Pest Management Res Unit, No Plains Agr Res Lab, Sidney, MT USA.
RP Jackson, MA (reprint author), ARS, USDA, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL USA.
EM mark.jackson@ars.usda.gov
NR 43
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U1 1
U2 17
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 8
BP 915
EP 930
DI 10.1080/09583157.2012.696578
PG 16
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 975SC
UT WOS:000306530300005
ER
PT J
AU Day, WH
Hoelmer, KA
AF Day, W. H.
Hoelmer, K. A.
TI Impact of the introduced parasitoid Peristenus digoneutis (Hymenoptera:
Braconidae) on tarnished plant bug (Hemiptera: Miridae) infesting
strawberries in northwestern New Jersey, USA
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE tarnished plant bug; biological control; organic strawberries
ID LYGUS-LINEOLARIS PALISOT; BIOLOGICAL-CONTROL; NORTHEASTERN USA;
UNITED-STATES; ALFALFA; FIELDS; ESTABLISHMENT; ABUNDANCE; INJURY; SPP.
AB Lygus lineolaris populations in the northeastern USA have been markedly reduced by the introduced parasitoid Peristenus digoneutis. A 3-year study in NJ where P. digoneutis has been established for many years demonstrated that parasitism of Lygus nymphs in strawberries averaged 30% (mostly P. digoneutis). Strawberry damage by L. lineolaris ranged from 19 to 33%.
C1 [Day, W. H.; Hoelmer, K. A.] USDA ARS, Beneficial Insects Introduct Res Unit, Newark, DE USA.
RP Hoelmer, KA (reprint author), USDA ARS, Beneficial Insects Introduct Res Unit, Newark, DE USA.
EM kim.hoelmer@ars.usda.gov
NR 20
TC 0
Z9 0
U1 4
U2 12
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
EI 1360-0478
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 8
BP 975
EP 979
DI 10.1080/09583157.2012.700695
PG 5
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 975SC
UT WOS:000306530300010
ER
PT J
AU Terzi, E
Dogu, D
Kurt, F
Kartal, SN
Green, F
AF Terzi, Evren
Dogu, Dilek
Kurt, Feyza
Kartal, S. Nami
Green, Frederick, III
TI EFFECTS OF LEACHING MEDIUM ON LEACHABILITY OF WOOD PRESERVING N '
N-HYDROXYNAPTHALIMIDE (NHA)
SO BIORESOURCES
LA English
DT Article
DE Leaching; Leaching medium; NHA; N ' N-hydroxynapthalimide; Distilled
water; Tap water; Seawater; Rainwater; Sparkling water
ID SOUTHERN PINE; CCA; MICROASSAY; CHROMIUM; RELEASE; COPPER
AB Laboratory leaching test procedures usually call for the use of distilled or deionized water; however, treated wood is generally exposed to different types of water, soil, and weather conditions. Thus, factors such as salinity, hardness, pH, temperature etc. might be important in the release of different amounts of biocide compounds. This study evaluates the release of the sodium salt of the calcium precipitating and wood preserving agent N'N-hydroxynapthalimide (NHA) from treated wood specimens exposed to different types of leaching media. Scots pine wood specimens were treated with NHA at three different solution strengths. Treated specimens were then leached with distilled water, tap water, rain water, synthetic sea water, natural sparkling water, or 1% CaCO3 solutions for 2 weeks. Leaching with higher ion concentrations reduced NHA losses from the specimens in comparison with that of distilled water and rain water leaching trials. Microscopic evaluations were in good accordance with the results from leaching trials, revealing NHA precipitation onto the tori of pit elements and tracheids. In distilled water and rain water leaching trials, less NHA precipitation on to the tori of pit membranes and tracheid surfaces was observed, whilst the specimens leached with tap water, 1% CaCO3, sea water, and sparkling water showed higher NHA precipitations on the cell elements. We conclude that the leaching of NHA from treated wood can be decreased by precipitation with ions coming from tap water, sea water, sparkling water, and 1% CaCO3 solutions as leaching media rather than distilled water or rain water with no or much less ion composition.
C1 [Terzi, Evren; Dogu, Dilek; Kurt, Feyza; Kartal, S. Nami] Istanbul Univ, Fac Forestry, Dept Forest Biol & Wood Protect Technol, TR-34473 Istanbul, Turkey.
[Green, Frederick, III] US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
RP Kartal, SN (reprint author), Istanbul Univ, Fac Forestry, Dept Forest Biol & Wood Protect Technol, TR-34473 Istanbul, Turkey.
EM snkartal@istanbul.edu.tr
RI Kartal, Nami/E-6516-2013
NR 18
TC 2
Z9 2
U1 0
U2 8
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 2
BP 1419
EP 1430
PG 12
WC Materials Science, Paper & Wood
SC Materials Science
GA 975BM
UT WOS:000306481700005
ER
PT J
AU Chen, Y
Fan, YM
Tshabalala, MA
Stark, NM
Gao, JM
Liu, RJ
AF Chen, Yao
Fan, Yongming
Tshabalala, Mandla A.
Stark, Nicole M.
Gao, Jianmin
Liu, Ruijie
TI OPTICAL PROPERTY ANALYSIS OF THERMALLY AND PHOTOLYTICALLY AGED
EUCALYPTUS CAMALDULENSIS CHEMITHERMOMECHANICAL PULP (CTMP)
SO BIORESOURCES
LA English
DT Review
DE CTMP; Pulp; Optical properties; Yellowing; Light irradiation; Heat
treatment
ID SINGLET OXYGEN DEGRADATION; LIGHT-IRRADIATED WOOD; MECHANICAL PULPS;
SPRUCE WOOD; HEAT-TREATMENT; PART 2; LIGNIN; PHOTODEGRADATION; COLOR;
SPECTROSCOPY
AB To investigate the optical properties of chemithermomechanical pulp (CTMP) from Eucalyptus camaldulensis, one group of samples of CTMP was aged by heating, and another group was first subjected to bleaching with different bleaching agents, and then aging by exposure to sunlight. Chromophores were analyzed using diffuse reflectance UV-Vis spectra (DRUV), and the brightness and color parameters (L*, a*, b*) were analyzed using colorimetry. Results showed that the color reactions of the pulp, upon heating, were enhanced in the presence of moisture. There was a linear relationship between the pulp initial moisture content (MC) and the intensity of UV-Vis absorption. The contribution of different chromophores to pulp color was analyzed with the help of bleaching agents: hydrogen peroxide, sodium dithionite, and sodium borohydride. Sodium borohydride and hydrogen peroxide treatments resulted in a decrease in the absorption band at 280 nm along with the shoulder near 320 nm, which could be attributed to conjugated C=O and C=C systems. Similarly, sodium dithionite treatment also led to a decrease in absorption of the carbonyls and double bonds conjugated with aromatic double bonds. The chromaticity parameters of bleached pulp increased after exposure to sunlight. A correspondingly higher concentration of quinoid structures was found.
C1 [Chen, Yao; Fan, Yongming; Gao, Jianmin; Liu, Ruijie] Beijing Forestry Univ, Coll Mat Sci & Technol, Beijing 100083, Peoples R China.
[Tshabalala, Mandla A.; Stark, Nicole M.] US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
RP Fan, YM (reprint author), Beijing Forestry Univ, Coll Mat Sci & Technol, Beijing 100083, Peoples R China.
EM fanym@bjfu.edu.cn
FU National Natural Science Foundation of China [31070490]
FX The authors wish to thank China National Pulp and Paper Research
Institute for their Eucalyptus camaldulensis CTMP pulp supply and Dr.
Umesh Agarwal and Dr. David Vahey for valuable suggestions. Financial
support was provided by the National Natural Science Foundation of China
(Series number of the project: 31070490).
NR 47
TC 4
Z9 4
U1 0
U2 6
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 2
BP 1474
EP 1487
PG 14
WC Materials Science, Paper & Wood
SC Materials Science
GA 975BM
UT WOS:000306481700010
ER
PT J
AU Liu, ZJ
Jiang, ZH
Cai, ZY
Fei, BH
Yu, Y
Liu, XE
AF Liu, Zhijia
Jiang, Zehui
Cai, Zhiyong
Fei, Benhua
Yu, Yan
Liu, Xing'e
TI DYNAMIC MECHANICAL THERMAL ANALYSIS OF MOSO BAMBOO (Phyllostachys
heterocycla) AT DIFFERENT MOISTURE CONTENT
SO BIORESOURCES
LA English
DT Review
DE Biomass; Bamboo; Bamboo pellet; Thermal-mechanical behavior; Glass
transition
ID VISCOELASTIC PROPERTIES; WOOD
AB Bamboo is a type of biomass materials that has great potential as a bio-energy resource in China. The thermal-mechanical behavior of bamboo plays an important role in the formation process of pellets. To investigate the effect of moisture content (MC) on thermal-mechanical behavior of bamboo, the storage modulus and loss factor of moso bamboo was determined using dynamic mechanical thermal analysis (DMTA) from -50 to 150 degrees C. The experimental results showed that the general feature of bamboo thermal-mechanical properties with temperature is similar to other cellulosic materials, and they are affected by MC. A substantial decrease of storage modulus over the entire temperature range implies that bamboo underwent a glass to rubber transition. Bamboo, at lower MC, has a higher storage modulus, which decreases the mechanical strength of pellets. The loss factor exhibited two major transitions for all samples. There was an alpha-transition (alpha(1)), attributed to glass transition of lignin, peaking in a higher temperature range. The second major relaxation (alpha(2)), located in a lower temperature range, was attributed to glass transition of hemicelluloses. Activating lignin and hemicelluloses using moisture and temperature in the temperature range of glass transition can be very helpful to achieve durable particle-particle bonding.
C1 [Liu, Zhijia; Jiang, Zehui; Fei, Benhua; Yu, Yan; Liu, Xing'e] Int Ctr Bamboo & Rattan, Beijing 100102, Peoples R China.
[Liu, Zhijia; Cai, Zhiyong] US Forest Serv, Forest Prod Lab, USDA, Madison, WI 53705 USA.
RP Jiang, ZH (reprint author), Int Ctr Bamboo & Rattan, Beijing 100102, Peoples R China.
EM jiangzehui@icbr.ac.cn; zcai@fs.fed.us
FU Development and demonstration of bamboo/wood composite LVL and wallboard
[[2008] 16]; Basic Scientific Research Funds of International Centre for
Bamboo and Rattan [1632012002]
FX This research was financially supported by 'Development and
demonstration of bamboo/wood composite LVL and wallboard' (Grant No.
[2008] 16) and 'Basic Scientific Research Funds of International Centre
for Bamboo and Rattan' (Grant No. 1632012002).
NR 21
TC 9
Z9 12
U1 0
U2 14
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 2
BP 1548
EP 1557
PG 10
WC Materials Science, Paper & Wood
SC Materials Science
GA 975BM
UT WOS:000306481700016
ER
PT J
AU Chen, Y
Gao, JM
Fan, YM
Tshabalala, MA
Stark, NM
AF Chen, Yao
Gao, Jianmin
Fan, Yongming
Tshabalala, Mandla A.
Stark, Nicole M.
TI HEAT-INDUCED CHEMICAL AND COLOR CHANGES OF EXTRACTIVE-FREE BLACK LOCUST
(ROBINIA PSEUDOACACIA) WOOD
SO BIORESOURCES
LA English
DT Article
DE Heat treatment; Wood; Chemical changes; Color; C-13-NMR; FTIR-ATR; DRUV
ID THERMALLY MODIFIED WOOD; FTIR SPECTROSCOPY; SPRUCE WOOD; NMR; LIGNIN;
RESONANCE; SOFTWOOD; BEECH; IR
AB To investigate chemical and color changes of the polymeric constituents of black locust (Robinia pseudoacacia) wood during heat treatment, extractive-free wood flour was conditioned to 30% initial moisture content (MC) and heated for 24 h at 120 degrees C in either an oxygen or nitrogen atmosphere. The color change was measured using the CIELAB color system. Chemical changes of the wood components were determined by means of solid state cross-polarization/magic angle spinning C-13-nuclear magnetic resonance (CPMAS-C-13-NMR), Fourier transform infrared (FTIR), diffuse reflectance UV-Vis (DRUV) spectroscopy, and elemental (CHN) analysis. The results showed that lightness (L-star) decreased, while chromaticity indexes (a(star) and b(star)) and chroma (C-star) increased after heat treatment. There was greater color difference (Delta E-star) in the samples heated in the presence of oxygen compared to nitrogen. CHN analysis showed an increase in hydrogen and oxygen and a decrease in carbon content. NMR spectra confirmed the cleavage of the beta-O-4 structure in the lignin, resulting in a decrease in etherified lignin units and an increase in phenolic structures. DRUV and FTIR spectra confirmed the formation of extensive conjugated structures, such as unsaturated ketones and quinones due to the cleavage of the lignin units. Formation of quinones can be attributed to heat treatment in the presence of oxygen.
C1 [Chen, Yao; Gao, Jianmin; Fan, Yongming] Beijing Forestry Univ, Coll Mat Sci & Technol, Beijing 100083, Peoples R China.
[Tshabalala, Mandla A.; Stark, Nicole M.] US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
RP Fan, YM (reprint author), Beijing Forestry Univ, Coll Mat Sci & Technol, Beijing 100083, Peoples R China.
EM fanym@bjfu.edu.cn
FU National Natural Science Foundation of China [31070490]
FX This research was supported by the National Natural Science Foundation
of China (Series number of the project: 31070490).
NR 43
TC 13
Z9 14
U1 0
U2 18
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 2
BP 2236
EP 2248
PG 13
WC Materials Science, Paper & Wood
SC Materials Science
GA 975BM
UT WOS:000306481700066
ER
PT J
AU Ballard, HL
Evans, E
Sturtevant, VE
Jakes, P
AF Ballard, Heidi L.
Evans, Emily
Sturtevant, Victoria E.
Jakes, Pamela
TI The Evolution of Smokey Bear: Environmental Education About Wildfire for
Youth
SO JOURNAL OF ENVIRONMENTAL EDUCATION
LA English
DT Article
DE hazards education; informal science education; natural resource
education; place-based education; wildfire
AB Many environmental education programs in the United States educate youth about the prevention of wildfire and its role in ecosystems. We reviewed 50 wildfire education programs for youth (WEY) in the U. S. through an Internet search and interviews with program providers. We investigated whether they reflect current wildfire science, environmental education (EE) instructional strategies, and place-based education (PBE) approaches. We found that while one-third of the programs focus exclusively on wildfire prevention, suppression, and safety topics, one-third focuses on fire ecology, management, and science, and one-third includes all these topics, mirroring evolving scientific approaches to wildfire. Also, while state and federal agencies design and disseminate much of the curricula used, 60% of WEY programs incorporate local social and ecological contexts, revealing the close relationship between WEY and PBE.
C1 [Ballard, Heidi L.] Univ Calif Davis, Sch Educ, Davis, CA 95616 USA.
[Sturtevant, Victoria E.] So Oregon Univ, Ashland, OR USA.
[Jakes, Pamela] US Forest Serv, USDA, St Paul, MN USA.
RP Ballard, HL (reprint author), Univ Calif Davis, Sch Educ, 1 Shields Ave, Davis, CA 95616 USA.
EM hballard@ucdavis.edu
NR 39
TC 1
Z9 1
U1 2
U2 16
PU ROUTLEDGE JOURNALS, TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXFORDSHIRE, ENGLAND
SN 0095-8964
EI 1940-1892
J9 J ENVIRON EDUC
JI J. Environ. Educ.
PY 2012
VL 43
IS 4
BP 227
EP 240
DI 10.1080/00958964.2011.644352
PG 14
WC Education & Educational Research; Environmental Studies
SC Education & Educational Research; Environmental Sciences & Ecology
GA 975QZ
UT WOS:000306527300002
ER
PT J
AU Long, DS
McCallum, JD
Young, FL
Lenssen, AW
AF Long, Daniel S.
McCallum, John D.
Young, Francis L.
Lenssen, Andrew W.
TI In-stream measurement of canola (Brassica napus L.) seed oil
concentration using in-line near infrared reflectance spectroscopy
SO JOURNAL OF NEAR INFRARED SPECTROSCOPY
LA English
DT Article
DE near infrared spectroscopy; seed oil concentration; in-line measurement;
canola; crushing plant
ID QUALITY; PROTEIN; COMBINE; YIELD; ACID
AB Natural variation in the seed oil concentration of oilseed crops sent to a crushing plant can impair the recovery of the oil from the seed. Consequently, there is interest in applying in-line near infrared (NIR) spectroscopy to measure the oil concentration of the seed to be processed and, in using the information obtained, to maximise expeller efficiency. The objective of this study was to determine how well in-line NIR spectroscopy could determine the seed oil concentration of canola (Brassica napus L.) when there was direct contact of the sensor head with the grain stream. Reflectance spectra from 850nm to 1650nm were obtained by sliding grain samples of canola directly across the sensor head of the Polytec 1721 NIR reflectance analyser. Reference analytical results were estimated using the NIR optical spectra as regression estimators. The resulting prediction equation with eight latent variables resulted in a coefficient of determination of 0.95, standard error of cross-validation of 0.727% and relative performance determination of 4.77. Validation results, based on site or year omission, confirmed the ability of the instrument to accurately predict seed oil concentration in a grain stream. This creates opportunities for monitoring the oil content of seed entering the expeller and using this information to adjust the expeller for maximum efficiency.
C1 [Long, Daniel S.; McCallum, John D.] ARS, USDA, Columbia Plateau Conservat Res Ctr, Pendleton, OR 97801 USA.
[Young, Francis L.] ARS, USDA, Land Management & Water Conservat Res Unit, Pullman, WA USA.
[Lenssen, Andrew W.] Iowa State Univ, Dept Agron, Ames, IA 50010 USA.
RP Long, DS (reprint author), ARS, USDA, Columbia Plateau Conservat Res Ctr, Pendleton, OR 97801 USA.
EM dan.long@ars.usda.gov
NR 28
TC 1
Z9 1
U1 1
U2 5
PU N I R PUBLICATIONS
PI CHICHESTER
PA 6 CHARLTON MILL, CHARLTON, CHICHESTER PO18 0HY, WEST SUSSEX, ENGLAND
SN 0967-0335
J9 J NEAR INFRARED SPEC
JI J. Near Infrared Spectrosc.
PY 2012
VL 20
IS 3
BP 387
EP 395
DI 10.1255/jnirs.993
PG 9
WC Chemistry, Applied; Spectroscopy
SC Chemistry; Spectroscopy
GA 969YW
UT WOS:000306096300006
ER
PT J
AU Salama, MS
Van der Velde, R
van der Woerd, HJ
Kromkamp, JC
Philippart, CJM
Joseph, AT
O'Neill, PE
Lang, RH
Gish, T
Werdell, PJ
Su, Z
AF Salama, M. S.
Van der Velde, R.
van der Woerd, H. J.
Kromkamp, J. C.
Philippart, C. J. M.
Joseph, A. T.
O'Neill, P. E.
Lang, R. H.
Gish, T.
Werdell, P. J.
Su, Z.
TI Technical Note: Calibration and validation of geophysical observation
models
SO BIOGEOSCIENCES
LA English
DT Article
ID INHERENT OPTICAL-PROPERTIES; SOIL-MOISTURE RETRIEVAL; OCEAN COLOR;
GROWTH-CYCLE; CORN; PHYTOPLANKTON; FREQUENCY; IMAGERY; WATERS
AB We present a method to calibrate and validate observational models that interrelate remotely sensed energy fluxes to geophysical variables of land and water surfaces. Coincident sets of remote sensing observation of visible and microwave radiations and geophysical data are assembled and subdivided into calibration (Cal) and validation (Val) data sets. Each Cal/Val pair is used to derive the coefficients (from the Cal set) and the accuracy (from the Val set) of the observation model. Combining the results from all Cal/Val pairs provides probability distributions of the model coefficients and model errors. The method is generic and demonstrated using comprehensive matchup sets from two very different disciplines: soil moisture and water quality. The results demonstrate that the method provides robust model coefficients and quantitative measure of the model uncertainty. This approach can be adopted for the calibration/validation of satellite products of land and water surfaces, and the resulting uncertainty can be used as input to data assimilation schemes.
C1 [Salama, M. S.; Van der Velde, R.; Su, Z.] Univ Twente, ITC, Dept Water Resources, Enschede, Netherlands.
[Salama, M. S.; Kromkamp, J. C.; Philippart, C. J. M.] Royal Netherlands Inst Sea Res NIOZ, Yerseke, Netherlands.
[van der Woerd, H. J.] Vrije Univ Amsterdam, Inst Environm Studies IVM, Amsterdam, Netherlands.
[Joseph, A. T.; O'Neill, P. E.] NASA GSFC, Hydrospher & Biospher Sci Lab, Hydrol Sci Branch 614 3, Washington, DC USA.
[Lang, R. H.] George Washington Univ, Dept Elect & Comp Engn, Washington, DC 20052 USA.
[Gish, T.] USDA ARS, Hydrol & Remote Sensing Lab, Washington, DC 20250 USA.
[Werdell, P. J.] NASA Goddard Space Flight Ctr, Ocean Ecol Branch Code 614 2, Greenbelt, MD USA.
[Werdell, P. J.] Sci Syst & Applicat Inc, Lanham, MD USA.
RP Salama, MS (reprint author), Univ Twente, ITC, Dept Water Resources, Enschede, Netherlands.
EM salama@itc.nl
RI Kromkamp, Jacco/A-7319-2013; Salama, Mhd. Suhyb/D-4173-2009; O'Neill,
Peggy/D-2904-2013; Su, Z. (Bob)/D-4383-2009; van der Velde, Rogier
/K-8623-2013; van der Woerd, Hans/K-9812-2013
OI Salama, Mhd. Suhyb/0000-0002-6670-6853; van der Velde, Rogier
/0000-0003-2157-4110; van der Woerd, Hans/0000-0002-8901-7567
FU Earth and Life Sciences (ALW) division of the Netherlands Organization
for Scientific Research (NWO)
FX The authors would like to thank NASA Ocean Biology Processing Group and
individual data contributors for maintaining and updating the SeaBASS
database. This work was supported in part by the Earth and Life Sciences
(ALW) division of the Netherlands Organization for Scientific Research
(NWO), in the framework of the National Programme Sea and Coast Research
- Changing Carrying Capacity, the IN PLACE project.
NR 32
TC 7
Z9 7
U1 0
U2 7
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1726-4170
J9 BIOGEOSCIENCES
JI Biogeosciences
PY 2012
VL 9
IS 6
BP 2195
EP 2201
DI 10.5194/bg-9-2195-2012
PG 7
WC Ecology; Geosciences, Multidisciplinary
SC Environmental Sciences & Ecology; Geology
GA 966IB
UT WOS:000305830000017
ER
PT J
AU Wiklund, E
Finstad, G
Aguiar, G
Bechtel, PJ
AF Wiklund, E.
Finstad, G.
Aguiar, G.
Bechtel, P. J.
TI Does carcass suspension technique influence reindeer (Rangifer tarandus
tarandus) meat quality attributes?
SO ANIMAL PRODUCTION SCIENCE
LA English
DT Article
DE sensory evaluation; venison; tenderness
ID ELECTRICAL-STIMULATION; TENDERNESS; BEEF; COLOR
AB In total, eight reindeer steers (ages 3-6 years old) were used in the study to evaluate the effects of carcass suspension technique on meat tenderness, colour and water-holding capacity (WHC). Carcasses were split along the spine and sides were randomly allocated to pelvic suspension (hung using a butcher hook through the obturator foramen) or normal Achilles tendon suspension (control treatment). From all 16 carcass halves, meat samples were collected from the loin (M. longissimus), inside (M. semimembranosus) and shoulder (M. triceps brachii) for sensory evaluation and measurements of shear force (tenderness). Loin samples were also evaluated for meat colour at 1 day after slaughter and for purge (WHC) after vacuum-packaged chilled storage (+2 degrees C) for 1, 2 and 3 weeks. No significant effects of carcass suspension technique were found for reindeer meat colour and WHC (purge). Shear force values for loin samples from pelvic-suspended carcasses were significantly (P = 0.001) lower than those from Achilles tendon-suspended carcasses, and there was a similar trend for inside samples, although this was not significant (P = 0.06). There was no effect of carcass suspension technique for shear force values of the shoulder samples. The trained panel judged loin and inside samples from pelvic-suspended carcasses to be more tender (P <= 0.001) while no effect of carcass suspension technique on tenderness was found in the shoulder samples. Juiciness was not affected by carcass suspension. The present study demonstrated that pelvic suspension improved tenderness in the most valuable cuts from the reindeer carcass (loin and inside).
C1 [Wiklund, E.; Finstad, G.; Aguiar, G.] Univ Alaska, Reindeer Res Program, Sch Nat Resources & Agr Sci, Fairbanks, AK 99775 USA.
[Wiklund, E.] Svenska Samernas Riksforbund Natl Union Swedish S, S-90327 Umea, Sweden.
[Bechtel, P. J.] Univ Alaska, USDA ARS, Subarctic Agr Res Unit, Kodiak, AK 99615 USA.
RP Wiklund, E (reprint author), Univ Alaska, Reindeer Res Program, Sch Nat Resources & Agr Sci, Fairbanks, AK 99775 USA.
EM wiklundia1@gmail.com
NR 19
TC 2
Z9 2
U1 0
U2 7
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1836-0939
J9 ANIM PROD SCI
JI Anim. Prod. Sci.
PY 2012
VL 52
IS 8
BP 731
EP 734
DI 10.1071/AN11269
PG 4
WC Agriculture, Multidisciplinary
SC Agriculture
GA 972MY
UT WOS:000306282400009
ER
PT J
AU Forge, T
Zasada, I
Pinkerton, J
Koch, C
AF Forge, Tom
Zasada, Inga
Pinkerton, Jack
Koch, Carol
TI Host status and damage potential of Paratrichodorus renifer and
Pratylenchus penetrans (Nematoda) to blueberry (Vaccinium spp.)
SO CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE
LA English
DT Article
DE Ericaceae; nematode; plant-parasitic nematode; root disease; root lesion
nematode; stubby root nematode; Vaccinium
ID HIGHBUSH BLUEBERRY; ARKANSAS; OREGON; GROWTH
AB Stubby root nematodes (Paratrichodorus species) and root lesion nematodes (Pratylenchus species) have been found in root zone soil of blueberry plants in most blueberry-growing regions of North America. Relatively little is known, however, of the reproductive potential and damage caused by these nematodes to blueberry. We performed controlled inoculation studies in a greenhouse in order to assess population growth and damage caused by Paratrichodorus renifer and Pratylenchus penetrans on a range of blueberry cultivars, including representatives of Vaccinium corymbosum (four cultivars), V. angustifolium (one cultivar) and V. ashei (one cultivar). All tested blueberry cultivars were considered good hosts to P. renifer (reproduction factor (RF) values > 1.0) except V. ashei `Powderblue' which was considered a poor host (RF = 0.2 and 0.1 for trials 1 and 2, respectively). Paratrichodorus renifer reduced root biomass of susceptible blueberry cultivars; however, this effect was not consistent across trials. Pratylenchus penetrans did not reproduce on any blueberry cultivars under greenhouse conditions. Population growth and damage caused by P. renifer on V. corymbosum x angustifolium `Chippewa' was assessed using field microplots. Paratrichodorus renifer reduced berry yield, canopy volume and top dry weights two years after inoculation by 40, 25 and 25%, respectively. Our results clearly indicate that P. renifer population densities increase on V. corymbosum and V. angustifolium and the nematode is potentially damaging to blueberry.
C1 [Forge, Tom; Koch, Carol] Agr & Agri Food Canada, Pacific Agri Food Res Ctr, Agassiz, BC V0M 1A0, Canada.
[Zasada, Inga; Pinkerton, Jack] USDA ARS, Hort Crops Res Lab, Corvallis, OR 97330 USA.
RP Forge, T (reprint author), Agr & Agri Food Canada, Pacific Agri Food Res Ctr, Agassiz, BC V0M 1A0, Canada.
EM Tom.Forge@agr.gc.ca
FU AAFC's SAGES program
FX The authors wish to thank Shaobing Yu and James Hall for assistance with
microplot establishment, Amy Peetz for assistance with greenhouse
experiments, and AAFC's SAGES program for funding the microplot
experiments.
NR 20
TC 1
Z9 1
U1 3
U2 11
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0706-0661
J9 CAN J PLANT PATHOL
JI Can. J. Plant Pathol.-Rev. Can. Phytopathol.
PY 2012
VL 34
IS 2
BP 277
EP 282
DI 10.1080/07060661.2012.689261
PG 6
WC Plant Sciences
SC Plant Sciences
GA 972ZX
UT WOS:000306321800012
ER
PT J
AU Sakakibara, K
Nakatsubo, F
French, AD
Rosenau, T
AF Sakakibara, Keita
Nakatsubo, Fumiaki
French, Alfred D.
Rosenau, Thomas
TI Chiroptical properties of an alternatingly functionalized cellotriose
bearing two porphyrin groups
SO CHEMICAL COMMUNICATIONS
LA English
DT Article
ID LANGMUIR-BLODGETT-FILMS; CIRCULAR-DICHROISM; CELLULOSE; POLYSACCHARIDES;
C-60; 6-O-ALPHA-(1-NAPHTHYLMETHYL)-2,3-DI-O-PENTYLCELLULOSE;
OLIGOSACCHARIDES; CONFORMATION; COMPLEXATION; DERIVATIVES
AB Right-handedness derived from bisporphyrins attached to a cellotriose backbone at O-6 and O ''-6 positions is revealed for the first time. This cellotriose is proposed as a model of alternatingly functionalized cellulosics, which have promising properties for applications in optoelectronics and molecular receptors owing to the chirality and rigid backbone effects.
C1 [Sakakibara, Keita; Rosenau, Thomas] Univ Nat Resources & Life Sci BOKU, Dept Chem, A-1190 Vienna, Austria.
[Sakakibara, Keita] Kyoto Univ, Inst Chem Res, Kyoto 6110011, Japan.
[Nakatsubo, Fumiaki] Kyoto Univ, Res Inst Sustainable Humanosphere, Kyoto 6110011, Japan.
[French, Alfred D.] USDA, So Reg Res Ctr, New Orleans, LA 70124 USA.
RP Sakakibara, K (reprint author), Univ Nat Resources & Life Sci BOKU, Dept Chem, Muthgasse 18, A-1190 Vienna, Austria.
EM sakakibara.keita.4n@kyoto-u.ac.jp; thomas.rosenau@boku.ac.at
OI Rosenau, Thomas/0000-0002-6636-9260
FU Austrian BMLFUW Ministry (Project "Multifunctional celluloses'')
FX The authors thank Dr C. Obinger and Dr P. Furtmueller (BOKU) for support
for CD measurement and Dr A. Hofinger (BOKU) for support for NMR
measurement. The financial support by the Austrian BMLFUW Ministry
(Project "Multifunctional celluloses'') is gratefully acknowledged. K.S.
acknowledges the Foundation of Yoshida Science and Technologies.
NR 26
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U1 1
U2 25
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
ENGLAND
SN 1359-7345
J9 CHEM COMMUN
JI Chem. Commun.
PY 2012
VL 48
IS 62
BP 7672
EP 7674
DI 10.1039/c2cc30805c
PG 3
WC Chemistry, Multidisciplinary
SC Chemistry
GA 971BH
UT WOS:000306176300002
PM 22498637
ER
PT J
AU Sandells, MJ
Flerchinger, GN
Gurney, RJ
Marks, D
AF Sandells, M. J.
Flerchinger, G. N.
Gurney, R. J.
Marks, D.
TI Simulation of snow and soil water content as a basis for satellite
retrievals
SO HYDROLOGY RESEARCH
LA English
DT Article
DE boundary conditions; physically-based model; remote sensing; snow; soil
moisture
ID ENERGY-BALANCE; GRAIN-SIZE; SHAW MODEL; COVER; CLIMATE; SURFACE; SYSTEM
AB It is not yet possible to determine whether global snow mass has changed over time despite collection of passive microwave data for more than thirty years. Physically-based, but computationally fast snow and soil models have been coupled to form the basis of a data assimilation system for retrievals of snow mass and soil moisture from existing and future satellite observations. The model has been evaluated against observations of snow mass and soil temperature and moisture profiles from Reynolds Creek Experimental Watershed, Idaho. Simulation of snow mass was improved early in the season due to more realistic representation of soil heat flux, but led to an overestimation of snow mass later in the season. Soil temperatures were generally simulated well; freezing of the surface layers was not observed but was simulated, which affected soil water transport. Limited knowledge of the soil lower boundary conditions is acceptable for snow mass and surface soil moisture retrievals, although improvements are required for more accurate simulations of deeper soil moisture at this site. Development of a data assimilation framework to retrieve snow mass and near-surface soil moisture is discussed.
C1 [Sandells, M. J.; Gurney, R. J.] Natl Ctr Earth Observat, Environm Syst Sci Ctr, Reading RG6 6AL, Berks, England.
[Flerchinger, G. N.; Marks, D.] ARS, USDA, NW Watershed Res Ctr, Boise, ID 83712 USA.
RP Sandells, MJ (reprint author), Natl Ctr Earth Observat, Environm Syst Sci Ctr, Harry Pitt Bldg,POB 238, Reading RG6 6AL, Berks, England.
EM m.j.sandells@reading.ac.uk
NR 22
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U1 1
U2 11
PU IWA PUBLISHING
PI LONDON
PA ALLIANCE HOUSE, 12 CAXTON ST, LONDON SW1H0QS, ENGLAND
SN 1998-9563
J9 HYDROL RES
JI Hydrol. Res.
PY 2012
VL 43
IS 5
BP 720
EP 735
DI 10.2166/nh.2012.028
PG 16
WC Water Resources
SC Water Resources
GA 971WW
UT WOS:000306237500015
ER
PT J
AU Nelson, SO
Trabelsi, S
AF Nelson, Stuart O.
Trabelsi, Samir
TI Factors Influencing the Dielectric Properties of Agricultural and Food
Products
SO JOURNAL OF MICROWAVE POWER AND ELECTROMAGNETIC ENERGY
LA English
DT Article
DE Dielectric properties; permittivity; agricultural products; foods;
frequency; moisture content; temperature; density
ID TEMPERATURE-DEPENDENT PERMITTIVITIES; 1.8 GHZ; FRESH FRUITS; FREQUENCY;
SPECTROSCOPY; VEGETABLES; KERNELS; WHEAT; CORN; MHZ
AB Dielectric properties of materials are defined, and the major factors that influence these properties of agricultural and food materials, namely, frequency of the applied radio-frequency or microwave electric fields, and water content, temperature, and density of the materials, are discussed on the basis of fundamental concepts. The dependence of measured dielectric properties on these factors is illustrated graphically and discussed for a number of agricultural and food products, including examples of grain, peanuts, fruit, eggs, fresh chicken meat, whey protein gel, and a macaroni and cheese preparation. General observations are provided on the nature of the variation of the dielectric properties with the major variables.
C1 [Nelson, Stuart O.; Trabelsi, Samir] ARS, USDA, Russell Res Ctr, Athens, GA 30605 USA.
RP Nelson, SO (reprint author), ARS, USDA, Russell Res Ctr, 950 Coll Stn Rd, Athens, GA 30605 USA.
NR 33
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PU INT MICROWAVE POWER INST
PI MECHANICSVILLE
PA PO BOX 1140, MECHANICSVILLE, VA 23111 USA
SN 0832-7823
J9 J MICROWAVE POWER EE
JI J. Microw. Power Electromagn. Energy
PY 2012
VL 46
IS 2
BP 93
EP 107
PG 15
WC Engineering, Chemical; Engineering, Electrical & Electronic; Materials
Science, Multidisciplinary
SC Engineering; Materials Science
GA 971PQ
UT WOS:000306216700006
PM 24427860
ER
PT J
AU Moeller, JR
Moscou, MJ
Bancroft, T
Skadsen, RW
Wise, RP
Whitham, SA
AF Moeller, Jackson R.
Moscou, Matthew J.
Bancroft, Tim
Skadsen, Ronald W.
Wise, Roger P.
Whitham, Steven A.
TI Differential accumulation of host mRNAs on polyribosomes during obligate
pathogen-plant interactions
SO MOLECULAR BIOSYSTEMS
LA English
DT Article
ID BARLEY-POWDERY MILDEW; TURNIP-MOSAIC-VIRUS; UNFOLDED PROTEIN RESPONSE;
F-SP HORDEI; ARABIDOPSIS-THALIANA; GENE-EXPRESSION; DISEASE RESISTANCE;
BASAL DEFENSE; CELL-WALL; INFECTION
AB Plant pathogens elicit dramatic changes in the expression of host genes during both compatible and incompatible interactions. Gene expression profiling studies of plant-pathogen interactions have only considered messenger RNAs (mRNAs) present in total RNA, which contains subpopulations of actively translated mRNAs associated with polyribosomes (polysomes) and non-translated mRNAs that are not associated with polysomes. The goal of this study was to enhance previous gene expression analyses by identifying host mRNAs that become differentially associated with polysomes following pathogen inoculation. Total and polysomal RNA were extracted from barley (Hordeum vulgare) plants at 32 h after inoculation with Blumeria graminis f. sp. hordei, and Arabidopsis thaliana plants at 10 days after inoculation with Turnip mosaic virus. Gene expression profiles were obtained for each pathosystem, which represent diverse plant host-obligate pathogen interactions. Using this approach, host mRNAs were identified that were differentially associated with polysomes in response to pathogen treatment. Approximately 18% and 26% of mRNAs represented by probe sets on the Affymetrix Barley1 and Arabidopsis ATH1 GeneChips, respectively, differentially accumulated in the two populations in one or more combinations of treatment and genotype. Gene ontology analysis of mRNAs sharing the same pattern of accumulation in total and polysomal RNA identified gene sets that contained a significant number of functionally related annotations, suggesting both transcript accumulation and recruitment to polyribosomes are coordinately regulated in these systems.
C1 [Moeller, Jackson R.; Whitham, Steven A.] Iowa State Univ, Interdept Plant Biol, Ames, IA 50011 USA.
[Moeller, Jackson R.; Moscou, Matthew J.; Wise, Roger P.; Whitham, Steven A.] Iowa State Univ, Dept Plant Pathol & Microbiol, Ames, IA 50011 USA.
[Moscou, Matthew J.; Wise, Roger P.] Iowa State Univ, Interdept Bioinformat & Computat Biol, Ames, IA 50011 USA.
[Bancroft, Tim] Iowa State Univ, Dept Stat, Ames, IA 50011 USA.
[Skadsen, Ronald W.] USDA ARS, Cereal Crops Res Unit, Madison, WI 53726 USA.
[Wise, Roger P.] Iowa State Univ, Crop & Insect Genet Genom & Informat Res Unit, USDA ARS, Ames, IA 50011 USA.
RP Whitham, SA (reprint author), Iowa State Univ, Interdept Plant Biol, Ames, IA 50011 USA.
EM swhitham@iastate.edu
RI Moscou, Matthew/D-5266-2011
OI Moscou, Matthew/0000-0003-2098-6818
FU National Science Foundation Plant Genome Research Program [0500461];
USDA-ARS [58-3625-3-0159]; CRIS project [3625-21000-049-00D]; Hatch Act
and State of Iowa Funds
FX We thank J. Bailey-Serres (University of California, Riverside) for seed
of the Col-0 35S:HF-RPL18 transgenic line, A. Mustroph for advice on
RPL18 immunoprecipitation, and J. Peng for microarray hybridization at
the Iowa State University Gene Chip Facility. The authors are grateful
for statistical consultation provided by D. Nettleton, and assistance
with figure construction by G. Fuerst. This work was supported by the
National Science Foundation Plant Genome Research Program grant no.
0500461 to RPW and SAW, USDA-ARS Specific Cooperative Agreement no.
58-3625-3-0159 to SAW, and CRIS project no. 3625-21000-049-00D to RPW.
This article is a joint contribution of The Iowa Agriculture and Home
Economics Experiment Station project no. 3608 and the Crop and Insect
Genetics, Genomics, and Informatics Research Unit, USDA-Agricultural
Research Service, Ames, IA, and was supported, in part, by Hatch Act and
State of Iowa Funds. Mention of trade names or commercial products in
this publication is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the U.S.
Department of Agriculture.
NR 54
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U1 0
U2 12
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
ENGLAND
SN 1742-206X
J9 MOL BIOSYST
JI Mol. Biosyst.
PY 2012
VL 8
IS 8
BP 2153
EP 2165
DI 10.1039/c2mb25014d
PG 13
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 968GK
UT WOS:000305965100014
PM 22660698
ER
PT J
AU Fraedrich, SW
Cram, MM
Handoo, ZA
Zarnoch, SJ
AF Fraedrich, Stephen W.
Cram, Michelle M.
Handoo, Zafar A.
Zarnoch, Stanley J.
TI Influence of Tylenchorhynchus ewingi on growth of loblolly pine
seedlings, and host suitability of legumes and small grains
SO NEMATOLOGY
LA English
DT Article
DE cover crops; forest tree nursery; nematode control; pest management;
stunt nematode
ID PHYTOPARASITIC NEMATODE SURVEYS; PLANT-PARASITIC NEMATODES; ARKANSAS;
FIELDS; REPRODUCTION
AB Tylenchorhynchus ewingi, a stunt nematode, causes severe injury to slash pine seedlings and has been recently associated with stunting and chlorosis of loblolly pine seedlings at some forest tree nurseries in southern USA. Experiments confirmed that loblolly pine is a host for T. ewingi, and that the nematode is capable of causing severe damage to root systems. Initial population densities as low as 60 nematodes (100 cm(3) soil)(-1) were sufficient to damage the root systems of loblolly pine seedlings. Populations of T. ewingi increased on pine from two- to 16-fold, depending on the initial population density. Evaluations of various cover crops used in southern forest tree nurseries indicated that legumes, rye and several varieties of sorghum were excellent hosts for T. ewingi. Other small grains such as ryegrass, oats and wheat were poorer hosts. A cultivar of pearl millet was a non-host for T. ewingi, and a cultivar of brown top millet appeared to be either a very poor host or a non-host. Nurseries that have seedling production losses caused by T. ewingi should consider rotating with non-host cover crops such as pearl millet or leaving fields fallow as part of their pest management programme.
C1 [Fraedrich, Stephen W.] US Forest Serv, So Res Stn, USDA, Athens, GA 30602 USA.
[Handoo, Zafar A.] USDA ARS, Nematol Lab, BARC W, Beltsville, MD 20705 USA.
[Zarnoch, Stanley J.] US Forest Serv, So Res Stn, USDA, Asheville, NC 28804 USA.
RP Fraedrich, SW (reprint author), US Forest Serv, So Res Stn, USDA, Athens, GA 30602 USA.
EM sfraedrich@fs.fed.us
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PU BRILL ACADEMIC PUBLISHERS
PI LEIDEN
PA PLANTIJNSTRAAT 2, P O BOX 9000, 2300 PA LEIDEN, NETHERLANDS
SN 1388-5545
J9 NEMATOLOGY
JI Nematology
PY 2012
VL 14
BP 417
EP 425
DI 10.1163/156854111X603784
PN 4
PG 9
WC Zoology
SC Zoology
GA 971AT
UT WOS:000306174800004
ER
PT J
AU Masler, EP
Nagarkar, A
Edwards, L
Hooks, CRR
AF Masler, Edward P.
Nagarkar, Asmita
Edwards, Lanelle
Hooks, Cerruti R. R.
TI Behaviour of Heterodera glycines and Meloidogyne incognita infective
juveniles exposed to nematode FMRFamide-like peptides in vitro
SO NEMATOLOGY
LA English
DT Article
DE FLPs; movement; neuromuscular; parasite; pepper; plant-parasitic
nematode; soybean
ID NEUROPEPTIDE GENE FAMILIES; CAENORHABDITIS-ELEGANS; LOCOMOTORY BEHAVIOR;
ASCARIS-SUUM; LOCALIZATION
AB The effects of 1 mM solutions of FMRFamide-like peptides (FLPs) on the behaviours of Heterodera glycines and Meloidogyne incognita infective juveniles (J2) were examined in vitro. Seven FLPs, representing products of five flp genes and comprising a variety of amino acid sequences, were tested for their effects on J2 head movement frequency. Distinct differences in species responses were observed. KHEYLRFa and KSAYMRFa caused increased head movement frequencies in each species. In H. glycines KHEYLRFa was 2.9-fold more potent than KSAYMRFa. In M. incognita the potencies were equal. KHEYLRFa and KSAYMRFa each stimulated H. glycines J2 more effectively than M. incognita J2. However, two additional FLPs, AQTFVRFa and SAPYDPNFLRFa, were stimulatory in M. incognita but not in H. glycines. KPNFIRFa, KPNFLRFa and RNSSPLGTMRFa had no effect on either species. Substitution of D-amino acids at any position in KHEYLRFa resulted in decreased stimulation of head movement relative to the native peptide in each species, but all of the D-amino acid KHEYLRFa analogues were stimulatory relative to untreated controls. D-amino acid substitutions in KSAYMRFa eliminated stimulatory activity in M. incognita by all analogues except dKSAYMRFa. In H. glycines, only KSdAYMRFa and KSAYMdRFa were not stimulatory, and KSAYdMRFa stimulated equal to the native peptide. The remaining four analogues each stimulated relative to controls but below the native peptide level. Analysis of the head movement behaviour of large numbers of J2 of each species demonstrated that behaviours are quite stable and responses to FLP treatment are highly predictable.
C1 [Masler, Edward P.] ARS, Nematol Lab, USDA, Beltsville, MD 20705 USA.
[Nagarkar, Asmita; Edwards, Lanelle; Hooks, Cerruti R. R.] Univ Maryland, Dept Entomol, College Pk, MD 20742 USA.
RP Masler, EP (reprint author), ARS, Nematol Lab, USDA, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM edward.masler@ars.usda.gov
NR 22
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PU BRILL ACADEMIC PUBLISHERS
PI LEIDEN
PA PLANTIJNSTRAAT 2, P O BOX 9000, 2300 PA LEIDEN, NETHERLANDS
SN 1388-5545
J9 NEMATOLOGY
JI Nematology
PY 2012
VL 14
BP 605
EP 612
DI 10.1163/156854111X617879
PN 5
PG 8
WC Zoology
SC Zoology
GA 969XK
UT WOS:000306092500009
ER
PT J
AU Schaeffer, TW
Hennen, MJ
Brown, ML
Rosentrater, KA
AF Schaeffer, Travis W.
Hennen, Matthew J.
Brown, Michael L.
Rosentrater, Kurt A.
TI Nutritional Composition and Use of Common Carp Muscle in Yellow Perch
Diets
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID DISTILLERS DRIED GRAINS; CYPRINUS-CARPIO; FISH-MEAL; GROWTH; TILAPIA;
REPLACEMENT; FLAVESCENS; SOLUBLES; REQUIREMENT; AQUACULTURE
AB High market demand for marine fish meals coupled with increasing costs and questionable sustainability of wild stocks have led researchers to investigate a variety of alternative plant and animal protein sources for aquaculture feeds. Our objective was to evaluate the use of common carp Cyprinus carpio, a locally abundant, nonnative fish species, to offset the cost of marine fish meal in fish feed. We completed analyses of common carp whole muscle, formulated diets containing combinations of carp and Gulf menhaden Brevoortia patronus fish meal, and then evaluated test diets in a feeding trial with yellow perch Perca flavescens. Composition (dry matter basis [dmb]) of common carp flesh (crude protein [CP] = 73.4%, crude lipid [CL] = 25.7%) slightly differed from menhaden fish meal (MFM; CP = 71.0%, CL = 11.7%, dmb). Three experimental diets were formulated to include percentage ratios of 50: 0, 25: 25, or 0: 50 of common carp muscle meal (CCMM) to MFM to obtain similar crude protein (29.7 +/- 0.9% [mean +/- SD]), crude lipid (15.0 +/- 3.7%), and digestible energy (14.2 +/- 0.3 kJ/g) levels. Juvenile yellow perch (initial weight = 18.1 +/- 3.3 g) were randomly stocked (n = 7) in twelve 37-L tanks resulting in four replicate tanks per treatment. Fish fed 25% CCMM : 25% MFM had significantly higher weight gain, while fish fed 50% CCMM : 0% MFM had significantly higher food conversion ratios and lower visceral somatic indices. No statistically significant differences were observed for protein efficiency ratios, Fulton condition factors, hepatosomatic indices, or feed intake of fish fed the different diets. These results indicate that CCMM can be used to partially offset the use of MFM in yellow perch diets.
C1 [Schaeffer, Travis W.; Hennen, Matthew J.; Brown, Michael L.] S Dakota State Univ, Dept Nat Resources Management, No Plains Biostress Lab, Brookings, SD 57007 USA.
[Rosentrater, Kurt A.] ARS, USDA, N Cent Agr Res Lab, Brookings, SD 57006 USA.
RP Brown, ML (reprint author), S Dakota State Univ, Dept Nat Resources Management, No Plains Biostress Lab, Box 2140B, Brookings, SD 57007 USA.
EM michael.brown@sdstate.edu
OI Rosentrater, Kurt/0000-0003-0131-7037
FU Agricultural Experiment Station, South Dakota State University,
Brookings, South Dakota; North Central Agricultural Research Laboratory,
U.S. Department of Agriculture, Agricultural Research Service,
Brookings; Department of Natural Resources Management, South Dakota
State University; Department of Agricultural and Biosystems Engineering,
South Dakota State University
FX The authors thank the Agricultural Experiment Station, South Dakota
State University, Brookings, South Dakota, the North Central
Agricultural Research Laboratory, U.S. Department of Agriculture,
Agricultural Research Service, Brookings, and Department of Natural
Resources Management and Department of Agricultural and Biosystems
Engineering, South Dakota State University, for financial support and
use of equipment and facilities. The authors thank Andrew Ahrens,
Christopher Dekker, Seth Lundgren, Daniel Spengler, Andrew Wiering, and
staff from the South Dakota Department of Game, Fish, and Parks for
their help with collecting and processing data and assistance with the
feeding trial. The authors also thankfully acknowledge Sharon Nichols,
Christine Keierleber, and Ferouz Ayadi for their help during the
extrusion of the experimental feeds. This study was performed in
compliance with the South Dakota State University Institutional Animal
Care and Use Committee (07-E016). Mention of trade name, propriety
product, or specific equipment does not constitute a guarantee or
warranty by the U.S. Department of Agriculture and does not imply
approval of a product to the exclusion of others that may be suitable.
NR 50
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PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1522-2055
EI 1548-8454
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 3
BP 297
EP 305
DI 10.1080/15222055.2012.675991
PG 9
WC Fisheries
SC Fisheries
GA 970GL
UT WOS:000306116000003
ER
PT J
AU Chatakondi, NG
Torrans, EL
AF Chatakondi, Nagaraj G.
Torrans, Eugene L.
TI The Effect of Calcium Hardness on Hatching Success of Channel Catfish x
Blue Catfish Hybrid Catfish Eggs
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID WATER HARDNESS; SALMON EGGS; FERTILIZATION; PIMELODIDAE; GROWTH
AB The present study was designed to determine the optimal level of calcium hardness in hatching waters to incubate channel catfish Ictalurus punctatus x blue catfish I. furcatus hybrid catfish eggs. Hatching success of hybrid catfish eggs was higher (P < 0.05) at a calcium hardness (CaCO3) of 75 mg/L in hatching waters than at a calcium hardness of 25 or 50 mg/L; however, further increases in calcium concentration did not improve hatching success. A minimum water hardness of CaCO3 at 75 mg/L is recommended for incubating hybrid catfish eggs.
C1 [Chatakondi, Nagaraj G.; Torrans, Eugene L.] ARS, USDA, Catfish Genet Res Unit, Stoneville, MS 38776 USA.
RP Chatakondi, NG (reprint author), ARS, USDA, Catfish Genet Res Unit, POB 38, Stoneville, MS 38776 USA.
EM nagaraj.chatakondi@ars.usda.gov
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PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 3
BP 306
EP 309
DI 10.1080/15222055.2012.676003
PG 4
WC Fisheries
SC Fisheries
GA 970GL
UT WOS:000306116000004
ER
PT J
AU Farmer, BD
Beck, BH
Straus, DL
AF Farmer, Bradley D.
Beck, Benjamin H.
Straus, David L.
TI Effectiveness of Copper Sulfate and Potassium Permanganate on Channel
Catfish Infected with Flavobacterium columnare
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID ICTALURUS-PUNCTATUS RAFINESQUE; POLYMERASE-CHAIN-REACTION;
FLEXIBACTER-COLUMNARIS; HISTOLOGY; EFFICACY; FISH
AB Copper sulfate (CuSO4) and potassium permanganate (KMnO4) were evaluated for their effectiveness to curtail mortality and decrease bacterial load in fish tissues and water in channel catfish Ictalurus punctatus infected with Flavobacterium columnare, the causative agent of columnaris. Fish (average size, 16.6 g and 13.7 cm) were obtained from a single culture tank undergoing an epizootic of columnaris and were stocked at a density of 30 fish per tank in each of 12 tanks. The study consisted of three treatments (n= 4 replicates per treatment): an untreated control group, a CuSO4-treated group, and a KMnO4-treated group. Treatment rates were 2.1 mg/L CuSO4 and 3.0 mg/L KMnO4 and were applied on three consecutive days at 24-h intervals. Caudal fin, gill, and liver samples were taken from one fish of each replication 24 h after the last treatment for analysis by quantitative real time PCR. A significant improvement in survival was noted among fish treated with CuSO4 (72.7%) compared with the control fish (38.5%) and the KMnO4-treated fish (52.2%). Survival of the KMnO4-treated fish was not significantly different from the control. Quantitative PCR indicated a significant reduction of bacteria in the water after the first and second treatments of both therapeutants; no difference was detected in fish tissues. Histological analysis of gill samples 24 h after the last treatment indicated that CuSO4-treated fish exhibited significantly less gill damage than untreated controls and there was no difference in KMnO4-treated fish. Copper sulfate therapy significantly improved survival, reduced the number of bacteria in the water, and reduced gill pathologies associated with F. columnare infection in channel catfish.
C1 [Farmer, Bradley D.; Beck, Benjamin H.; Straus, David L.] ARS, USDA, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, Stuttgart, AR 72160 USA.
RP Farmer, BD (reprint author), ARS, USDA, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, POB 1050, Stuttgart, AR 72160 USA.
EM bradley.farmer@ars.usda.gov
FU U.S. Department of Agriculture USDA), Agricultural Research Service
[6225-32000-004-00D]
FX The authors thank Matt Barnett and Cindy Ledbetter for their technical
assistance throughout the course of the study. We are grateful to Matt
Griffin, Steven Rawles, and Ben LaFrentz for constructive comments and
review of early manuscripts. This study was funded by the U.S.
Department of Agriculture (USDA), Agricultural Research Service under
Project 6225-32000-004-00D. Mention of trade names or commercial
products in this article is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the
USDA. The USDA is an equal opportunity provider and employer
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PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 3
BP 320
EP 329
DI 10.1080/15222055.2012.676000
PG 10
WC Fisheries
SC Fisheries
GA 970GL
UT WOS:000306116000007
ER
PT J
AU Green, BW
O'Neal, EG
AF Green, Bartholomew W.
O'Neal, E. Gregory
TI A Submersible Magnetic Stirrer for Use in Measuring Photosynthesis in a
Biofloc Technology Production System
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID BIO-FLOCS TECHNOLOGY; AQUACULTURE SYSTEMS; COMMUNITIES; EXCHANGE; PONDS
AB Measuring photosynthesis or primary productivity in biofloc technology production systems is challenging because the biofloc must be maintained in suspension constantly. Photosynthesis can be measured in external incubators designed to keep the biofloc suspended in the biochemical oxygen demand (BOD) bottle, but primary productivity must be measured in the biofloc technology production system culture unit. Therefore, a submersible device is required to keep the biofloc suspended in the BOD bottle. This report details a submersible, air-powered magnetic stirrer that we designed, fabricated from off-the-shelf materials, and tested in biofloc technology production system tanks.
C1 [Green, Bartholomew W.; O'Neal, E. Gregory] ARS, USDA, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, Stuttgart, AR 72160 USA.
RP Green, BW (reprint author), ARS, USDA, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, POB 1050, Stuttgart, AR 72160 USA.
EM bart.green@ars.usda.gov
FU U.S. Department of Agriculture (USDA), Agricultural Research Service
[6225-31630-006-00D]
FX We thank Rebecca Jacobs for taking the photos for Figure 1. This study
was funded by the U.S. Department of Agriculture (USDA), Agricultural
Research Service under project number 6225-31630-006-00D. Mention of
trade names or commercial products in this article is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the USDA. The USDA is an equal
opportunity provider and employer.
NR 14
TC 0
Z9 0
U1 2
U2 5
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 3
BP 347
EP 351
DI 10.1080/15222055.2012.676018
PG 5
WC Fisheries
SC Fisheries
GA 970GL
UT WOS:000306116000010
ER
PT J
AU Schrader, KK
Tucker, CS
AF Schrader, Kevin K.
Tucker, Craig S.
TI Evaluation of Off-Flavor in Pond-Raised Channel Catfish following
Partial Crop Harvest
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID 2-METHYLISOBORNEOL; GEOSMIN; CYANOBACTERIA
AB Ponds used to raise channel catfish Ictalurus punctatus in the southeastern United States often contain more food-sized catfish than processors can accept at one time. Fish remaining after initial harvest are returned to the pond and harvested again as soon as possible based upon processor demands. Some catfish farmers report that catfish crops initially declared "on-flavor" appear to develop off-flavors soon after the first harvest, which postpones harvest of the remaining population and delays subsequent production. We conducted a 9-month study on a commercial catfish farm in northwest Mississippi to determine whether fish systematically develop off-flavors after partial fish harvest and, if so, the type and origin of the flavor. Channel catfish and water samples were obtained from 12 ponds before initial harvest and then at intervals for 2 weeks after harvest. Water and catfish fillet samples were analyzed for geosmin and 2-methylisoborneol (MIB). Phytoplankton were identified and counted microscopically. Catfish fillets were also used in sensory analysis to determine quality and intensity of off-flavor. In most ponds, MIB levels decreased or remained unchanged in pond water after the first seining while geosmin levels remained very low (<10 ng/L) in all ponds. Analysis indicated that mean MIB concentrations in catfish fillets either decreased or were unchanged after the initial harvest. Similar results were found for geosmin concentrations in catfish fillets. There was also no systematic change in fillet flavor quality as determined by sensory analysis. The MIB-producing cyanobacterium Planktothrix perornata was found in only three ponds, and the abundance of P. perornata decreased in two ponds after initial harvest and transiently increased in the third pond. Overall, we found no systematic changes in fish flavor quality after partial fish harvest and no indication that harvest activities changed ecological conditions that would cause an increase in odor-producing cyanobacteria.
C1 [Schrader, Kevin K.] ARS, USDA, Nat Prod Utilizat Res Unit, Natl Ctr Nat Prod Res, University, MS 38677 USA.
[Tucker, Craig S.] Mississippi State Univ, Thad Cochran Natl Warmwater Aquaculture Ctr, Stoneville, MS 38677 USA.
RP Schrader, KK (reprint author), ARS, USDA, Nat Prod Utilizat Res Unit, Natl Ctr Nat Prod Res, POB 8048, University, MS 38677 USA.
EM kevin.schrader@ars.usda.gov
NR 19
TC 1
Z9 1
U1 3
U2 15
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 3
BP 385
EP 394
DI 10.1080/15222055.2012.676012
PG 10
WC Fisheries
SC Fisheries
GA 970GL
UT WOS:000306116000015
ER
PT J
AU dos Santos, NZ
Prior, SA
Gabardo, J
Valaski, JC
Motta, ACV
Neto, AF
AF dos Santos, Nicolas Z.
Prior, Stephen A.
Gabardo, Juarez
Valaski, Julio C.
Motta, Antonio C. V.
Ferreira Neto, Antonio
TI INFLUENCE OF CORN (ZEA MAYS L.) CULTIVAR DEVELOPMENT ON RESIDUE
PRODUCTION
SO JOURNAL OF PLANT NUTRITION
LA English
DT Article
DE Zea mays L.; corn cultivars; C and N concentration; residue quality
ID SOIL CARBON SEQUESTRATION; ELEVATED ATMOSPHERIC CO2; ORGANIC-CARBON;
NITROGEN-FERTILIZATION; SOUTHERN BRAZIL; LIGNIN CONTENT; CROP-ROTATION;
MAIZE; DECOMPOSITION; TILLAGE
AB The amount and composition of crop residues added to soil in agroecosystems can influence decomposition processes and soil organic matter levels. This study aimed to evaluate residues (quantity and quality) of different corn cultivars commonly used in Brazilian cropping systems. The experiment was conducted for two seasons (2005/2006 and 2006/2007) in Rolandia, Parana State, Brazil. Ten corn cultivars that represent five degrees of breeding development (i.e., landrace, commercial variety, double cross, triple cross, and single cross hybrids) were evaluated. At harvest, carbon (C) and nitrogen (N) of non-yield residue and grain were determined. Except for grain C, other measures (grain N concentration, residue C and N concentration, and C: N ratio) varied among cultivars. In general, the hybrids had higher residue C and lower residue N concentrations than the landraces and commercial varieties. Findings suggest that breeding selection may have altered residue production and composition, which may influence soil C dynamics.
C1 [Motta, Antonio C. V.] Univ Fed Parana, Dept Solos & Engn Agr, Setor Ciencias Agr, BR-80035050 Curitiba, Parana, Brazil.
[dos Santos, Nicolas Z.; Ferreira Neto, Antonio] Monsanto Brasil Ltda, Dept Technol Dev, Sao Paulo, Brazil.
[Prior, Stephen A.] ARS, USDA, Natl Soil Dynam Lab, Auburn, AL USA.
[Gabardo, Juarez; Valaski, Julio C.] Univ Fed Parana, Setor Ciencias Biol, Dept Genet, BR-80035050 Curitiba, Parana, Brazil.
RP Motta, ACV (reprint author), Univ Fed Parana, Dept Solos & Engn Agr, Setor Ciencias Agr, 1540 Rua Funcionarios, BR-80035050 Curitiba, Parana, Brazil.
EM mottaacv@ufpr.br
OI Zendonadi dos Santos, Nicolas/0000-0002-3365-6060
FU Monsanto do Brasil Ltda.
FX The authors thank Marcus C. Brites and Luciana Verardino for field
technical assistance; Felipe S. Fiorentin and Gabriel M. Ferreira for
field data collection; Barry Dorman of the USDA-ARS National Soil
Dynamics Laboratory for laboratory analysis; and Monsanto do Brasil
Ltda. for supporting this research.
NR 60
TC 1
Z9 1
U1 0
U2 6
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0190-4167
J9 J PLANT NUTR
JI J. Plant Nutr.
PY 2012
VL 35
IS 5
BP 750
EP 769
DI 10.1080/01904167.2012.653078
PG 20
WC Plant Sciences
SC Plant Sciences
GA 946AC
UT WOS:000304318800008
ER
PT J
AU Guerra, B
Steenwerth, K
AF Guerra, Bibiana
Steenwerth, Kerri
TI Influence of Floor Management Technique on Grapevine Growth, Disease
Pressure, and Juice and Wine Composition: A Review
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Review
DE cover crop; mulch; weed control; winegrape; cultivation; vineyard
ID COVER CROP MANAGEMENT; VINIFERA CV MERLOT; SAN-JOAQUIN VALLEY;
WEED-CONTROL; SOIL-MANAGEMENT; RIVER VALLEY; PINOT-NOIR; MEDITERRANEAN
VINEYARD; GLYPHOSATE-RESISTANT; FRUIT COMPOSITION
AB Vineyard floor management has multiple goals that encompass improving weed management and soil conservation, reducing soil resource availability to control vine vigor, and influencing desirable aspects in wine quality. This review addresses the effects of cultivation, weed control, cover crops, and mulch on vine growth and balance, disease pressure, yield, and juice and wine quality in many growing regions (Australia, New Zealand, South Africa, Europe, and the western United States); offers recommendations for practical use; and highlights research needs. In the last decade, more literature has been published on mulching and cover cropping than on cultivation and herbicide use, suggesting stronger interest in cover cropping and mulching practices for vineyards. Cover crops have the potential to improve soil and vine health, can be adapted to many climates and soils, and may influence vine vigor by adjusting parameters such as the length of their growth period, coverage of the vineyard floor, and aggressiveness. Cover crops increased juice soluble solids, anthocyanins, and other phenolic components and decreased titratable acidity and pH. They were associated with red wines judged superior to those issued from non-cover-cropped vines. Use of organic mulches resulted in improved vine balance, soil water content, and friability, increased yields, and reduced pathogen and pest pressure. Plastic and fabric mulches remain impractical due to high installation cost. Application of newer techniques such as flame weeding or soil steaming is limited due to difficulty in targeting the appropriate stage of weed growth and limited susceptibility of some weed species to these techniques. Research needs include development of multiyear, multidisciplinary studies that use a mechanistic approach to link management practices to soil processes, grapevine responses, grape and wine composition, and sensory characteristics.
C1 [Steenwerth, Kerri] USDA ARS, Crops Pathol & Genet Res Unit, Davis, CA 95616 USA.
[Guerra, Bibiana] Univ Calif Davis, Dept Viticulture & Enol, Davis, CA 95616 USA.
RP Steenwerth, K (reprint author), USDA ARS, Crops Pathol & Genet Res Unit, Davis, CA 95616 USA.
EM kerri.steenwerth@ars.usda.gov
FU American Vineyard Foundation; California Competitive Grant Program for
Research in Viticulture and Enology; Viticulture Consortium West
FX This literature review was funded by a grant from the American Vineyard
Foundation, the California Competitive Grant Program for Research in
Viticulture and Enology, and the Viticulture Consortium West.
NR 136
TC 33
Z9 36
U1 10
U2 89
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 2
BP 149
EP 164
DI 10.5344/ajev.2011.10001
PG 16
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 967SV
UT WOS:000305929000001
ER
PT J
AU Schreiner, RP
Zasada, IA
Pinkerton, JN
AF Schreiner, R. Paul
Zasada, Inga A.
Pinkerton, John N.
TI Consequences of Mesocriconema xenoplax Parasitism on Pinot noir
Grapevines Grafted on Rootstocks of Varying Susceptibility
SO AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
LA English
DT Article
DE arbuscular mycorrhizal fungi; ring nematode; root growth; soil
respiration; Vitis vinifera
ID ARBUSCULAR MYCORRHIZAL FUNGI; NEMATODE CRICONEMELLA-XENOPLAX;
VITIS-VINIFERA; SOIL RESPIRATION; OREGON VINEYARDS; ROOT; COLONIZATION;
POTASSIUM; GROWTH; PHOSPHORUS
AB Pinot noir grapevines grafted to five rootstocks (Vitis vinifera) and a self-rooted control known to vary in resistance to ring nematode (Mesocriconema xenoplax) were studied over four years to evaluate durability of resistance to ring nematode and to better understand how ring nematode parasitism affects below- and aboveground vine growth and physiology. Ring nematode populations in infested microplots of all three susceptible vines (self-rooted, 3309C, 1103P) increased rapidly during the second year and remained high throughout the study, while nematodes increased in two of the previously resistant rootstocks (110R, 101-14) during the third year. Only 420A remained resistant through the entire 4-year period. The impact of ring nematode parasitism on vines was most apparent in the susceptible rootstocks and self-rooted vines with reductions in fine root growth and colonization by arbuscular mycorrhizal fungi (AMF) occurring as early as the second year. Reductions in both fine root production and AMF colonization due to ring nematode were greater in subsequent years in the susceptible vines. The frequency of fine roots containing vesicles of AMF was reduced in all five rootstocks that supported a population increase of ring nematode (only 420A was unaffected). Ring nematode did not alter aboveground vine performance until the third or fourth growing season, when shoot lengths and pruning weights were reduced in the three susceptible vines. Ring nematode did not alter shoot growth in any of the three resistant rootstocks, nor did it affect leaf gas exchange or leaf water potential in any vines in any year. However, by year four ring nematode reduced fruit yield as a main effect across all rootstock treatments.
C1 [Schreiner, R. Paul; Zasada, Inga A.; Pinkerton, John N.] USDA ARS, Hort Crops Res Lab, Corvallis, OR 97330 USA.
RP Schreiner, RP (reprint author), USDA ARS, Hort Crops Res Lab, 3420 NW Orchard Ave, Corvallis, OR 97330 USA.
EM Paul.Schreiner@ars.usda.gov
FU Northwest Center for Small Fruits Research
FX This project was funded in part by the Northwest Center for Small Fruits
Research.
NR 44
TC 3
Z9 3
U1 1
U2 7
PU AMER SOC ENOLOGY VITICULTURE
PI DAVIS
PA PO BOX 1855, DAVIS, CA 95617-1855 USA
SN 0002-9254
J9 AM J ENOL VITICULT
JI Am. J. Enol. Vitic.
PY 2012
VL 63
IS 2
BP 251
EP 261
DI 10.5344/ajev.2012.11104
PG 11
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Horticulture
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Agriculture
GA 967SV
UT WOS:000305929000011
ER
PT J
AU Buker, P
Morrissey, T
Briolat, A
Falk, R
Simpson, D
Tuovinen, JP
Alonso, R
Barth, S
Baumgarten, M
Grulke, N
Karlsson, PE
King, J
Lagergren, F
Matyssek, R
Nunn, A
Ogaya, R
Penuelas, J
Rhea, L
Schaub, M
Uddling, J
Werner, W
Emberson, LD
AF Bueker, P.
Morrissey, T.
Briolat, A.
Falk, R.
Simpson, D.
Tuovinen, J. -P.
Alonso, R.
Barth, S.
Baumgarten, M.
Grulke, N.
Karlsson, P. E.
King, J.
Lagergren, F.
Matyssek, R.
Nunn, A.
Ogaya, R.
Penuelas, J.
Rhea, L.
Schaub, M.
Uddling, J.
Werner, W.
Emberson, L. D.
TI DO3SE modelling of soil moisture to determine ozone flux to forest trees
SO ATMOSPHERIC CHEMISTRY AND PHYSICS
LA English
DT Article
ID BEECH FAGUS-SYLVATICA; PICEA-ABIES L; LEAF GAS-EXCHANGE;
PLANT-ATMOSPHERE INTERACTION; SOUTHERN APPALACHIAN FOREST; ASPEN-BIRCH
FORESTS; FREE-AIR FUMIGATION; HOLM OAK FOREST; QUERCUS-ILEX L; STOMATAL
CONDUCTANCE
AB The DO3SE (Deposition of O-3 for Stomatal Exchange) model is an established tool for estimating ozone (O-3) deposition, stomatal flux and impacts to a variety of vegetation types across Europe. It has been embedded within the EMEP (European Monitoring and Evaluation Programme) photochemical model to provide a policy tool capable of relating the flux-based risk of vegetation damage to O-3 precursor emission scenarios for use in policy formulation. A key limitation of regional flux-based risk assessments has been the assumption that soil water deficits are not limiting O-3 flux due to the unavailability of evaluated methods for modelling soil water deficits and their influence on stomatal conductance (g(sto)), and subsequent O-3 flux.
This paper describes the development and evaluation of a method to estimate soil moisture status and its influence on g(sto) for a variety of forest tree species. This DO3SE soil moisture module uses the Penman-Monteith energy balance method to drive water cycling through the soil-plant-atmosphere system and empirical data describing g(sto) relationships with pre-dawn leaf water status to estimate the biological control of transpiration. We trial four different methods to estimate this biological control of the transpiration stream, which vary from simple methods that relate soil water content or potential directly to g(sto), to more complex methods that incorporate hydraulic resistance and plant capacitance that control water flow through the plant system.
These methods are evaluated against field data describing a variety of soil water variables, g(sto) and transpiration data for Norway spruce (Picea abies), Scots pine (Pinus sylvestris), birch (Betula pendula), aspen (Populus tremuloides), beech (Fagus sylvatica) and holm oak (Quercus ilex) collected from ten sites across Europe and North America. Modelled estimates of these variables show consistency with observed data when applying the simple empirical methods, with the timing and magnitude of soil drying events being captured well across all sites and reductions in transpiration with the onset of drought being predicted with reasonable accuracy. The more complex methods, which incorporate hydraulic resistance and plant capacitance, perform less well, with predicted drying cycles consistently underestimating the rate and magnitude of water loss from the soil.
A sensitivity analysis showed that model performance was strongly dependent upon the local parameterisation of key model drivers such as the maximum g(sto), soil texture, root depth and leaf area index. The results suggest that the simple modelling methods that relate g(sto) directly to soil water content and potential provide adequate estimates of soil moisture and influence on g(sto) such that they are suitable to be used to assess the potential risk posed by O-3 to forest trees across Europe.
C1 [Bueker, P.; Morrissey, T.; Briolat, A.; Falk, R.; Emberson, L. D.] Univ York, Dept Environm, Stockholm Environm Inst York, York YO10 5DD, N Yorkshire, England.
[Simpson, D.] Norwegian Meteorol Inst, EMEP MSC W, Oslo, Norway.
[Simpson, D.] Chalmers, Dept Earth & Space Sci, S-41296 Gothenburg, Sweden.
[Tuovinen, J. -P.] Finnish Meteorol Inst, FIN-00101 Helsinki, Finland.
[Alonso, R.] CIEMAT, E-28040 Madrid, Spain.
[Barth, S.; Uddling, J.] Univ Gothenburg, Dept Plant & Environm Sci, Gothenburg, Sweden.
[Baumgarten, M.; Matyssek, R.; Nunn, A.] Tech Univ Munich, Life Sci Ctr Weihenstephan, Dept Ecol & Ecosyst Management, Freising Weihenstephan, Germany.
[Grulke, N.] US Forest Serv, Western Wildlands Environm Threats Assessment Ctr, USDA, Pacific NW Res Stn, Prineville, OR USA.
[Karlsson, P. E.] Swedish Environm Res Inst, IVL, S-40258 Gothenburg, Sweden.
[King, J.; Rhea, L.] N Carolina State Univ, Dept Forestry & Environm Resources, Raleigh, NC 27695 USA.
[King, J.] Univ Antwerp, Dept Biol, Antwerp, Belgium.
[Lagergren, F.] Lund Univ, Dept Phys Geog, Lund, Sweden.
[Ogaya, R.; Penuelas, J.] Univ Autonoma Barcelona, CREAF Ctr Ecol Res & Forestry Applicat, Global Ecol Unit CREAF CEAB CSIC, E-08193 Barcelona, Spain.
[Schaub, M.] Swiss Fed Res Inst WSL, Birmensdorf, Switzerland.
[Werner, W.] Univ Trier, Dept Geobot, Trier, Germany.
RP Buker, P (reprint author), Univ York, Dept Environm, Stockholm Environm Inst York, York YO10 5DD, N Yorkshire, England.
EM patrick.bueker@sei-international.org
RI Simpson, David/A-3313-2009; Penuelas, Josep/D-9704-2011; Alonso,
Rocio/G-1383-2016; Schaub, Marcus/E-4874-2012
OI Simpson, David/0000-0001-9538-3208; Penuelas, Josep/0000-0002-7215-0150;
Alonso, Rocio/0000-0003-3732-9347; Schaub, Marcus/0000-0002-0158-8892
FU UK Department of Food and Rural Affairs (Defra) [AQ 601]; EU
Nitro-Europe project; EMEP under UNECE; Spanish project Consolider
Montes [CSD2008-00040, CGL2009-13188-C03-02]; Spanish project
CAM-Agrisost
FX We acknowledge the UK Department of Food and Rural Affairs (Defra) under
contract AQ 601 who provided support for this research, as well as
funding from the EU Nitro-Europe project (www.nitroeurope.eu) and EMEP
under UNECE. We also acknowledge the data contribution by Burkhard
Beudert (National Park Bayerischer Wald), Stephan Raspe (Bayerische
Landesanstalt fur Wald und Forstwirtschaft), Joachim Block and
Hans-Werner Schrock (Forschungsanstalt fur Waldokologie und
Forstwirtschaft, Trippstadt), the insightful contributions to this
manuscript provided by Roman Zweifel and Dolores Asensio, and Freya
Forrest for help in performing some of the DO3SE modelling.
R. Alonso would like to thank the Spanish projects Consolider Montes
CSD2008-00040, CGL2009-13188-C03-02 and CAM-Agrisost for their financial
support, which allowed contributions to this research.
NR 149
TC 20
Z9 20
U1 1
U2 55
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1680-7316
J9 ATMOS CHEM PHYS
JI Atmos. Chem. Phys.
PY 2012
VL 12
IS 12
BP 5537
EP 5562
DI 10.5194/acp-12-5537-2012
PG 26
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 966KG
UT WOS:000305835900015
ER
PT J
AU Helama, S
Devall, MS
AF Helama, Samuli
Devall, Margaret S.
TI Tree-ring science under the midnight sun: Papers from the 8th
International Conference on Dendrochronology-WorldDendro 2010
Introduction
SO DENDROCHRONOLOGIA
LA English
DT Editorial Material
C1 [Helama, Samuli] Univ Lapland, Arctic Ctr, Rovaniemi, Finland.
[Devall, Margaret S.] US Forest Serv, Ctr Bottomland Hardwoods Res, Stoneville, MS 38776 USA.
RP Helama, S (reprint author), Univ Lapland, Arctic Ctr, Rovaniemi, Finland.
EM samuli.helama@ulapland.fi; mdevall@fs.fed.us
NR 0
TC 0
Z9 0
U1 0
U2 12
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1125-7865
J9 DENDROCHRONOLOGIA
JI Dendrochronologia
PY 2012
VL 30
IS 2
SI SI
BP 67
EP 68
DI 10.1016/j.dendro.2011.12.001
PG 2
WC Plant Sciences; Forestry; Geography, Physical
SC Plant Sciences; Forestry; Physical Geography
GA 966XT
UT WOS:000305871400001
ER
PT J
AU Bengston, DN
Kubik, GH
Bishop, PC
AF Bengston, David N.
Kubik, George H.
Bishop, Peter C.
TI Strengthening Environmental Foresight: Potential Contributions of
Futures Research
SO ECOLOGY AND SOCIETY
LA English
DT Article
DE environmental futures; futures research; scenarios; strategic foresight
ID ADAPTIVE COMANAGEMENT; ECOSYSTEM SERVICES; GLOBAL SCENARIOS; VISIONS;
ECOLOGY; DELPHI; POLICY; LONG
AB The need for environmental foresight has increased in recent decades as the pace of change has accelerated and the frequency of surprise has increased. Successfully dealing with the growing impacts of change on social-ecological systems depends on our ability to anticipate change. But traditional scientific tools are blunt instruments for studying a future that does not exist. We propose that futures research, a transdisciplinary field of inquiry that has been developing for more than 50 years, offers an underused but fruitful set of approaches to address this important challenge. A few futures research methods-notably several forms of scenario analysis-have been applied to environmental issues and problems in recent years. But futurists have developed an array of other useful methods for exploring possible, plausible, and preferable futures, important insights into the nature of change, and perspectives for thinking creatively and deeply about the future. We present an overview of futures research and its potential to enrich environmental planning and policy by offering a cross-fertilization of new ideas and approaches, providing a more complete view of emerging environmental problems, and facilitating the development of strategies to increase adaptive capacity and deal more effectively with surprises.
C1 [Bengston, David N.] US Forest Serv, USDA, No Res Stn, Washington, DC 20250 USA.
[Kubik, George H.] Univ Minnesota, Minneapolis, MN 55455 USA.
[Bishop, Peter C.] Univ Houston, Dept Futures Studies, Houston, TX 77004 USA.
RP Bengston, DN (reprint author), US Forest Serv, USDA, No Res Stn, Washington, DC 20250 USA.
NR 103
TC 7
Z9 7
U1 2
U2 25
PU RESILIENCE ALLIANCE
PI WOLFVILLE
PA ACADIA UNIV, BIOLOGY DEPT, WOLFVILLE, NS B0P 1X0, CANADA
SN 1708-3087
J9 ECOL SOC
JI Ecol. Soc.
PY 2012
VL 17
IS 2
AR 10
DI 10.5751/ES-04794-170210
PG 12
WC Ecology; Environmental Studies
SC Environmental Sciences & Ecology
GA 969PI
UT WOS:000306067400022
ER
PT J
AU Davis, CG
Dong, DS
Blayney, D
Yen, ST
Stillman, R
AF Davis, Christopher G.
Dong, Diansheng
Blayney, Donald
Yen, Steven T.
Stillman, Richard
TI U.S. Fluid Milk Demand: A Disaggregated Approach
SO INTERNATIONAL FOOD AND AGRIBUSINESS MANAGEMENT REVIEW
LA English
DT Article
DE censored demand; fluid milk; Nielsen Homescan
ID CONSUMER DEMAND; NONNEGATIVITY CONSTRAINTS; PANEL-DATA; SYSTEMS; CHEESE;
EXPENDITURES; REGRESSION; EQUATIONS; QUALITY; MODELS
AB In this study, we examine retail fluid milk data from Nielsen 2007 Homescan. The objective of this study is to determine the impact of demographic variables, retail prices and total milk expenditure on flavored and non-flavored milk purchases. A censored AIDS model is used in estimate the demand for fluid milk. Results reveal that demographic variables have statistically significant impacts on fluid milk purchases, and own-price elasticities are unity or elastic for almost all fluid milk categories. All expenditure elasticities are unity or greater except whole milk and 1% milk.
C1 [Davis, Christopher G.; Blayney, Donald; Stillman, Richard] USDA ARS, Markets & Trade Econ Div, Econ Res Serv, Washington, DC 20024 USA.
[Dong, Diansheng] USDA ARS, Food & Econ Div, Econ Res Serv, Washington, DC 20024 USA.
[Yen, Steven T.] Univ Tennessee, Dept Agr Econ, Knoxville, TN 37996 USA.
RP Davis, CG (reprint author), USDA ARS, Markets & Trade Econ Div, Econ Res Serv, 335 E St SW, Washington, DC 20024 USA.
EM chrisdavis@ers.usda.gov; ddong@ers.usda.gov; dblayney@ers.usda.gov;
syen@utk.edu; stillman@ers.usda.gov
NR 34
TC 4
Z9 4
U1 1
U2 3
PU INT FOOD & AGRIBUSINESS MANAGEMENT REVIEW
PI COLLEGE STATION
PA 333 BLOCKER BUILDING, 2124 TAMU, COLLEGE STATION, TX 77843-2124 USA
SN 1559-2448
J9 INT FOOD AGRIBUS MAN
JI Int. Food Agribus. Manag. Rev.
PY 2012
VL 15
IS 1
BP 25
EP 50
PG 26
WC Agricultural Economics & Policy
SC Agriculture
GA 967VI
UT WOS:000305935500003
ER
PT J
AU Teixeira, EW
Chen, YP
Message, D
Boncristiani, HF
Pettis, JS
Evans, JD
AF Teixeira, Erica W.
Chen, Yan-Ping
Message, Dejair
Boncristiani, Humberto F.
Pettis, Jeff S.
Evans, Jay D.
TI Israeli acute paralysis virus in Africanized honey bees in southeastern
Brazilian Apiaries
SO JOURNAL OF APICULTURAL RESEARCH
LA English
DT Editorial Material
DE Africanized honey bees; viruses; IAPV; colony collapse disorder
ID COLONY COLLAPSE DISORDER; VARROA-DESTRUCTOR MITES; APIS-MELLIFERA;
JACOBSONI; INFESTATION; RESISTANCE
C1 [Teixeira, Erica W.] PRDTA VP Agencia Paulista Tecnol Agronegocios SAA, Sao Paulo, Brazil.
[Chen, Yan-Ping; Pettis, Jeff S.; Evans, Jay D.] ARS, USDA, Bee Res Lab, Beltsville, MD USA.
[Message, Dejair] Univ Fed Vicosa, Dept Biol Anim, Vicosa, MG, Brazil.
[Boncristiani, Humberto F.] Univ N Carolina, Dept Biol, Greensboro, NC 27403 USA.
RP Teixeira, EW (reprint author), PRDTA VP Agencia Paulista Tecnol Agronegocios SAA, Sao Paulo, Brazil.
EM erica@apta.sp.gov.br
RI Evans, Jay/C-8408-2012
OI Evans, Jay/0000-0002-0036-4651
NR 15
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U1 0
U2 13
PU INT BEE RESEARCH ASSOC
PI CARDIFF
PA 16 NORTH RD, CARDIFF CF10 3DY, WALES
SN 0021-8839
J9 J APICULT RES
JI J. Apic. Res.
PY 2012
VL 51
IS 3
BP 282
EP 284
DI 10.3896/IBRA.1.51.3.11
PG 3
WC Entomology
SC Entomology
GA 969QJ
UT WOS:000306070300011
ER
PT J
AU Danka, RG
Harris, JW
Villalobos, E
Glenn, T
AF Danka, Robert G.
Harris, Jeffrey W.
Villalobos, Ethel
Glenn, Thomas
TI Varroa destructor resistance of honey bees in Hawaii, USA, with
different genetic proportions of Varroa Sensitive Hygiene (VSH)
SO JOURNAL OF APICULTURAL RESEARCH
LA English
DT Editorial Material
DE Apis mellifera; Varroa destructor; honey bees; genetic resistance;
integrated pest management; bee breeding
ID HYMENOPTERA; APIDAE
C1 [Danka, Robert G.; Harris, Jeffrey W.] ARS, USDA, Honey Bee Breeding Genet & Physiol Lab, Baton Rouge, LA 70820 USA.
[Villalobos, Ethel] Univ Hawaii Manoa, Dept Plant & Environm Protect Sci, Honolulu, HI 96822 USA.
[Glenn, Thomas] Glenn Apiaries, Fallbrook, CA 92088 USA.
RP Danka, RG (reprint author), ARS, USDA, Honey Bee Breeding Genet & Physiol Lab, 1157 Ben Hur Rd, Baton Rouge, LA 70820 USA.
EM bob.danka@ars.usda.gov
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PU INT BEE RESEARCH ASSOC
PI CARDIFF
PA 16 NORTH RD, CARDIFF CF10 3DY, WALES
SN 0021-8839
J9 J APICULT RES
JI J. Apic. Res.
PY 2012
VL 51
IS 3
BP 288
EP 290
DI 10.3896/IBRA.1.51.3.13
PG 3
WC Entomology
SC Entomology
GA 969QJ
UT WOS:000306070300013
ER
PT S
AU Liu, YL
Thibodeaux, D
Gamble, G
Bauer, P
VanDerveer, D
AF Liu, Yongliang
Thibodeaux, Devron
Gamble, Gary
Bauer, Philip
VanDerveer, Don
BE Druy, MA
Crocombe, RA
TI Simple XRD algorithm for direct determination of cotton crystallinity
SO NEXT-GENERATION SPECTROSCOPIC TECHNOLOGIES V
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Next-Generation Spectroscopic Technologies V
CY APR 23-24, 2012
CL Baltimore, MD
SP SPIE
DE XRD; FT-IR; cellulose; cotton fiber; crystallinity
ID SPECTROSCOPY; FIBERS; STRENGTH
AB Traditionally, XRD had been used to study the crystalline structure of cotton celluloses. Despite considerable efforts in developing the curve-fitting protocol to evaluate the crystallinity index (CI), in its present state, XRD measurement can only provide a qualitative or semi-quantitative assessment of the amounts of crystalline and amorphous cellulosic components in a sample. The greatest barrier to establish quantitative XRD is the lack of appropriate cellulose standards needed to calibrate the measurements. In practice, samples with known CIs are very difficult to be prepared or determined. As an approach, we might assign the samples with reported CIs from FT-IR procedure, in which the three-band ratios were first calculated and then were converted into CIs within a large and diversified pool of cotton fibers. This study reports the development of simple XRD algorithm, over time-consuming and subjective curve-fitting process, for direct determination of cotton cellulose CI by correlating XRD with the FT-IR CI references.
C1 [Liu, Yongliang] ARS, USDA, SRRC, Cotton Struct & Qual Res Unit, New Orleans, LA 70124 USA.
RP Liu, YL (reprint author), ARS, USDA, SRRC, Cotton Struct & Qual Res Unit, New Orleans, LA 70124 USA.
EM yongliang.liu@ars.usda.gov
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PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9052-0
J9 PROC SPIE
PY 2012
VL 8374
AR 83740A
DI 10.1117/12.918628
PG 7
WC Optics; Physics, Applied
SC Optics; Physics
GA BAW56
UT WOS:000305752100010
ER
PT J
AU O'Seaghdha, CM
Hwang, SJ
Holden, R
Booth, SL
Fox, CS
AF O'Seaghdha, Conall M.
Hwang, Shih-Jen
Holden, Rachel
Booth, Sarah L.
Fox, Caroline S.
TI Phylloquinone and Vitamin D Status: Associations with Incident Chronic
Kidney Disease in the Framingham Offspring Cohort
SO AMERICAN JOURNAL OF NEPHROLOGY
LA English
DT Article
DE Chronic kidney disease; Vitamin K; Vitamin D
ID CORONARY-HEART-DISEASE; STAGE RENAL-DISEASE; GLOMERULAR-FILTRATION-RATE;
K EPOXIDE REDUCTASE; VASCULAR CALCIFICATION; D ANALOG; ARTERY
CALCIFICATION; BIOCHEMICAL MEASURES; RECEPTOR ANTAGONIST; SERUM
CREATININE
AB Background: Cardiovascular risk factors are associated with the development of chronic kidney disease (CKD), and CKD and vascular disease are etiologically linked. Evidence suggests deficiencies of vitamins D and K may adversely affect the cardiovascular system, but data from longitudinal studies are lacking. We hypothesized that deficiencies of vitamins D and K may be associated with incident CKD and/or incident albuminuria amongst members of the general population. Methods: We analyzed 1,442 Framingham Heart Study participants (mean age 58 years; 50.5% women), free of CKD (eGFR <60 ml/min/1.73 m(2)), with a mean follow-up of 7.8 years in 2005-2008. Incident albuminuria was defined using sex-specific cut-offs of urine albumin-to-creatinine ratio (>= 17 mg/g men and >= 25 mg/g women). Baseline log plasma phylloquinone (vitamin K-1) and 25(OH) D levels, analyzed as continuous variables and by quartile, were related to risk of incident CKD (n = 108) and incident albuminuria (n = 106) using logistic regression models adjusted for standard risk factors. Results: Participants in the highest phylloquinone quartile (>= 1.78 nmol/l) had an increased risk of CKD (multivariable-adjusted OR Q(4) vs. Q(1) 2.39; p = 0.006) and albuminuria at follow-up (multivariable-adjusted OR Q(4) vs. Q(1) 1.95; p = 0.05), whereas no association was observed with continuous phylloquinone levels for either endpoint. Deficiency of 25(OH) D was not associated with incident CKD or albuminuria in either analysis. Conclusions: Contrary to our hypothesis, higher plasma phylloquinone levels are associated with an increased risk of incident CKD. Whether plasma phylloquinone is a marker for another unmeasured risk factor requires further study. External validation is necessary given the unexpected nature of these results. Copyright (C) 2012 S. Karger AG, Basel
C1 [O'Seaghdha, Conall M.; Hwang, Shih-Jen; Fox, Caroline S.] NHLBI, Framingham Heart Study, Framingham, MA 01702 USA.
[O'Seaghdha, Conall M.; Hwang, Shih-Jen; Fox, Caroline S.] Ctr Populat Studies, Framingham, MA USA.
[O'Seaghdha, Conall M.] Brigham & Womens Hosp, Div Renal, Boston, MA 02115 USA.
[Fox, Caroline S.] Brigham & Womens Hosp, Div Endocrinol, Boston, MA 02115 USA.
Harvard Univ, Sch Med, Boston, MA USA.
[Booth, Sarah L.] Tufts Univ, Human Nutr Res Ctr Aging, Jean Mayer US Dept Agr, Boston, MA 02111 USA.
[Holden, Rachel] Queens Univ, Div Nephrol, Kingston, ON, Canada.
RP Fox, CS (reprint author), NHLBI, Framingham Heart Study, 73 Mt Wayte Ave,Suite 2, Framingham, MA 01702 USA.
EM foxca@nhlbi.nih.gov
FU US Department of Agriculture [58-1950-4-401]; National Institute of
Health [AG14759]; National Heart, Lung, and Blood Institute
[N01-HC-25195]
FX This material is based upon work supported by the US Department of
Agriculture, under agreement No. 58-1950-4-401, the National Institute
of Health (AG14759). The Framingham Heart Study is supported by the
National Heart, Lung, and Blood Institute (N01-HC-25195). The funding
source had no role in the design, conduct, or reporting of the study or
in the decision to submit the report for publication. Any opinions,
findings, conclusions, or recommendations expressed in this publication
are those of the authors and do not necessarily reflect the view of the
US Department of Agriculture.
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PU KARGER
PI BASEL
PA ALLSCHWILERSTRASSE 10, CH-4009 BASEL, SWITZERLAND
SN 0250-8095
J9 AM J NEPHROL
JI Am. J. Nephrol.
PY 2012
VL 36
IS 1
BP 68
EP 77
DI 10.1159/000339005
PG 10
WC Urology & Nephrology
SC Urology & Nephrology
GA 966BR
UT WOS:000305812300009
PM 22722822
ER
PT J
AU Douds, DD
Lee, J
Rogers, L
Lohman, ME
Pinzon, N
Ganser, S
AF Douds, D. D., Jr.
Lee, J.
Rogers, L.
Lohman, M. E.
Pinzon, N.
Ganser, S.
TI Utilization of inoculum of AM fungi produced on-farm for the production
of Capsicum annuum: A summary of seven years of field trials on a
conventional vegetable farm
SO BIOLOGICAL AGRICULTURE & HORTICULTURE
LA English
DT Article
DE bell pepper; Capsicum annuum; high P soil; sustainable agriculture
ID ARBUSCULAR MYCORRHIZAL FUNGI; HIGH P-SOIL; BELL PEPPER; DROUGHT
RESISTANCE; GROWTH-RESPONSES; NUTRIENT CONTENT; ORGANIC-MATTER;
INOCULATION; YIELD; PLANTS
AB Utilization of arbuscular mycorrhizal (AM) fungus inoculum has been encouraged as a way for vegetable farmers to better utilize the AM symbiosis. On-farm systems can economically produce inoculum that has been shown to increase the yield of specific crops. Seven years of field studies were conducted with five or six cultivars of bell pepper (Capsicum annuum L.) each year to transfer the on-farm inoculum production and utilization system to a conventional vegetable farm with high soil available P, typical of the mid-Atlantic region of the US (159 mg kg(-1) soil). Seedlings were inoculated in the greenhouse with a mixed species inoculum of AM fungi produced on that farm. Performance of the inoculation treatment was evaluated based on growth response in the greenhouse and fruit production in the field. Colonization levels were typically only 3% of root length at the time of outplanting. Growth response in the greenhouse and yield response in the field varied by cultivar and the two measures were typically inversely proportional. Overall, mean fruit yield was not significantly different between inoculated and uninoculated plants; however, cv. Boynton Bell exhibited a significant positive response to inoculation (9.1 +/- 2.4%) over the years. The results of this seven-year study illustrate the reliability of the on-farm method of AM fungus inoculum production; however, the lack of a significant yield response for most cultivars studied reflects the current debate surrounding the functional role of AM fungi in high P soils.
C1 [Douds, D. D., Jr.; Lee, J.; Rogers, L.] USDA ARS ERRC, Wyndmoor, PA 19038 USA.
[Lohman, M. E.; Pinzon, N.] Rodale Inst Expt Farm, Kutztown, PA 19530 USA.
[Ganser, S.] Eagle Point Farm, Kutztown, PA 19530 USA.
RP Douds, DD (reprint author), USDA ARS ERRC, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM david.douds@ars.usda.gov
FU USDA-CSRSEES [LNE03-179]
FX This work was supported in part with support from grant no. LNE03-179
from the USDA-CSRSEES Sustainable Agriculture Research and Education
program. We would like to thank J. Phillips for statistical advice and
S. Campbell and the many Rodale Institute interns who helped with
harvesting and analysis over the years.
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PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0144-8765
EI 2165-0616
J9 BIOL AGRIC HORTIC
JI Biol. Agric. Hortic.
PY 2012
VL 28
IS 2
BP 129
EP 145
DI 10.1080/01448765.2012.693362
PG 17
WC Agronomy; Horticulture
SC Agriculture
GA 957QA
UT WOS:000305176500006
ER
PT J
AU Cochrane, MA
Moran, CJ
Wimberly, MC
Baer, AD
Finney, MA
Beckendorf, KL
Eidenshink, J
Zhu, Z
AF Cochrane, M. A.
Moran, C. J.
Wimberly, M. C.
Baer, A. D.
Finney, M. A.
Beckendorf, K. L.
Eidenshink, J.
Zhu, Z.
TI Estimation of wildfire size and risk changes due to fuels treatments
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE FARSITE; fire behaviour; fire extent; fire management; fire modelling;
fire risk; fire spread
ID WILDLAND-URBAN INTERFACE; CROWN FIRE; UNITED-STATES; LANDSCAPE; FOREST;
BEHAVIOR; PRINCIPLES; SIMULATION; REDUCTION; SEVERITY
AB Human land use practices, altered climates, and shifting forest and fire management policies have increased the frequency of large wildfires several-fold. Mitigation of potential fire behaviour and fire severity have increasingly been attempted through pre-fire alteration of wildland fuels using mechanical treatments and prescribed fires. Despite annual treatment of more than a million hectares of land, quantitative assessments of the effectiveness of existing fuel treatments at reducing the size of actual wildfires or how they might alter the risk of burning across landscapes are currently lacking. Here, we present a method for estimating spatial probabilities of burning as a function of extant fuels treatments for any wildland fire-affected landscape. We examined the landscape effects of more than 72 000 ha of wildland fuel treatments involved in 14 large wildfires that burned 314 000 ha of forests in nine US states between 2002 and 2010. Fuels treatments altered the probability of fire occurrence both positively and negatively across landscapes, effectively redistributing fire risk by changing surface fire spread rates and reducing the likelihood of crowning behaviour. Trade offs are created between formation of large areas with low probabilities of increased burning and smaller, well-defined regions with reduced fire risk.
C1 [Cochrane, M. A.; Moran, C. J.; Wimberly, M. C.; Baer, A. D.] S Dakota State Univ, Ctr Excellence, Brookings, SD 57007 USA.
[Finney, M. A.] US Forest Serv, USDA, Missoula Fire Sci Lab, Missoula, MT 59808 USA.
[Beckendorf, K. L.] US Geol Survey, ASRC, Res & Technol Solut, Earth Resources Observat & Sci EROS, Sioux Falls, SD 57198 USA.
[Eidenshink, J.] US Geol Survey, Ctr Earth Resources Observat & Sci EROS, Sioux Falls, SD 57198 USA.
[Zhu, Z.] US Geol Survey, Reston, VA 20192 USA.
RP Cochrane, MA (reprint author), S Dakota State Univ, Ctr Excellence, Brookings, SD 57007 USA.
EM mark.cochrane@sdstate.edu
OI Wimberly, Michael/0000-0003-1549-3891
FU Joint Fire Science Program [07CRAG0001]
FX This research was funded by the Joint Fire Science Program (grant number
07CRAG0001). We thank Birgit Peterson and Jim Vogelmann for reviewing
earlier versions of the manuscript and the many land managers who
provided fuels treatment and wildfire data. Several additional
individuals provided assistance with data collection (Chris Barber,
Izaya Numata, Don Ohlen, Sarah Arnold, Narayanaraj Ganapathy, Aaron
Stingley and Brad Strichertz) and expert opinion during field visits.
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PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 4
BP 357
EP 367
DI 10.1071/WF11079
PG 11
WC Forestry
SC Forestry
GA 961YS
UT WOS:000305506100004
ER
PT J
AU Koo, E
Linn, RR
Pagni, PJ
Edminster, CB
AF Koo, Eunmo
Linn, Rodman R.
Pagni, Patrick J.
Edminster, Carleton B.
TI Modelling firebrand transport in wildfires using HIGRAD/FIRETEC
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE coupled-physics fire model; spotting; WUI fires
ID FIRE BEHAVIOR; FUEL BEDS; NUMERICAL SIMULATIONS; IGNITION; WIND;
GENERATION; ATMOSPHERE; RELEVANT
AB Firebrand transport is studied for disc and cylindrical firebrands by modelling their trajectories with a coupled-physics fire model, HIGRAD/FIRETEC. Through HIGRAD/FIRETEC simulations, the size of possible firebrands and travelled distances are analysed to assess spot ignition hazard. Trajectories modelled with and without the assumption that the firebrands' relative velocities always equal their terminal velocities are. Various models for the flight and combustion of disc-and cylindrical-shaped firebrands are evaluated. Eight simulations are performed with surface fuel fires and four simulations are performed with combined surface and canopy fuels. Firebrand trajectories without terminal velocity are larger than those from models with terminal velocity. Discs travel further than cylinders, as discs are aerodynamically more favourable. Thin discs burning on their faces and tall cylinders burning around their circumference have shorter lifetimes than thin discs burning from their circumference or longer cylinders burning from their ends. Firebrands from canopy fires, with larger size and potential to ignite recipient fuel, travel further than firebrands from surface fires. In the simulations, which included a line fire ignition in homogeneous fuels on flat terrain, the firebrand launching patterns are very heterogeneous, and the trajectories and landing patterns are dominated by the coupled fire-atmosphere behaviour.
C1 [Koo, Eunmo; Linn, Rodman R.] Los Alamos Natl Lab, Earth & Environm Sci Div, Los Alamos, NM 87544 USA.
[Pagni, Patrick J.] Univ Calif Berkeley, Dept Mech Engn, Berkeley, CA 94720 USA.
[Edminster, Carleton B.] US Forest Serv, Rocky Mt Res Stn, USDA, Flagstaff, AZ 86001 USA.
RP Koo, E (reprint author), Los Alamos Natl Lab, Earth & Environm Sci Div, POB 1663, Los Alamos, NM 87544 USA.
EM koo_e@lanl.gov
OI Koo, Eunmo/0000-0001-9943-9694
FU Rocky Mountain Research Station of the USDA Forest Service; Joint Fire
Science Program [07-1-5-01]
FX The Los Alamos National Laboratory Institutional Computing Program
provided critical computing resources for this work. The Rocky Mountain
Research Station of the USDA Forest Service and Joint Fire Science
Program provided financial support for this work under project number
07-1-5-01. The authors are grateful to Judith Winterkemp for her
generous help in writing this paper.
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PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 4
BP 396
EP 417
DI 10.1071/WF09146
PG 22
WC Forestry
SC Forestry
GA 961YS
UT WOS:000305506100008
ER
PT J
AU Estes, BL
Knapp, EE
Skinner, CN
Uzoh, FCC
AF Estes, Becky L.
Knapp, Eric E.
Skinner, Carl N.
Uzoh, Fabian C. C.
TI Seasonal variation in surface fuel moisture between unthinned and
thinned mixed conifer forest, northern California, USA
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE fire behaviour; fuel reduction treatments; large-diameter fuels;
microclimate
ID PONDEROSA PINE FORESTS; COARSE WOODY DEBRIS; REDUCTION TREATMENTS;
PRESCRIBED FIRE; CROWN FIRE; OREGON; RESTORATION; SEVERITY; WILDFIRE;
ARIZONA
AB Reducing stand density is often used as a tool for mitigating the risk of high-intensity crown fires. However, concern has been expressed that opening stands might lead to greater drying of surface fuels, contributing to increased fire risk. The objective of this study was to determine whether woody fuel moisture differed between unthinned and thinned mixed-conifer stands. Sections of logs representing the 1000- and 10 000-h fuel sizes were placed at 72 stations within treatment units in the fall (autumn) of 2007. Following snow-melt in 2008, 10-h fuel sticks were added and all fuels were weighed every 1-2 weeks from May until October. Moisture of the 1000- and 10 000-h fuels peaked at the end of May, and then decreased steadily through the season. Moisture of the 10- and 1000-h fuels did not differ between unthinned and thinned stands at any measurement time. The 10 000-h fuel moisture was significantly less in thinned than unthinned stands only in early to mid-May. Overall, even when fuel moisture varied between treatments, differences were small. The long nearly precipitation-free summers in northern California appear to have a much larger effect on fuel moisture than the amount of canopy cover. Fuel moisture differences resulting from stand thinning would therefore not be expected to substantially influence fire behaviour and effects during times of highest fire danger in this environment.
C1 [Estes, Becky L.; Knapp, Eric E.; Skinner, Carl N.; Uzoh, Fabian C. C.] US Forest Serv, USDA, Pacific SW Res Stn, Redding, CA 96002 USA.
RP Estes, BL (reprint author), Eldorado Natl Forest, 100 Forni Rd, Placerville, CA 95667 USA.
EM bestes@fs.fed.us
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PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 4
BP 428
EP 435
DI 10.1071/WF11056
PG 8
WC Forestry
SC Forestry
GA 961YS
UT WOS:000305506100010
ER
PT J
AU Diffendorfer, J
Fleming, GM
Tremor, S
Spencer, W
Beyers, JL
AF Diffendorfer, Jay
Fleming, Genie M.
Tremor, Scott
Spencer, Wayne
Beyers, Jan L.
TI The role of fire severity, distance from fire perimeter and vegetation
on post-fire recovery of small-mammal communities in chaparral
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE coastal sage scrub; fire management; shrubland
ID COASTAL SAGE SCRUB; RODENT COMMUNITY; CALIFORNIA; ABUNDANCE; POPULATION;
SHRUBLANDS; SUCCESSION; HABITAT
AB Chaparral shrublands in southern California, US, exhibit significant biodiversity but are prone to large, intense wildfires. Debate exists regarding fuel reduction to prevent such fires in wildland areas, but the effects of these fires on fauna are not well understood. We studied whether fire severity and distance from unburned fire perimeter influenced recovery of the small-mammal community from 13 to 39 months after the large (1134.2 km(2)) Cedar fire in San Diego County. In general, neither factor influenced small-mammal recovery. However, vegetation characteristics, distance to riparian habitat and the prevalence of rocky substrate affected recovery in species-specific patterns. This indicates the effects of fire severity and immigration from outside the fire perimeter, if they occur, do so within 1 year, whereas longer-term recovery is largely driven by previously known relationships between small mammals and habitat structure. Our results, when combined with results from other studies in southern California, suggest where human lives or infrastructure are not at risk, efforts to preserve chaparral biodiversity should focus on maintaining the native plant community. Doing so may require novel management strategies in the face of an increasing human population, ignition sources and the spread of invasive exotic plants.
C1 [Diffendorfer, Jay] US Geol Survey, Rocky Mt Geog Sci Ctr, Denver, CO 80225 USA.
[Fleming, Genie M.; Tremor, Scott] San Diego Nat Hist Museum, San Diego, CA 92112 USA.
[Spencer, Wayne] Conservat Biol Inst, San Diego, CA 92116 USA.
[Beyers, Jan L.] US Forest Serv, USDA, Pacific SW Res Stn, Forest Fire Lab, Riverside, CA 92507 USA.
RP Diffendorfer, J (reprint author), US Geol Survey, Rocky Mt Geog Sci Ctr, POB 25046,MS 507, Denver, CO 80225 USA.
EM jediffendorfer@usgs.gov
OI Diffendorfer, James/0000-0003-1093-6948
FU Joint Fire Science Program [042194]
FX This study was supported by a grant to the Forest Service Pacific
Southwest Research Station, San Diego Natural History Museum and
Conservation Biology Institute from the Joint Fire Science Program (no.
042194) and additional support from a challenge cost-share agreement
with the Cleveland National Forest. We thank Kirsten Winter for her
support in arranging the latter. We greatly appreciate the field work
performed by Jennifer Duggan, Megan Jennings, Justin Joe, Dana
McLaughlin, Dana Morin, Mark Parlow, Paula Potenza, Paul Schuette,
Angelo Soto-Centeno and Catherine Yang. We thank Jenny Briggs, Milan
Mitrovich and anonymous Forest Service reviewers for their fine and
constructive comments. Any use of trade, product or firm names is for
descriptive purposes only and does not imply endorsement by the US
Government.
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PI CLAYTON
PA UNIPARK, BLDG 1, LEVEL 1, 195 WELLINGTON RD, LOCKED BAG 10, CLAYTON, VIC
3168, AUSTRALIA
SN 1049-8001
EI 1448-5516
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 4
BP 436
EP 448
DI 10.1071/WF10060
PG 13
WC Forestry
SC Forestry
GA 961YS
UT WOS:000305506100011
ER
PT J
AU Jaradat, AA
AF Jaradat, Abdullah A.
TI REPRODUCTIVE ALLOCATION AND NUTRIENT RELATIONSHIPS IN CUPHEA: A
SEMI-DOMESTICATED OILSEED CROP
SO JOURNAL OF PLANT NUTRITION
LA English
DT Article
DE allometry; Cuphea; C:N:P ratios; ontogeny; reproductive mass;
stoichiometry
ID N-P STOICHIOMETRY; PLANT-GROWTH; ALLOMETRY; PHOSPHORUS; NITROGEN; LEAF;
HYPOTHESIS; PLASTICITY; NUTRITION; DENSITY
AB Interrelationships between ontogeny, allometric mass, and carbon (C):nitrogen (N):phosphorus (P) ratios were quantified in Cuphea, a semi-domesticated indeterminate and phenotypically plastic potential oilseed crop. Relative growth rate and net assimilation rate were estimated as functions of growth stages, phenotypic traits and C:N:P ratios. Ontogenically, N:P ratios in reproductive and metabolic tissues were least variable and were mainly affected by allometric leaf mass and relative growth rate. Reproductive mass is best predicted by allometric stem mass and C:N ratio in structural and metabolic tissues; whereas, net assimilation rate is best predicted by allometric total branch length and relative growth rate. The conservative N:P ratios found in reproductive and metabolic tissues are important in determining reproductive allocation in Cuphea. Large antagonistic effects of C:N on N:P ratios found in different plant tissues suggest that maximum reproductive allocation can be attained by manipulating N:P ratio during ontogeny. A greater investment of resources in reproduction may be possible for this semi-domesticated crop if nutrient and mass allocation to supporting stems and roots can be altered for the benefit of reproductive biomass.
C1 ARS, USDA, Morris, MN 56267 USA.
RP Jaradat, AA (reprint author), ARS, USDA, 803 Iowa Ave, Morris, MN 56267 USA.
EM abdullah.jaradat@ars.usda.gov
NR 28
TC 1
Z9 2
U1 0
U2 8
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0190-4167
J9 J PLANT NUTR
JI J. Plant Nutr.
PY 2012
VL 35
IS 10
BP 1579
EP 1599
DI 10.1080/01904167.2012.690922
PG 21
WC Plant Sciences
SC Plant Sciences
GA 965IE
UT WOS:000305760100012
ER
PT S
AU Chuang, YK
Chen, SM
Delwiche, SR
Lo, YM
Tsai, CY
Yang, IC
Hu, YP
AF Chuang, Yung-Kun
Chen, Suming
Delwiche, Stephen R.
Lo, Y. Martin
Tsai, Chao-Yin
Yang, I-Chang
Hu, Yi-Ping
BE Kim, MS
Tu, SI
Chao, K
TI Integration of Independent Component Analysis with Near Infrared
Spectroscopy for Evaluation of Rice Freshness
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE Rice; freshness; near infrared (NIR); independent component analysis
(ICA)
ID REFLECTANCE SPECTROSCOPY; REGRESSION; CONSTITUENTS
AB Determination of freshness is an important issue for rice quality. Near infrared (NIR) spectroscopy, a rapid non-destructive inspection method based on specific absorptions within a given range of wavelengths corresponding to the constituents in the sample, has been widely applied for evaluation of internal quality of agricultural products. Since NIR spectra of a mixture may be approximated as the linear addition of individual spectra of the constituents in the mixture, such a mixture spectrum thus can be regarded as 'blind sources' as the proportion of constituents in the samples remains unknown. A multiuse statistical approach, independent component analysis (ICA), is capable of disassembling the mixture signals of Gaussian distribution into non-Gaussian independent constituents, and (with assumption of independent constituent spectral response) can give a complete explanation about the property of constituents in the mixture. By example, a total of 180 white rice samples were collected from 6 crop seasons (from 2006 to 2010) for the purpose of developing an ICA NIR based procedure for rice freshness., Values of pH were determined by a conventional (bromothymol blue methyl red) method. The calibration model of white rice yielded R-c = 0.939, SEC = 0.202, r(p) = 0.803 and SEP = 0.233 using original full wavelength range (400 to 2498 nm) spectra and 5 independent components (ICs). Freshness of the white rice can be distinguished either visually by 3-dimensional diagram composed from ICs 2, 3 and 4, or statistically by a calibration model. The results show that ICA with NIR can quickly identify and effectively quantify the pH value in white rice with high predictability, and has the potential to be a useful tool for evaluating rice freshness.
C1 [Chuang, Yung-Kun; Chen, Suming; Hu, Yi-Ping] Natl Taiwan Univ, Dept Bioind Mechatron Engn, 1,Sec 4,Roosevelt Rd, Taipei 10617, Taiwan.
[Chuang, Yung-Kun; Lo, Y. Martin; Yang, I-Chang] Univ Maryland, Dept Nutr & Food Sci, College Pk, MD 20742 USA.
[Chuang, Yung-Kun; Delwiche, Stephen R.; Yang, I-Chang] USDA ARS, Beltsville Agr Res Ctr, Food Qual Lab, Beltsville, MD 20705 USA.
[Chen, Suming; Tsai, Chao-Yin] Natl Taiwan Univ, Bioenergy Res Ctr, Taipei 10617, Taiwan.
RP Chuang, YK (reprint author), Natl Taiwan Univ, Dept Bioind Mechatron Engn, 1,Sec 4,Roosevelt Rd, Taipei 10617, Taiwan.
NR 22
TC 1
Z9 1
U1 2
U2 5
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 83690X
DI 10.1117/12.921309
PG 7
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600026
ER
PT S
AU Lim, J
Mo, C
Noh, SH
Kang, S
Lee, K
Kim, MS
AF Lim, Jongguk
Mo, Changyeun
Noh, Sang Ha
Kang, Sukwon
Lee, Kangjin
Kim, Moon S.
BE Kim, MS
Tu, SI
Chao, K
TI Capsaicinoids Content Prediction Model Development for Korean Red-pepper
Powder Using a Visible and Near-infrared Spectroscopy
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE Red-pepper powder; pungency; visible and near-infrared
AB A nondestructive, real-time pungency measuring system with visible and near-infrared spectroscopy has been recently developed to measure capsaicinoids content in Korean red-pepper powder. One hundred twenty-five red-pepper powder samples produced from 11 regions in Republic of Korea were used for this investigation. The visible and near-infrared absorption spectra in the range from 450 to 950 nm were acquired and used for the development of prediction models of capsaicinoids contents in red-pepper powders without any chemical pretreatment to the samples. Partial Least Squares Regression (PLSR) models were developed to predict the regional capsaicinoids contents using the acquired absorption spectra. The chemical analysis of the total capsaicinoids (capsaicin and dihydrocapsaicin) was performed by a high performance liquid chromatographic (HPLC) method. The determination coefficient of validation (R-V(2)) and the standard error of prediction (SEP) for the capsaicinoids content prediction model, for a representative region in this study, were 0.9585 and +/- 10.147 mg/100g, respectively.
C1 [Lim, Jongguk; Mo, Changyeun; Kang, Sukwon; Lee, Kangjin] Natl Acad Agr Sci, Rural Dev Adm, 88-2 Seodun Dong, Suwon 441100, Gyeonggi Do, South Korea.
[Noh, Sang Ha] Seoul Natl Univ, Dept Biosyst & Biomat Sci & Engn, Seoul 151921, South Korea.
[Kim, Moon S.] USDA, ARS, Environm Microbiol & Food Safety Lab, Beltsville, MD 20705 USA.
RP Lim, J (reprint author), Natl Acad Agr Sci, Rural Dev Adm, 88-2 Seodun Dong, Suwon 441100, Gyeonggi Do, South Korea.
NR 12
TC 0
Z9 1
U1 4
U2 6
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 83690Z
DI 10.1117/12.923656
PG 8
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600028
ER
PT S
AU Park, B
Windham, WR
Ladely, SR
Gurram, P
Kwon, H
Yoon, SC
Lawrence, KC
Narrang, N
Cray, WC
AF Park, Bosoon
Windham, William R.
Ladely, Scott R.
Gurram, Prudhvi
Kwon, Heesung
Yoon, Seung-Chul
Lawrence, Kurt C.
Narrang, Neelam
Cray, William C.
BE Kim, MS
Tu, SI
Chao, K
TI Classification of Shiga toxin-producing Escherichia coli (STEC)
Serotypes with Hyperspectral Microscope Imagery
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE Escherichia coli; Hyperspectral; Acousto-Optical Tunable Filter; Dark
field illumination; Microscopy; Foodborne Pathogen; Bacteria; STEC
ID OUTBREAKS; SYSTEM
AB Non-O157:H7 Shiga toxin-producing Escherichia coli (STEC) strains such as O26, O45, O103, O111, O121 and O145 are recognized as serious outbreak to cause human illness due to their toxicity. A conventional microbiological method for cell counting is laborious and needs long time for the results. Since optical detection method is promising for real-time, in-situ foodborne pathogen detection, acousto-optical tunable filters (AOTF)-based hyperspectral microscopic imaging (HMI) method has been developed for identifying pathogenic bacteria because of its capability to differentiate both spatial and spectral characteristics of each bacterial cell from microcolony samples. Using the AOTF-based HMI method, 89 contiguous spectral images could be acquired within approximately 30 seconds with 250 ms exposure time. From this study, we have successfully developed the protocol for live-cell immobilization on glass slides to acquire quality spectral images from STEC bacterial cells using the modified dry method. Among the contiguous spectral imagery between 450 and 800 nm, the intensity of spectral images at 458, 498, 522, 546, 570, 586, 670 and 690 nm were distinctive for STEC bacteria. With two different classification algorithms, Support Vector Machine (SVM) and Sparse Kernel-based Ensemble Learning (SKEL), a STEC serotype O45 could be classified with 92% detection accuracy.
C1 [Park, Bosoon; Windham, William R.; Yoon, Seung-Chul; Lawrence, Kurt C.] ARS, USDA, Russell Res Ctr, Athens, GA 30605 USA.
RP Park, B (reprint author), ARS, USDA, Russell Res Ctr, Athens, GA 30605 USA.
EM bosoon.park@ars.usda.gov
NR 27
TC 1
Z9 1
U1 0
U2 0
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 83690L
DI 10.1117/12.919695
PG 13
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600018
ER
PT S
AU Qin, JW
Chao, KL
Kim, MS
AF Qin, Jianwei
Chao, Kuanglin
Kim, Moon S.
BE Kim, MS
Tu, SI
Chao, K
TI Detecting Multiple Adulterants in Dry Milk using Raman Chemical Imaging
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE Raman imaging; Quality and safety; Milk; Adulterant; Mixture analysis
ID NEAR-INFRARED SPECTROSCOPY; NMR-SPECTROSCOPY; POWDERED MILK;
QUANTIFICATION; MELAMINE
AB This study investigated the potential of Raman chemical imaging for simultaneously detecting multiple adulterants in milk powder. Potential chemical adulterants, including ammonium sulfate, dicyandiamide, melamine, and urea, were together mixed into nonfat dry milk in the concentration range of 0.1%-5.0% for each adulterant. A benchtop point-scan Raman imaging system using a 785-nm laser was assembled to acquire hyperspectral images in the wavenumber range of 102-2538 cm(-1). Each mixture was imaged in an area of 25x25 mm(2) with a spatial resolution of 0.25 mm. Self-modeling mixture analysis (SMA) was used to extract pure component spectra, by which the four types of the adulterants were identified at all concentration levels based on their spectral information divergence values to the reference spectra. Raman chemical images were created using the contribution images from SMA, and their use to effectively visualize identification and spatial distribution of the multiple adulterant particles in the dry milk was demonstrated.
C1 [Qin, Jianwei; Chao, Kuanglin; Kim, Moon S.] USDA ARS, Environm Microbial & Food Safety Lab, BARC E, Beltsville, MD 20705 USA.
RP Qin, JW (reprint author), USDA ARS, Environm Microbial & Food Safety Lab, BARC E, Bldg 303,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM jianwei.qin@ars.usda.gov
NR 16
TC 0
Z9 0
U1 0
U2 9
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 83690H
DI 10.1117/12.918584
PG 12
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600014
ER
PT S
AU Rao, XQ
Yang, CC
Ying, YB
Kim, MS
Chao, KL
AF Rao, Xiuqin
Yang, Chun-Chieh
Ying, Yibin
Kim, Moon S.
Chao, Kuanglin
BE Kim, MS
Tu, SI
Chao, K
TI Classification of Korla Fragrant Pears Using NIR Hyperspectral Imaging
Analysis
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE fruit quality; hyperspectral image; Classification; korla fragrant pears
AB Korla fragrant pears are small oval pears characterized by light green skin, crisp texture, and a pleasant perfume for which they are named. Anatomically, the calyx of a fragrant pear may be either persistent or deciduous; the deciduous-calyx fruits are considered more desirable due to taste and texture attributes. Chinese packaging standards require that packed cases of fragrant pears contain 5% or less of the persistent-calyx type. Near-infrared hyperspectral imaging was investigated as a potential means for automated sorting of pears according to calyx type. Hyperspectral images spanning the 992-1681 nm region were acquired using an EMCCD-based laboratory line-scan imaging system. Analysis of the hyperspectral images was performed to select wavebands useful for identifying persistent-calyx fruits and for identifying deciduous-calyx fruits. Based on the selected wavebands, an image-processing algorithm was developed that targets automated classification of Korla fragrant pears into the two categories for packaging purposes.
C1 [Rao, Xiuqin; Ying, Yibin] Zhejiang Univ, Sch Biosyst & Food Sci, 866 Yuhangtan Rd, Hangzhou 310030, Zhejiang, Peoples R China.
[Yang, Chun-Chieh; Kim, Moon S.; Chao, Kuanglin] USDA, ARS, Environm Microbial & Food Safety Lab, Beltsville, MD 20705 USA.
RP Rao, XQ (reprint author), Zhejiang Univ, Sch Biosyst & Food Sci, 866 Yuhangtan Rd, Hangzhou 310030, Zhejiang, Peoples R China.
EM kevin.chao@ars.usda.gov
RI Ying, Yibin/H-6839-2013
FU The National Key Technology RD Program [2011BAD20B12]
FX The authors gratefully acknowledge the financial support provided by The
National Key Technology R&D Program (2011BAD20B12).
NR 1
TC 0
Z9 0
U1 0
U2 8
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 83690Y
DI 10.1117/12.922686
PG 8
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600027
ER
PT S
AU Sundaram, J
Park, B
Hinton, A
Yoon, SC
Lawrence, KC
AF Sundaram, Jaya
Park, Bosoon
Hinton, Arthur
Yoon, Seung Chul
Lawrence, Kurt C.
BE Kim, MS
Tu, SI
Chao, K
TI Identification and characterization of Salmonella serotypes using DNA
spectral characteristics by Fourier Transform Infrared (FT-IR)
spectroscopy
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE DNA macromolecules; FT-IR spectroscopy; Salmonella; Attenuated Total
Reflection; Principal Component Analysis; Loading values
ID ENTERICA SEROVARS; MIDINFRARED SPECTROSCOPY; DIFFERENTIATION; FOOD;
CHEMOMETRICS; LIVE
AB Analysis of DNA samples of Salmonella serotypes were performed using FT-IR spectrometer by placing directly in contact with a diamond attenuated total reflection (ATR) crystal. Spectra were recorded from 4000 cm(-1) to 525 cm(-1) wavenumber with the resolution of 4 cm(-1) and data spacing of 1.928 cm(-1). Collected spectra were subtracted from the background spectra of empty diamond crystal surface. Principal Component Analysis (PCA) was conducted at four different spectral regions to differentiate the different serotypes of Salmonella on the basis of difference in their spectral features of DNA structure macromolecules. PCA was used to show the natural clusters in the data set and to describe the difference between the sample clusters. At the region 1800 - 1200 cm(-1), PC1 distinguished 93 % and PC2 distinguished 7 % of the serotypes. Therefore, maximum classification of 100 % in total was obtained at this region. For all the Salmonella serotypes, the frequency between 1000-1150 cm(-1) and 1170 - 1280 cm(-1) had higher loading values which showed their significant contribution in the serotype classification.
C1 [Sundaram, Jaya; Park, Bosoon; Hinton, Arthur; Yoon, Seung Chul; Lawrence, Kurt C.] ARS, Russell Res Ctr, USDA, Athens, GA 30605 USA.
RP Sundaram, J (reprint author), ARS, Russell Res Ctr, USDA, 950 Coll Stn Rd, Athens, GA 30605 USA.
NR 22
TC 0
Z9 0
U1 0
U2 2
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 83690O
DI 10.1117/12.918585
PG 15
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600020
ER
PT S
AU Tang, XY
Li, CL
Peng, YK
Chao, KL
Wang, MW
AF Tang, Xiuying
Li, Cuiling
Peng, Yankun
Chao, Kuanglin
Wang, Mingwu
BE Kim, MS
Tu, SI
Chao, K
TI Nondestructive prediction of pork freshness parameters using
multispectral scattering images
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE pork freshness; non-destructive inspection; Lorentzian distribution
function; discriminant analysis method
ID APPLE FRUIT FIRMNESS
AB Optical technology is an important and immerging technology for non-destructive and rapid detection of pork freshness. This paper studied on the possibility of using multispectral imaging technique and scattering characteristics to predict the freshness parameters of pork meat. The pork freshness parameters selected for prediction included total volatile basic nitrogen (TVB-N), color parameters (L *, a *, b *), and pH value. Multispectral scattering images were obtained from pork sample surface by a multispectral imaging system developed by ourselves; they were acquired at the selected narrow wavebands whose center wavelengths were 517,550, 560, 580, 600, 760, 810 and 910nm. In order to extract scattering characteristics from multispectral images at multiple wavelengths, a Lorentzian distribution (LD) function with four parameters (a: scattering asymptotic value; b: scattering peak; c: scattering width; d: scattering slope) was used to fit the scattering curves at the selected wavelengths. The results show that the multispectral imaging technique combined with scattering characteristics is promising for predicting the freshness parameters of pork meat.
C1 [Tang, Xiuying; Li, Cuiling; Peng, Yankun; Wang, Mingwu] China Agr Univ, 17 Qinghua E Rd, Beijing 100083, Peoples R China.
[Chao, Kuanglin] USDA, ARS, EMFSL, Beltsville, MD 20705 USA.
RP Tang, XY (reprint author), China Agr Univ, 17 Qinghua E Rd, Beijing 100083, Peoples R China.
EM ypeng@cau.edu.cn
FU Agro-scientific Research in the Public Interest Program
[201003008]; National Science and Technology [2012BAH04B00]
FX The authors gratefully acknowledge the Special Fund for
Agro-scientific Research in the Public Interest Program (Project
No. 201003008), and the National Science and Technology Support
Program (Project No. 2012BAH04B00) for supporting this research.
NR 18
TC 1
Z9 1
U1 0
U2 8
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 836912
DI 10.1117/12.923811
PG 9
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600029
ER
PT S
AU Yang, CC
Kim, MS
Millner, P
Chao, KL
Chan, DE
AF Yang, Chun-Chieh
Kim, Moon S.
Millner, Pat
Chao, Kuanglin
Chan, Diane E.
BE Kim, MS
Tu, SI
Chao, K
TI The Development of the Line-Scan Image Recognition Algorithm for the
Detection of Frass on Mature Tomatoes
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE hyperspectral image; multispectral image; food safety; fresh produce;
line scan; machine vision
ID ESCHERICHIA-COLI O157H7; QUALITY; SYSTEM; SAFETY
AB In this research, a multispectral algorithm derived from hyperspectral line-scan fluorescence imaging under violet LED excitation was developed for the detection of frass contamination on mature tomatoes. The algorithm utilized the fluorescence intensities at two wavebands, 664 nm and 690 nm, for computation of the simple ratio function for effective detection of frass contamination. The contamination spots were created on the tomato surfaces using four concentrations of aqueous frass dilutions. The algorithms could detect more than 99% of the 0.2 g/ml and 0.1 g/ml frass contamination spots and successfully differentiated these spots from clean tomato surfaces. The results demonstrated that the simple multispectral fluorescence imaging algorithms based on violet LED excitation can be appropriate to detect frass on tomatoes in high-speed post-harvest processing lines.
C1 [Yang, Chun-Chieh; Kim, Moon S.; Millner, Pat; Chao, Kuanglin; Chan, Diane E.] USDA ARS, Environm Microbial & Food Safety Lab, BARC E, Beltsville, MD 20705 USA.
RP Yang, CC (reprint author), USDA ARS, Environm Microbial & Food Safety Lab, BARC E, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
NR 15
TC 0
Z9 0
U1 0
U2 5
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 836908
DI 10.1117/12.918427
PG 7
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600005
ER
PT S
AU Yoon, SC
Windham, WR
Ladely, S
Heitschmidt, GW
Lawrence, KC
Park, B
Narang, N
Cray, WC
AF Yoon, Seung Chul
Windham, William R.
Ladely, Scott
Heitschmidt, Gerald. W.
Lawrence, Kurt C.
Park, Bosoon
Narang, Neelam
Cray, William C.
BE Kim, MS
Tu, SI
Chao, K
TI Hyperspectral imaging for detection of non-O157 Shiga-toxin producing
Escherichia coli (STEC) serogroups on spread plates of mixed cultures
SO SENSING FOR AGRICULTURE AND FOOD QUALITY AND SAFETY IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Sensing for Agriculture and Food Quality and Safety IV
CY APR 24-25, 2012
CL Baltimore, MD
SP SPIE
DE Pathogen detection; Hyperspectral imaging; Shiga-toxin producing
Escherichia coli; STEC; non-O157 serogroups; Foodborne pathogen; Spread
plates; Mixed cultures
AB We investigated the feasibility of visible and near-infrared (VNIR) hyperspectral imaging for rapid presumptive-positive screening of six representative non-O157 Shiga-toxin producing Escherichia coli (STEC) serogroups (O26, O45, O103, O111, O121, and O145) on spread plates of mixed cultures. Although the traditional culture method is still the "gold standard" for presumptive-positive pathogen screening, it is time-consuming, labor-intensive, not effective in testing large amount of food samples, and cannot completely prevent unwanted background microflora from growing together with target microorganisms on agar media. A previous study was performed using the data obtained from pure cultures individually inoculated on spot and/or spread plates in order to develop multivariate classification models differentiating each colony of the six non-O157 STEC serogroups and to optimize the models in terms of parameters. This study dealt with the validation of the trained and optimized models with a test set of new independent samples obtained from colonies on spread plates of mixed cultures. A new validation protocol appropriate to a hyperspectral imaging study for mixed cultures was developed. One imaging experiment with colonies obtained from two serial dilutions was performed. A total of six agar plates were prepared, where O45, O111 and O121 serogroups were inoculated into all six plates and each of O45, O103 and O145 serogroups was added into the mixture of the three common bacterial cultures. The number of colonies grown after 24-h incubation was 331 and the number of pixels associated with the grown colonies was 16,379. The best model found from this validation study was based on pre-processing with standard normal variate and detrending (SNVD), first derivative, spectral smoothing, and k-nearest neighbor classification (kNN, k=3) of scores in the principal component subspace spanned by 6 principal components. The independent testing results showed 95% overall detection accuracy at pixel level and 97% at colony level. The developed model was proven to be still valid even for the independent samples although the size of a test set was small and only one experiment was performed. This study was an important first step in validating and updating multivariate classification models for rapid screening of ground beef samples contaminated by non-O157 STEC pathogens using hyperspectral imaging.
C1 [Yoon, Seung Chul; Windham, William R.; Heitschmidt, Gerald. W.; Lawrence, Kurt C.; Park, Bosoon] USDA ARS, Richard Russell Res Ctr, Athens, GA 30605 USA.
RP Yoon, SC (reprint author), USDA ARS, Richard Russell Res Ctr, Athens, GA 30605 USA.
EM seungchul.yoon@ars.usda.gov
NR 8
TC 1
Z9 1
U1 0
U2 4
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-9047-6
J9 PROC SPIE
PY 2012
VL 8369
AR 836909
DI 10.1117/12.919631
PG 10
WC Food Science & Technology; Optics
SC Food Science & Technology; Optics
GA BAW45
UT WOS:000305740600006
ER
PT J
AU Bier, DM
AF Bier, Dennis M.
TI Safety Standards in Infant Nutrition: A United States Perspective
SO ANNALS OF NUTRITION AND METABOLISM
LA English
DT Article
DE Food safety; Children; GRAS; Federal food; Drug and Cosmetic Act; Food
Safety Modernization Act
AB In the United States, the general standard for food safety is reasonable certainty of causing no harm under the intended conditions of use. In contrast to food safety policy in some other countries, the United States treats foods for infants and children no differently than foods for adults, other than requiring additional standards for infant formulas. In the United States, food safety falls under the regulatory control of more than a dozen government agencies. The principal responsibility is shared by the US Food and Drug Administration (FDA) and the US Department of Agriculture (USDA), but significant additional oversight authority is granted to the Environmental Protection Agency (EPA), the Centers for Disease Control and Prevention (CDC), and others. Furthermore, while a large number of legislative statutes provide the basis for regulatory oversight, the principal laws that govern food safety are the Federal Food, Drug and Cosmetic Act, the Federal Meat, Poultry Products and Egg Products Inspection Acts, and the Food Safety Modernization Act. The latter statute, enacted in 2011, has provided for a broad range of new industry responsibilities for the safe manufacture of food products and has significantly expanded federal enforcement authority for violations. Copyright (C) 2012 S. Karger AG, Basel
C1 [Bier, Dennis M.] Baylor Coll Med, Houston, TX 77030 USA.
RP Bier, DM (reprint author), Baylor Univ, USDA ARS, Childrens Nutr Res Ctr, 1100 Bates St, Houston, TX 77030 USA.
EM dbier@bcm.edu
NR 6
TC 2
Z9 2
U1 0
U2 6
PU KARGER
PI BASEL
PA ALLSCHWILERSTRASSE 10, CH-4009 BASEL, SWITZERLAND
SN 0250-6807
J9 ANN NUTR METAB
JI Ann. Nutr. Metab.
PY 2012
VL 60
IS 3
BP 192
EP 195
DI 10.1159/000338219
PG 4
WC Endocrinology & Metabolism; Nutrition & Dietetics
SC Endocrinology & Metabolism; Nutrition & Dietetics
GA 957US
UT WOS:000305190900004
PM 22699766
ER
PT J
AU Spackman, E
AF Spackman, Erica
TI Viral diagnostics: will new technology save the day?
SO AVIAN PATHOLOGY
LA English
DT Review
ID POLYMERASE-CHAIN-REACTION; INFECTIOUS-BRONCHITIS VIRUS;
NEWCASTLE-DISEASE VIRUS; AVIAN INFLUENZA-VIRUS; FTA(R) FILTER-PAPER;
REAL-TIME PCR; HUMAN-IMMUNODEFICIENCY-VIRUS; REVERSE-TRANSCRIPTASE PCR;
HEPATITIS-B-VIRUS; RAPID DETECTION
AB Technology for infectious agent detection continues to evolve, particularly molecular methods that first emerged in the mid-1970s. The goals of new technology in diagnostics, whether in humans or in animals, including poultry, are to achieve the highest sensitivity and specificity possible to accurately identify the infection status of an individual or flock in the shortest time possible. Ease of use, low cost and increased information from a single test (e.g. multiplexing) are also critical areas frequently targeted for improvement. New tests and modifications of current tests are reported often, and diagnostic tests are now commonly developed by commercial companies. As one would expect, most advances in diagnostic technology are applied first to human health, and then may be adapted to animal health if practical. In the present review the trends and novel innovative technologies in primarily viral diagnostics are reviewed and the practicality of these methods and application for poultry health are discussed briefly. Also, influenza will seem to be over-represented in viral diagnostics since it is frequently used as a proof-of-concept target for novel technology due to its importance for animal and public health. Finally, the review is intended to be a brief survey of some of the innovative diagnostic technologies reported in recent years. It is not entirely comprehensive of all technology and the author makes no claims or endorsements of any of the technology or products mentioned.
C1 ARS, SE Poultry Res Lab, USDA, Athens, GA 30605 USA.
RP Spackman, E (reprint author), ARS, SE Poultry Res Lab, USDA, 934 Coll Stn Rd, Athens, GA 30605 USA.
EM Erica.spackman@ars.usda.gov
NR 76
TC 2
Z9 2
U1 1
U2 17
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0307-9457
J9 AVIAN PATHOL
JI Avian Pathol.
PY 2012
VL 41
IS 3
BP 251
EP 258
DI 10.1080/03079457.2012.675051
PG 8
WC Veterinary Sciences
SC Veterinary Sciences
GA 961MS
UT WOS:000305469100003
PM 22702452
ER
PT J
AU Mays, JK
Silva, RF
Kim, T
Fadly, A
AF Mays, Jody K.
Silva, Robert F.
Kim, Taejoong
Fadly, Aly
TI Insertion of reticuloendotheliosis virus long terminal repeat into a
bacterial artificial chromosome clone of a very virulent Marek's disease
virus alters its pathogenicity
SO AVIAN PATHOLOGY
LA English
DT Article
ID POLYMERASE-CHAIN-REACTION; AVIAN-LEUKOSIS VIRUS; IN-VIVO; RETROVIRUS
INSERTION; FIELD STRAIN; HERPESVIRUS; LTR; INTEGRATION; REPLICATION;
INFECTION
AB Co-cultivation of the JM/102W strain of Marek's disease virus (MDV) with reticuloendotheliosis virus (REV) resulted in the generation of a recombinant MDV containing the REV long terminal repeat (LTR) named the RM1 strain of MDV, a strain that was highly attenuated for oncogenicity but induced severe bursal and thymic atrophy. We hypothesize that the phenotypic changes were solely due to the LTR insertion. Furthermore, we hypothesize that insertion of REV LTR into an analogous location in a different MDV would result in a similar phenotypic change. To test these hypotheses, we inserted the REV LTR into a bacterial artificial chromosome (BAC) clone of a very virulent strain of MDV, Md5, and designated the virus rMd5-RM1-LTR. The rMd5-RM1-LTR virus and the rMd5 virus were passaged in duck embryo fibroblast cells for up to 40 passages before pathogenicity studies. Susceptible chickens were inoculated intra-abdominally at hatch with the viruses rMd5-RM1-LTR, rMd5 BAC parental virus, wild-type strain Md5, or strain RM1 of MDV. The rMd5-RM1-LTR virus was attenuated at cell culture passage 40, whereas the rMd5 BAC without RM1 LTR retained its pathogenicity at cell culture passage 40. Using polymerase chain analysis, the RM1 LTR insert was detected in MDV isolated from buffy coat cells collected from chickens inoculated with rMd5-RM1-LTR, but only at 1 week post inoculation. The data suggest that the presence of the RM1 LTR insert within MDV genome for 1 week post inoculation with virus at hatch is sufficient to cause a reduction in pathogenicity of strain Md5 of MDV.
C1 [Mays, Jody K.; Silva, Robert F.; Kim, Taejoong; Fadly, Aly] ARS, Avian Dis & Oncol Lab, USDA, E Lansing, MI 48823 USA.
[Kim, Taejoong] Michigan State Univ, Dept Microbiol & Mol Genet, E Lansing, MI 48823 USA.
RP Fadly, A (reprint author), ARS, Avian Dis & Oncol Lab, USDA, 4279 E Mt Hope Rd, E Lansing, MI 48823 USA.
EM aly.fadly@ars.usda.gov
NR 40
TC 10
Z9 12
U1 0
U2 1
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0307-9457
J9 AVIAN PATHOL
JI Avian Pathol.
PY 2012
VL 41
IS 3
BP 259
EP 265
DI 10.1080/03079457.2012.675428
PG 7
WC Veterinary Sciences
SC Veterinary Sciences
GA 961MS
UT WOS:000305469100004
PM 22702453
ER
PT J
AU Dunn, JR
Silva, RF
Lee, LF
Witter, RL
AF Dunn, John R.
Silva, Robert F.
Lee, Lucy F.
Witter, Richard L.
TI Competition between two virulent Marek's disease virus strains in vivo
SO AVIAN PATHOLOGY
LA English
DT Article
ID TRANSFORMED-CELLS; INFECTED CHICKENS; HERPESVIRUS; PP38; MUTANT; GENE;
CVI988/RISPENS; PATHOGENICITY; ASSOCIATION; PATHOTYPE
AB Previous studies have demonstrated the presence of multiple strains of Marek's disease virus simultaneously circulating within poultry flocks, leading to the assumption that individual birds are repeatedly exposed to a variety of virus strains in their lifetime. Virus competition within individual birds may be an important factor that influences the outcome of coinfection under field conditions, including the potential outcome of emergence or evolution of more virulent strains. A series of experiments was designed to evaluate virus competition within chickens following simultaneous challenge with two virulent serotype 1 Marek's disease virus strains, using either pathogenically similar (rMd5 and rMd5/pp38CVI) or dissimilar (JM/102W and rMd5/pp38CVI) virus pairs. Bursa of Fabricius, feather follicle epithelium, spleen, and tumour samples were collected at multiple time points to determine the frequency and distribution of each virus present using pyrosequencing, immunohistochemistry and virus isolation. In the similar pair, rMd5 appeared to have a competitive advantage over rMd5/pp38CVI, which in turn had a competitive advantage over the less virulent JM/102W in the dissimilar virus pair. Dominance of one strain over the other was not absolute for either virus pair, as the subordinate virus was rarely eliminated. Interestingly, competition between two viruses with either pair rarely ended in a draw. Further work is needed to identify factors that influence virus-specific dominance to better understand what characteristics favour emergence of one strain in chicken populations at the expense of other strains.
C1 [Dunn, John R.; Silva, Robert F.; Lee, Lucy F.; Witter, Richard L.] ARS, USDA, Avian Dis & Oncol Lab, E Lansing, MI 48823 USA.
RP Dunn, JR (reprint author), ARS, USDA, Avian Dis & Oncol Lab, E Lansing, MI 48823 USA.
EM john.dunn@ars.usda.gov
NR 34
TC 8
Z9 9
U1 0
U2 6
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0307-9457
J9 AVIAN PATHOL
JI Avian Pathol.
PY 2012
VL 41
IS 3
BP 267
EP 275
DI 10.1080/03079457.2012.677804
PG 9
WC Veterinary Sciences
SC Veterinary Sciences
GA 961MS
UT WOS:000305469100005
PM 22702454
ER
PT J
AU Jackson, MA
AF Jackson, Mark A.
TI Dissolved oxygen levels affect dimorphic growth by the entomopathogenic
fungus Isaria fumosorosea
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE blastospores; yeast-like growth; aeration hyphal growth; aeration
bioinsecticide; liquid fermentation; dimorphism
ID LIQUID CULTURE PRODUCTION; PAECILOMYCES-FUMOSOROSEUS;
BIOLOGICAL-CONTROL; CERATOCYSTIS-ULMI; BLASTOSPORES; TOLERANCE;
VIRULENCE; NUTRITION
AB The entomopathogenic fungus Isaria fumosorosea is capable of dimorphic growth (hyphal or yeast-like) in submerged culture. Using 250-mL baffled flasks, culture volumes of 50, 100, 150, and 200 mL were grown in a shaker incubator at 350 rpm and 28 degrees C. Dissolved oxygen (DO) was continuously monitored using a non-invasive oxygen monitoring system. Culture volumes of 50 mL maintained DO concentrations above 10% throughout the 3-day growth period and accumulated biomass and produced blastospores more rapidly (1.2 x 10(9) blastospores mL(-1) in 2 days) than the other culture volumes tested. Dissolved oxygen was depleted in culture volumes of 100, 150, and 200 mL after 20.5, 16.8, and 13.5 h, respectively. The DO in 150 and 200 mL cultures remained exhausted (<3%) throughout the growth period resulting in significantly lower blastospore yields and increased hyphal growth. These results were used to establish oxygen levels (>20% DO) for I. fumosorosea growth in 100-L bioreactors resulting in blastospore production (1.1 x 10(9) blastospores mL(-1) in 2 days) comparable to highly aerated, low volume shake flask cultures. In addition, maintaining higher DO levels resulted in increased blastospore production by cultures of I. fumosorosea grown on low-cost nitrogen sources (cottonseed meal and soy flour) that previously elicited excessive hyphal growth. These studies showed that oxygen availability is essential for significant yeast-like growth by I. fumosorosea cultures and that continuous monitoring of oxygen concentrations in shake flask cultures can be used to establish aeration conditions for bioreactors.
C1 ARS, USDA, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
RP Jackson, MA (reprint author), ARS, USDA, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
EM mark.jackson@ars.usda.gov
NR 27
TC 4
Z9 4
U1 2
U2 20
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 1
BP 67
EP 79
DI 10.1080/09583157.2011.642339
PG 13
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960OE
UT WOS:000305397000006
ER
PT J
AU Manrique, V
Diaz, R
Pogue, MG
Vitorino, MD
Overholt, WA
AF Manrique, Veronica
Diaz, Rodrigo
Pogue, Michael G.
Vitorino, Marcelo D.
Overholt, William A.
TI Description and biology of Paectes longiformis (Lepidoptera:
Euteliidae), a new species from Brazil and potential biological control
agent of Brazilian peppertree in Florida
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE biological control; Paectes; Schinus terebinthifolius;
temperature-dependent development; cold tolerance
ID TEMPERATURE-DEPENDENT DEVELOPMENT; EUPHORBIA-ESULA GENOTYPE;
SCHINUS-TEREBINTHIFOLIUS; SPOTTED KNAPWEED; BIOCONTROL AGENT;
COLD-HARDINESS; ESTABLISHMENT SUCCESS; LYGODIUM-MICROPHYLLUM; NATURAL
ENEMIES; INVASIVE WEED
AB Brazilian peppertree, Schinus terebinthifolius Raddi (Anacardiaceae), native to South America, has invaded different habitats throughout south and central Florida. In recent surveys of natural enemies conducted in Salvador, Brazil (native range), a new species in the genus Paectes (Lepidoptera: Euteliidae) was found feeding on foliage of Brazilian peppertree. The objectives of this study were to describe the adult, larva and pupa and to examine the life history parameters of the new species, Paectes longiformis Pogue, a potential biocontrol agent of Brazilian peppertree. Survival and development of immature stages were examined at six constant temperatures (ranging from 16 to 34 degrees C). All stages of P. longiformis were exposed to 0 degrees C for 0.5, 1, 2, 4 and 8 d, and lethal times were calculated (Ltime(50), Ltime(90)). Paectes longiformis laid eggs singly on the plant foliage and completed five instars including a non-feeding pre-pupal stage that moved to the soil where it spun a cocoon. Complete development occurred at temperatures from 19 to 31 degrees C, the lower developmental threshold was estimated to be 11.5 degrees C and 454 degree-days were required to complete development from egg to adult. The lethal times at 0 degrees C (Ltime(50) = 1 d, Ltime(90) = 5 d) were used to construct isothermal lines to predict areas of establishment in the continental US. The predicted distribution includes the southeastern states including Florida, in addition to southern Texas and Arizona, and California. Overall, this study provides a species description, along with baseline information about the biology and temperature requirements of P. longiformis, a potential biological control agent of Brazilian peppertree.
C1 [Manrique, Veronica; Diaz, Rodrigo; Overholt, William A.] Univ Florida, Indian River Res & Educ Ctr, Ft Pierce, FL USA.
[Pogue, Michael G.] ARS, Systemat Entomol Lab, PSI, USDA,Smithsonian Inst, Washington, DC USA.
[Vitorino, Marcelo D.] Univ Blumenau, Forestry Master Program PPGEF, Blumenau, Brazil.
RP Manrique, V (reprint author), Univ Florida, Indian River Res & Educ Ctr, Ft Pierce, FL USA.
EM vero72@ufl.edu
RI Vitorino, Marcelo/C-1952-2013
FU Florida Fish and Wildlife Conservation Commission; Florida Department of
Agriculture and Consumer Services
FX The authors are grateful to Octavio Menocal, Katie Jordan and Todd
Condon (University of Florida) for their help during data collection and
Ben Anuforom (University of Florida) for helping with plant maintenance.
Special thanks to Dean Williams (Texas Christian University) for
conducting the genetic analysis of the Brazilian peppertree plants.
Taina Litwak (USDA, ARS, SEL, Washington, DC) provided the illustrations
and adult images and assembled the plates. We thank the following for
reviewing the manuscript: Peter J. Landolt (USDA, ARS, Yakima, WA),
Thomas J. Henry and Michael W. Gates (USDA, ARS, SEL, Washington, DC).
In addition, we thank the Instituto Brasileiro do Meio Ambiente e dos
Recursos Naturais Renovaveis (IBAMA) for providing the export permits.
Finally, we thank the Florida Fish and Wildlife Conservation Commission
and the Florida Department of Agriculture and Consumer Services for
providing financial support for these studies.
NR 57
TC 3
Z9 3
U1 0
U2 6
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 2
BP 163
EP 185
DI 10.1080/09583157.2011.647761
PG 23
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960OJ
UT WOS:000305397500004
ER
PT J
AU Jin, XX
Streett, D
Huang, YB
Ugine, T
AF Jin, Xixuan
Streett, Douglas
Huang, Yanbo
Ugine, Todd
TI Development of a novel bioassay system to assess the effectiveness of
entomopathogenic fungi against imported fire ants
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE spray tower; fire ant; Metarhizium brunneum; M. anisopliae; biopesticide
formulation
ID COMPATIBLE NONIONIC SURFACTANT; BALANCE HLB NUMBER; BEAUVERIA-BASSIANA;
METARHIZIUM-ANISOPLIAE; AERIAL CONIDIA; VIRULENCE; SUSCEPTIBILITY;
DIPTERA
AB A novel spray tower was developed for bioassay of biopesticide formulations. The virulence of Metarhizium brunneum and Metarhizium anisopliae ATCC 62176 was evaluated against imported fire ants. Both isolates were virulent but M. brunneum was more effective against imported fire ants. Results proved this apparatus was reliable, sensitive and accurate.
C1 [Jin, Xixuan] ARS, USDA, MSA, Biol Control Pests Res Unit,Natl Biol Control Lab, Stoneville, MS USA.
[Streett, Douglas] US Forest Serv, USDA, So Res Stn, Pineville, LA USA.
[Huang, Yanbo] ARS, USDA, MSA, Crop Prod Syst Res Unit, Stoneville, MS USA.
[Ugine, Todd] Cornell Univ, Dept Entomol, Coll Agr & Life Sci, Ithaca, NY 14853 USA.
RP Jin, XX (reprint author), ARS, USDA, MSA, Biol Control Pests Res Unit,Natl Biol Control Lab, Stoneville, MS USA.
EM xixuan.jin@ars.usda.gov
NR 25
TC 1
Z9 1
U1 0
U2 6
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 2
BP 233
EP 241
DI 10.1080/09583157.2011.648166
PG 9
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960OJ
UT WOS:000305397500008
ER
PT J
AU Smith, L
AF Smith, Lincoln
TI Host plant oviposition preference of Ceratapion basicorne (Coleoptera:
Apionidae), a potential biological control agent of yellow starthistle
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE host-plant specificity; biological control; weed; invasive plant; risk
assessment
ID CENTAUREA-SOLSTITIALIS ASTERACEAE; SPECIFICITY TEST; HISTORY; RANGE
AB Ceratapion basicorne is a weevil native to Europe and western Asia that is being evaluated as a prospective classical biological control agent of Centaurea solstitialis (yellow starthistle) in the United States. Choice oviposition experiments were conducted under laboratory conditions to help assess host-plant specificity of the insect. Mean oviposition rates were highest on C. solstitialis (66% of eggs, on a per replicate basis) followed by Centaurea cyanus (bachelor's button 22%), Centaurea melitensis (6%), Centaurea americana (1%), Saussurea americana (3%) and Carthamus tinctorius (safflower 2%). Adult feeding damage followed a similar pattern; however, there was less oviposition relative to the amount of adult feeding on each of the non-target species than on the target host plant, C. solstitialis. Thirteen safflower varieties were tested, and oviposition occurred on eight of them, at low rates. Adult feeding occurred on all safflower varieties tested, although at rates much lower than on yellow starthistle. The results were intermediate between those of previously reported no-choice laboratory and open field experiments. Overall, the combined results support the hypothesis that C. basicorne is not likely to attack any of the non-target plant species tested here except possibly C. cyanus and C. melitensis, which are both invasive alien plants.
C1 USDA ARS, Exot Invas Weeds Res Unit, Albany, CA USA.
RP Smith, L (reprint author), USDA ARS, Exot Invas Weeds Res Unit, Albany, CA USA.
EM link.smith@ars.usda.gov
NR 35
TC 5
Z9 5
U1 0
U2 18
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 4
BP 407
EP 418
DI 10.1080/09583157.2012.662476
PG 12
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960OV
UT WOS:000305398700003
ER
PT J
AU Mc Kay, F
Oleiro, M
Vitorino, MD
Wheeler, G
AF Mc Kay, Fernando
Oleiro, Marina
Vitorino, Marcelo Diniz
Wheeler, Gregory
TI The leafmining Leurocephala schinusae (Lepidoptera: Gracillariidae): not
suitable for the biological control of Schinus terebinthifolius
(Sapindales: Anacardiaceae) in continental USA
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE Brazilian pepper; biological weed control; host range; specificity
ID BRAZILIAN PEPPERTREE; CONTROL AGENT; HOST-RANGE; FLORIDA; RADDI;
THYSANOPTERA; CANDIDATE; INSECTS; GROWTH; DNA
AB The host range of Leurocephala schinusae Davis & Mc Kay (Lepidoptera: Gracillariidae) was studied to assess its suitability as a biological control agent of Schinus terebinthifolius Raddi (Anacardiaceae), a serious environmental weed in the USA and elsewhere in the world. The host range was determined in the laboratory with adult no-choice oviposition (Argentina and USA) and larval development tests (USA). Seventeen plant species in ten genera were selected based on taxonomic relatedness to S. terebinthifolius, economic importance, and availability. Additional information was obtained by sampling foliage of S. terebinthifolius and six other South American native Anacardiaceae species in north-eastern Argentina. In the laboratory, except for Lithrea molleoides and Spondias mombin, all of the tested species were accepted for oviposition with a marked preference for Rhus aromatica. Incipient mines successfully developed into complete mines, pupae and adults on R. aromatica, Rhus copallinum, Schinus molle, Schinus lentiscifolius and S. terebinthifolius. In the field, although L. schinusae showed a clear preference for S. terebinthifolius, the host range, as determined by samples of host use in the native range, included three other Schinus species (S. lentiscifolius, Schinus longifolius, Schinus weinmannifolius) and one Astronium species (Astronium balansae). In conclusion, L. schinusae will not be considered for the biological control of S. terebinthifolius in continental US. However, the utilisation of this species in other infested areas such as Hawaii and Australia should be further discussed.
C1 [Mc Kay, Fernando; Oleiro, Marina] USDA, Agr Res Serv, S Amer Biol Control Lab, Buenos Aires, DF, Argentina.
[Vitorino, Marcelo Diniz] Univ Reg Blumenau FURB, IPA, Blumenau, SC, Brazil.
[Wheeler, Gregory] ARS, USDA, Invas Plant Res Lab, Ft Lauderdale, FL USA.
RP Mc Kay, F (reprint author), USDA, Agr Res Serv, S Amer Biol Control Lab, Buenos Aires, DF, Argentina.
EM fmckay@speedy.com.ar
RI Vitorino, Marcelo/C-1952-2013
FU Florida Fish and Wildlife Federation, South Florida Water Management
District; USDA/ARS
FX We wish to thank K. Dyer, USDA/ARS/IPRL; M. Rouse and J. Rendon,
SCA/AmeriCorps for laboratory assistance; J. D. Munoz, Universidad
Nacional de Rosario, Argentina assisted in plant identification, and
insect specimens were identified by D. Davis, Smithsonian Institute,
Washington, DC. This manuscript was improved by the helpful comments of
B. Palmer, Biosecurity Queensland, Ecosciences Precinct, Australia; C.
Zachariades, ARC-PPRI, South Africa; and J. Briano, USDA/ARS/SABCL.
Voucher specimens are deposited in the National Museum of Natural
History, Smithsonian Institution, Washington, DC, the Departamento de
Zoologia, Universidade Federal do Parana, Curitiba, Brazil, and in the
Museo Argentino de Ciencias Naturales Bernardino Rivadavia, Buenos Aires
Argentina. Brazilian insect collections were conducted under the
Instituto Brasileiro do Meio Ambiente permit 09BR003939/DF issued to M.
V. Insects were introduced under quarantine with a USDA/APHIS permit
P526P-07-06609 issued to G. S. W. This project was partially funded by
Florida Fish and Wildlife Federation, South Florida Water Management
District, and USDA/ARS.
NR 44
TC 10
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U1 1
U2 13
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
EI 1360-0478
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 4
BP 477
EP 489
DI 10.1080/09583157.2012.664618
PG 13
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960OV
UT WOS:000305398700008
ER
PT J
AU Gao, YL
Reitz, SR
Wang, J
Xu, XN
Lei, ZR
AF Gao, Yulin
Reitz, Stuart R.
Wang, Jing
Xu, Xuenong
Lei, Zhongren
TI Potential of a strain of the entomopathogenic fungus Beauveria bassiana
(Hypocreales: Cordycipitaceae) as a biological control agent against
western flower thrips, Frankliniella occidentalis (Thysanoptera:
Thripidae)
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE Beauveria bassiana; Frankliniella occidentalis; broccoli; integrated
biological pest control
AB Five Beauveria bassiana strains were evaluated for control of western flower thrips. Strain RSB was the most virulent, causing 69-96% mortality at concentrations of 1 x 10(4)-1 x 10(7) conidia mL(-1), 10 days after inoculation of first instars. In greenhouse trials, RSB applied to broccoli foliage significantly reduced adult and larval populations.
C1 [Gao, Yulin; Wang, Jing; Xu, Xuenong; Lei, Zhongren] Chinese Acad Agr Sci, State Key Lab Biol Plant Dis & Insect Pests, Inst Plant Protect, Beijing 100193, Peoples R China.
[Reitz, Stuart R.] Agr Res Serv, Ctr Med Agr & Vet Entomol, USDA, Tallahassee, FL USA.
RP Lei, ZR (reprint author), Chinese Acad Agr Sci, State Key Lab Biol Plant Dis & Insect Pests, Inst Plant Protect, Beijing 100193, Peoples R China.
EM zrlei@ippcaas.cn
FU National Special Fund for Commonweal Agricultural Research [200903032];
China Agriculture Research System [CARS-25-B-07]
FX This research project was supported by the National Special Fund for the
Commonweal Agricultural Research (200903032) and the China Agriculture
Research System (CARS-25-B-07). We are grateful to Drs Marshall Johnson
(UCR), Jeff Lord (USDA-ARS-CGAHR) and Patricia Tamez-Guerra (Universidad
Autonoma de Nuevo Leon) for helpful comments on a previous version of
the manuscript. Mention of trade names or commercial products in this
publication is solely for the purpose of providing specific information
and does not imply recommendation or endorsement by the U.S. Department
of Agriculture.
NR 10
TC 9
Z9 10
U1 2
U2 13
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 4
BP 491
EP 495
DI 10.1080/09583157.2012.662478
PG 5
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960OV
UT WOS:000305398700009
ER
PT J
AU Rendon, J
Chawner, M
Dyer, K
Wheeler, GS
AF Rendon, J.
Chawner, M.
Dyer, K.
Wheeler, G. S.
TI Life history and host range of the leaf blotcher Eucosmophora
schinusivora: a candidate for biological control of Schinus
terebinthifolius in the USA
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE Anacardiaceae; Brazilian peppertree; Gracillariidae; invasive species;
weed biological control
ID GUNNIELLA BUSCK LEPIDOPTERA; MIMOSA-PIGRA L; BRAZILIAN PEPPERTREE;
CONTROL AGENT; SAPINDALES ANACARDIACEAE; GRACILLARIIDAE; SPECIFICITY;
THYSANOPTERA; SYSTEMATICS; MORPHOLOGY
AB The host range of Eucosmophora schinusivora Davis and Wheeler (Lepidoptera: Gracillariidae) was studied to assess its suitability as a biological control agent of Schinus terebinthifolius Raddi (Anacardiaceae), a serious environmental and agricultural weed in the USA and elsewhere in the world. The life history of this insect species and its host range were determined in the laboratory with adult no-choice oviposition and larval development tests. This species has five instars, the first three are sap-feeding miners and the last two are tissue feeding. Total development time was 31.7 days. To examine specificity of this species, 10 plant species in Anacardiaceae were selected based on taxonomic relatedness to S. terebinthifolius, economic importance, and availability. In the laboratory, except for Anacardium occidentale and Cotinus obovatus, all of the tested species were accepted for oviposition with a marked preference for the weed S. terebinthifolius, Schinus molle, Rhus copallinum, Rhus sandwicensis and Pistacia chinensis. Complete development, from egg to adult, was achieved only on S. terebinthifolius, S. molle, R. copallinum, P. chinensis and Metopium toxiferum. In conclusion, E. schinusivora will not be considered for the biological control of S. terebinthifolius in the continental USA. However, the utilisation of this species in other infested areas such as Hawai'i and Australia should be considered.
C1 [Rendon, J.; Chawner, M.; Dyer, K.; Wheeler, G. S.] ARS, USDA, Invas Plant Res Lab, Ft Lauderdale, FL USA.
[Rendon, J.; Chawner, M.] AmeriCorps, SCA, Ft Lauderdale, FL USA.
RP Wheeler, GS (reprint author), ARS, USDA, Invas Plant Res Lab, Ft Lauderdale, FL USA.
EM greg.wheeler@ars.usda.gov
FU Florida Fish and Wildlife Federation; South Florida Water Management
District; USDA/ARS
FX We wish to thank Dr D. R. Davis (Smithsonian Institution, Washington,
DC) for insect identifications, F. Mc Kay (USDA/ARS/SABCL, Buenos Aires,
Argentina), M. D. Vitorino, (Universidade Regional de Blumenau-FURB,
Brazil), J. Geiger, K. Paul and J. Fitzgerald, (USDA/ARS/IPRL) for
logistical, field and laboratory assistance. Brazilian insect
collections were conducted under the Instituto Brasileiro do Meio
Ambiente permit 09BR003939/DF. The insects were introduced under
APHIS/PPQ permit P526-07-06609 issued to GSW. Voucher specimens are
deposited in the National Museum of Natural History, Smithsonian
Institution, Washington, DC and the Departamento de Zoologia,
Universidade Federal do Parana, Curitiba, Brazil. This project was
partially funded by Florida Fish and Wildlife Federation, South Florida
Water Management District and USDA/ARS.
NR 41
TC 4
Z9 4
U1 0
U2 5
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
EI 1360-0478
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 6
BP 711
EP 722
DI 10.1080/09583157.2012.681627
PG 12
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960PI
UT WOS:000305400000007
ER
PT J
AU Gao, YL
Reitz, SR
Wang, J
Tamez-Guerra, P
Wang, ED
Xu, XN
Lei, ZR
AF Gao, Yulin
Reitz, Stuart R.
Wang, Jing
Tamez-Guerra, Patricia
Wang, Endong
Xu, Xuenong
Lei, Zhongren
TI Potential use of the fungus Beauveria bassiana against the western
flower thrips Frankliniella occidentalis without reducing the
effectiveness of its natural predator Orius sauteri (Hemiptera:
Anthocoridae)
SO BIOCONTROL SCIENCE AND TECHNOLOGY
LA English
DT Article
DE Beauveria bassiana; Orius sauteri; Frankliniella occidentalis;
integrated biological pest control
ID ENTOMOPATHOGENIC FUNGI; GREENHOUSE; PERGANDE; COMPATIBILITY;
BRONGNIARTII; THYSANOPTERA; PHYTOSEIIDAE; METARHIZIUM; COLEOPTERA;
EFFICACY
AB Orius sauteri (Poppius; Hemiptera: Anthocoridae) is an important predator of western flower thrips, Frankliniella occidentalis (Pergande; Thysanoptera: Thripidae). O. sauteri would be directly exposed to the entomopathogenic fungus Beauveria bassiana (Bals.) Vuillemin in the field should the fungus be used as a biopesticide. If the fungus were to negatively affect O. sauteri in agro-ecosystems, predation of F. occidentalis by O. sauteri may be limited. The present study was undertaken to evaluate the insecticidal activity of strain B. bassiana-RSB of B. bassiana, which is highly virulent to F. occidentalis, on the predator under laboratory conditions. Results showed that, regardless of the concentration applied to first instars, Bb-RSB was not insecticidal against O. sauteri, nor did direct applications affect the developmental rate of the predator. Significant differences in developmental rates and adult longevity were observed between O. sauteri that fed on Bb-RSB-infected F. occidentalis cadavers and those that fed on untreated thrips. Developmental time (from first instar to adult) increased from 0.3 to 0.7 days and adult longevity decreased by 0.8 to 1.2 days for predators fed thrips treated with low and high concentrations of strain Bb-RSB, respectively, compared with predators fed on untreated thrips. However, these differences were only 3-13% of mean values for the controls, suggesting that the effects of Bb-RSB on O. sauteri are relatively minor. These findings highlight the potential use of O. sauteri in combination with B. bassiana for the biocontrol of F. occidentalis, but field tests must be performed to confirm their compatible use.
C1 [Gao, Yulin; Wang, Jing; Wang, Endong; Xu, Xuenong; Lei, Zhongren] Chinese Acad Agr Sci, Inst Plant Protect, State Key Lab Biol Plant Dis & Insect Pests, Beijing 100193, Peoples R China.
[Reitz, Stuart R.] ARS, USDA, Ctr Med Agr & Vet Entomol, Tallahassee, FL USA.
[Tamez-Guerra, Patricia] Univ Autonoma Nuevo, Fac Ciencias Biol, Dept Microbiol & Inmunol, Leon, Nuevo Leon, Spain.
RP Lei, ZR (reprint author), Chinese Acad Agr Sci, Inst Plant Protect, State Key Lab Biol Plant Dis & Insect Pests, Beijing 100193, Peoples R China.
EM zrlei@ippcaas.cn
FU Special Fund for Agro-Scientific Research in the Public Interest
[200903032]; China Agriculture Research System [CARS-25-B-07]
FX This research project was supported by the Special Fund for
Agro-Scientific Research in the Public Interest (200903032) and The
China Agriculture Research System (CARS-25-B-07). Mention of trade names
or commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the U.S. Department of Agriculture.
NR 28
TC 8
Z9 8
U1 2
U2 22
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0958-3157
J9 BIOCONTROL SCI TECHN
JI Biocontrol Sci. Technol.
PY 2012
VL 22
IS 7
BP 803
EP 812
DI 10.1080/09583157.2012.691158
PG 10
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 960PO
UT WOS:000305400600006
ER
PT J
AU Brandeis, TJ
Randolph, KC
AF Brandeis, Thomas J.
Randolph, KaDonna C.
TI Modeling Caribbean tree heights and crown widths
SO CARIBBEAN JOURNAL OF SCIENCE
LA English
DT Article
DE Allometric models; secondary forest; Puerto Rico; US Virgin Islands;
linear and nonlinear regression
ID DIAMETER EQUATIONS; AMAZON FOREST; GROWTH; STANDS
AB Regression models to predict total tree height and maximum crown radius as a function of diameter at breast height were developed for Caribbean trees using data collected by the U.S. Forest Service in the Commonwealth of Puerto Rico and Territory of the U.S. Virgin Islands. Nonlinear models predicting height fit the data well with an overall pseudo-R-2 = 0.9220, as did models of height to diameter by Holdridge life zone and by the most frequently encountered species. The linear model predicting maximum crown radius for all trees combined fit the data poorly (R-2 = 0.3478). Crown model fits showed only moderate improvements when the data were modeled by species, crown class, and inventory measurement protocol, highlighting the variability of Caribbean forest tree crowns within and between species. Height models presented here will be useful for applications such as growth and yield simulation, forest health monitoring, and wildlife habitat modeling, but the crown radius prediction models only should be applied with an understanding of their limitations.
C1 [Brandeis, Thomas J.; Randolph, KaDonna C.] US Forest Serv, So Res Stn, USDA, Knoxville, TN 37919 USA.
RP Brandeis, TJ (reprint author), US Forest Serv, So Res Stn, USDA, 4700 Old Kingston Pike, Knoxville, TN 37919 USA.
EM tjbrandeis@fs.fed.us
NR 33
TC 0
Z9 0
U1 0
U2 0
PU UNIV PUERTO RICO,
PI MAYAGUEZ
PA COLLEGE ARTS SCIENCES, MAYAGUEZ, PR 00680 USA
SN 0008-6452
J9 CARIBB J SCI
JI Caribb. J. Sci.
PY 2012
VL 46
IS 2-3
BP 176
EP 185
PG 10
WC Biodiversity Conservation
SC Biodiversity & Conservation
GA 954VT
UT WOS:000304976800006
ER
PT J
AU Medina, E
Cuevas, E
Molina, S
Luco, AE
Ramos, O
AF Medina, Ernesto
Cuevas, Elvira
Molina, Sandra
Luco, Ariel E.
Ramos, Olga
TI Structural variability and species diversity of a dwarf Caribbean dry
forest
SO CARIBBEAN JOURNAL OF SCIENCE
LA English
DT Article
DE coastal dry forests; community structure; species diversity; importance
value; limestone substrate; multistemmed trees; plasticity; species
dominance
ID PUERTO-RICO
AB Low stature woody vegetation of the south-west coast of Puerto Rico grows on a rocky calcareous substrate where plants can only root in holes, cracks, and crevices accumulating water and sediments that allow seed germination and seedling development. Being in a coastal location these communities are influenced by steady onshore winds, high solar radiation, and salt spray. We studied dwarfed forest communities located at the southern limit of the Guanica State Forest, Puerto Rico, that have a well known floristic composition, but with little information on their organization and heterogeneity. We quantified the species composition of vegetation plots located along the southern coastline and compared their structure and diversity with those of dry forests on neighboring hills. The hypothesis was that forest structural development was negatively associated with proximity to the coast line and altitude above sea level. Species richness of the coastal dwarf forest area was similar to that of inland semi deciduous forest plots with which it shares at least 15 woody species. In addition, it contains a number of species resistant to salt spray and possibly brackish water, such as Conocarpus erectus, Strumpfia maritima, and Coccoloba uvifera. The average canopy height of the coastal vegetation increases from 0.4 to 2.3 m between 0 to 150 m from the coastline and 7 to 19 m elevation above sea level. Within this spatial range the predominant bearing of the canopy changes from a SE-NW direction to a SW-NE direction revealing the influence of onshore winds in combination with salt spray. The dominant woody species occur as multistemmed individuals, a characteristic probably associated to occasional heavy winds and recurrent drought that impairs shoot apical dominance. Floristic and structure comparisons with mature forest plots located between 25 and 150 m altitude showed that the coastal dwarf vegetation has a more even species dominance distribution associated with the discontinuity of substrate available for establishment.
C1 [Medina, Ernesto; Luco, Ariel E.; Ramos, Olga] US Forest Serv, Int Inst Trop Forestry, USDA, Jardin Bot Sur, Rio Piedras, PR 00926 USA.
[Medina, Ernesto] Inst Venezolano Invest Cient, Ctr Ecol, Caracas 1020A, Venezuela.
[Cuevas, Elvira] Univ Puerto Rico, Dept Biol, Res Fellow Ctr Appl Ecol & Conservat, Rio Piedras, PR 00931 USA.
[Molina, Sandra] Pontificial Catholic Univ Puerto Rico, Dept Biol, Ponce, PR 00717 USA.
RP Medina, E (reprint author), US Forest Serv, Int Inst Trop Forestry, USDA, Jardin Bot Sur, 1201 Calle Ceiba, Rio Piedras, PR 00926 USA.
EM medinage@gmail.com
NR 28
TC 1
Z9 1
U1 0
U2 11
PU UNIV PUERTO RICO,
PI MAYAGUEZ
PA COLLEGE ARTS SCIENCES, MAYAGUEZ, PR 00680 USA
SN 0008-6452
J9 CARIBB J SCI
JI Caribb. J. Sci.
PY 2012
VL 46
IS 2-3
BP 203
EP 215
PG 13
WC Biodiversity Conservation
SC Biodiversity & Conservation
GA 954VT
UT WOS:000304976800009
ER
PT J
AU Feng, SP
Wang, XJ
Zhang, XY
Dang, PM
Holbrook, CC
Culbreath, AK
Wu, YT
Guo, BZ
AF Feng, Suping
Wang, Xingjun
Zhang, Xinyou
Dang, Phat M.
Holbrook, C. Corley
Culbreath, Albert K.
Wu, Yaoting
Guo, Baozhu
TI Peanut (Arachis hypogaea) Expressed Sequence Tag Project: Progress and
Application
SO COMPARATIVE AND FUNCTIONAL GENOMICS
LA English
DT Review
ID EST-SSR MARKERS; GENETIC-LINKAGE MAP; CULTIVATED PEANUT; BOTANICAL
VARIETIES; DRAFT SEQUENCE; L.; GENOME; TRANSFERABILITY; ANNOTATION;
RESISTANCE
AB Many plant ESTs have been sequenced as an alternative to whole genome sequences, including peanut because of the genome size and complexity. The US peanut research community had the historic 2004 Atlanta Genomics Workshop and named the EST project as a main priority. As of August 2011, the peanut research community had deposited 252,832 ESTs in the public NCBI EST database, and this resource has been providing the community valuable tools and core foundations for various genome-scale experiments before the whole genome sequencing project. These EST resources have been used for marker development, gene cloning, microarray gene expression and genetic map construction. Certainly, the peanut EST sequence resources have been shown to have a wide range of applications and accomplished its essential role at the time of need. Then the EST project contributes to the second historic event, the Peanut Genome Project 2010 Inaugural Meeting also held in Atlanta where it was decided to sequence the entire peanut genome. After the completion of peanut whole genome sequencing, ESTs or transcriptome will continue to play an important role to fill in knowledge gaps, to identify particular genes and to explore gene function.
C1 [Feng, Suping; Culbreath, Albert K.; Guo, Baozhu] Univ Georgia, Dept Plant Pathol, Tifton, GA 31793 USA.
[Feng, Suping; Wu, Yaoting] Qiongzhou Univ, Coll Biosci & Biotechnol, Sanya, Peoples R China.
[Wang, Xingjun] Shandong Acad Agr Sci, High Tech Res Ctr, Jinan, Peoples R China.
[Zhang, Xinyou] Henan Acad Agr Sci, Zhengzhou, Peoples R China.
[Dang, Phat M.] USDA ARS, Natl Peanut Res Lab, Dawson, GA 31742 USA.
[Guo, Baozhu] USDA ARS, Crop Protect & Management Res Unit, Tifton, GA USA.
[Holbrook, C. Corley] USDA ARS, Crop Genet & Breeding Res Unit, Tifton, GA 31793 USA.
RP Guo, BZ (reprint author), Univ Georgia, Dept Plant Pathol, Tifton, GA 31793 USA.
EM baozhu.guo@ars.usda.gov
FU USDA Agricultural Research Service; Georgia Agricultural Commodity
Commission for Peanut and Peanut Foundation
FX The authors thank Billy Wilson for technical assistance in the field and
the laboratory. This research was partially supported by funds provided
by the USDA Agricultural Research Service and the Georgia Agricultural
Commodity Commission for Peanut and Peanut Foundation. Mention of trade
names or commercial products in this publication is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the US Department of Agriculture. USDA
is an equal opportunity provider and employer.
NR 80
TC 10
Z9 11
U1 0
U2 7
PU HINDAWI PUBLISHING CORPORATION
PI NEW YORK
PA 410 PARK AVENUE, 15TH FLOOR, #287 PMB, NEW YORK, NY 10022 USA
SN 1531-6912
J9 COMP FUNCT GENOM
JI Compar. Funct. Genom.
PY 2012
AR 373768
DI 10.1155/2012/373768
PG 9
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Genetics & Heredity
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Genetics & Heredity
GA 963KO
UT WOS:000305619600001
ER
PT J
AU Hameed, U
Pan, YB
Muhammad, K
Afghan, S
Iqbal, J
AF Hameed, U.
Pan, Y. -B.
Muhammad, K.
Afghan, S.
Iqbal, J.
TI Use of simple sequence repeat markers for DNA fingerprinting and
diversity analysis of sugarcane (Saccharum spp) cultivars resistant and
susceptible to red rot
SO GENETICS AND MOLECULAR RESEARCH
LA English
DT Article
DE Sugarcane; Simple sequence repeat; Genetic identity; Polymerase chain
reaction
ID MICROSATELLITE MARKERS; MOLECULAR DIVERSITY; GENOME STRUCTURE; SPP.;
MAP; VARIETIES; GERMPLASM; LINKAGE; MAIZE
AB Red rod is an economically important disease of sugarcane caused by the fungus Colletotrichum falcatum. We used a simple sequence repeat (SSR)-based marker system to identify and analyze genetic relationships of red rot resistant and susceptible sugarcane cultivars grown in Pakistan. Twenty-one highly polymorphic SSR markers were used for DNA fingerprinting and genetic diversity analysis of 20 sugarcane cultivars. These SSR markers were found to be highly robust; we identified 144 alleles, with 3-11 alleles per marker and a mean of 6.8. Three SSR markers were able to identify all 20 cultivars. DNAMAN (R)-generated homology tree was used to analyze genetic diversity among these cultivars; all cultivars shared 58% or more similarity. We correlated polymorphism information content and resolving power values with marker effectiveness in the process of sugarcane cultivar identification. We concluded that a small number of SSR-derived DNA markers will allow breeders to identify red rot resistant and susceptible cultivars.
C1 [Hameed, U.; Muhammad, K.; Iqbal, J.] Univ Punjab, Sch Biol Sci, Lahore, Pakistan.
[Pan, Y. -B.] USDA, Sugarcane Res Lab, Agr Res Serv, Houma, LA USA.
[Afghan, S.] Shakarganj Sugar Res Inst, Jhang, Pakistan.
RP Iqbal, J (reprint author), Univ Punjab, Sch Biol Sci, Lahore, Pakistan.
EM yongbao.pan@ars.usda.gov; javediqbal1942@yahoo.com
RI Sangue, Inct/I-1919-2013; Iqbal, Javed/H-9604-2015
NR 36
TC 5
Z9 5
U1 0
U2 15
PU FUNPEC-EDITORA
PI RIBEIRAO PRETO
PA RUA HUDSON 655, JARDIM CANADA, RIBEIRAO PRETO, SP, BRAZIL
SN 1676-5680
J9 GENET MOL RES
JI Genet. Mol. Res.
PY 2012
VL 11
IS 2
BP 1195
EP 1204
DI 10.4238/2012.May.8.1
PG 10
WC Biochemistry & Molecular Biology; Genetics & Heredity
SC Biochemistry & Molecular Biology; Genetics & Heredity
GA 962DL
UT WOS:000305519600041
PM 22614346
ER
PT J
AU Lin, H
Islam, MS
Ramming, DW
AF Lin, H.
Islam, M. S.
Ramming, D. W.
TI Genome-wide identification and characterization of simple sequence
repeat loci in grape phylloxera, Daktulosphaira vitifoliae
SO GENETICS AND MOLECULAR RESEARCH
LA English
DT Article
DE Grape phylloxera; Simple sequence repeat marker; Genetic diversity;
Population genetics
ID DNA
AB A genome-wide sequence search was conducted to identify simple sequence repeat (SSR) loci in phylloxera, Daktulosphaira vitifoliae, a major grape pest throughout the world. Collectively, 1524 SSR loci containing mono-, di-, tri-, tetra-, penta-, and hexa-nucleotide motifs were identified. Among them, trinucleotide repeats were the most abundant in the phylloxera genome (34.4%), followed by hexanucleotide (20.4%) and dinucleotide (19.6%) repeats. Mono-, tetra-and pentanucleotide repeats were found at a frequency of 1.3, 11.2 and 12.9%, respectively. The abundance and inherent variations in SSRs provide valuable information for developing molecular markers. The high levels of allelic variation and codominant features of SSRs make this marker system a useful tool for genotyping, diversity assessment and population genetic studies of reproductive characteristics of phylloxera in agricultural and natural populations.
C1 [Lin, H.; Islam, M. S.; Ramming, D. W.] USDA ARS, Crop Dis Pests & Genet Res Unit, Parlier, CA USA.
[Islam, M. S.] Univ Calif Davis, Dept Viticulture & Enol, Davis, CA 95616 USA.
RP Lin, H (reprint author), USDA ARS, Crop Dis Pests & Genet Res Unit, Parlier, CA USA.
EM Hong.Lin@ars.usda.gov
RI Sangue, Inct/I-1919-2013
FU Viticulture Consortium West
FX We thank Karl Lund of UCD for providing phylloxera samples. Research
supported in part by the Viticulture Consortium West. Trade names or
commercial products in this publication are mentioned solely for the
purpose of providing specific information, and does not imply
recommendation or endorsement by the United States Department of
Agriculture.
NR 8
TC 1
Z9 1
U1 0
U2 7
PU FUNPEC-EDITORA
PI RIBEIRAO PRETO
PA RUA HUDSON 655, JARDIM CANADA, RIBEIRAO PRETO, SP, BRAZIL
SN 1676-5680
J9 GENET MOL RES
JI Genet. Mol. Res.
PY 2012
VL 11
IS 2
BP 1409
EP 1416
DI 10.4238/2012.May.15.11
PG 8
WC Biochemistry & Molecular Biology; Genetics & Heredity
SC Biochemistry & Molecular Biology; Genetics & Heredity
GA 962DL
UT WOS:000305519600065
PM 22653587
ER
PT J
AU Kohnke, T
Lin, A
Elder, T
Theliander, H
Ragauskas, AJ
AF Koehnke, Tobias
Lin, Angela
Elder, Thomas
Theliander, Hans
Ragauskas, Arthur J.
TI Nanoreinforced xylan-cellulose composite foams by freeze-casting
SO GREEN CHEMISTRY
LA English
DT Article
ID ADSORPTION CHARACTERISTICS; HEMICELLULOSES; BIOMATERIALS; SCAFFOLDS;
PATH
AB Structured biofoams have been prepared from the readily available renewable biopolymer xylan by employing an ice-templating technique, where the pore morphology of the material can be controlled by the solidification conditions and the molecular structure of the polysaccharide. Furthermore, reinforcement of these biodegradable foams using cellulose nanocrystals shows potential for strongly improved mechanical properties.
C1 [Koehnke, Tobias; Ragauskas, Arthur J.] Georgia Inst Technol, Inst Paper Sci & Technol, Atlanta, GA 30332 USA.
[Koehnke, Tobias; Theliander, Hans] Chalmers, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden.
[Lin, Angela] Georgia Inst Technol, Woodruff Sch Mech Engn, Atlanta, GA 30332 USA.
[Elder, Thomas] USDA Forest Serv, So Res Stn, Pineville, LA 71360 USA.
RP Kohnke, T (reprint author), Georgia Inst Technol, Inst Paper Sci & Technol, Atlanta, GA 30332 USA.
EM art.ragauskas@ipst.gatech.edu
OI Kohnke, Tobias/0000-0003-1259-6414; Ragauskas,
Arthur/0000-0002-3536-554X
FU Gunnar Nicholson Foundation
FX The authors gratefully acknowledge financial support from the Gunnar
Nicholson Foundation.
NR 25
TC 24
Z9 24
U1 8
U2 49
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
ENGLAND
SN 1463-9262
J9 GREEN CHEM
JI Green Chem.
PY 2012
VL 14
IS 7
BP 1864
EP 1869
DI 10.1039/c2gc35413f
PG 6
WC Chemistry, Multidisciplinary; GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY
SC Chemistry; Science & Technology - Other Topics
GA 963NI
UT WOS:000305627500005
ER
PT J
AU Khoshgoftarmanesh, AH
Eshghizadeh, HR
Chaney, RL
AF Khoshgoftarmanesh, A. H.
Eshghizadeh, H. R.
Chaney, R. L.
TI USING ACID-WASHED SHREDDED WASTE-TIRE RUBBER IN SOILLESS MEDIA FOR
TOMATO PRODUCTION
SO JOURNAL OF PLANT NUTRITION
LA English
DT Article
DE Lycopersicon esculentum; soilless culture; substrate; tire rubber
ID GROWTH
AB 'Cerasiforne' tomato (Lycopersicon esculentum Mill.) was grown in soilless potting media contained different substrate formulas including 25:25:50 volume ratio of acid-washed (AWR) or non-washed shredded rubber (NAWR):vermiculite or zeolite:perlite. Additionally, plants were grown in a peat: perlite substrate. Plants grown in media containing AWR had greater root and shoot dry weight and fruit production than those grown in the NAWR media or the peat: perlite substrate. Fruit zinc (Zn) and iron (Fe) concentration of plants grown in AWR-containing media was significantly lower than those grown in NAWR-containing media. Plants grown in the presence of waste rubber accumulated greater Zn in their shoots compared to those grown in the peat: perlite media. Acid washing of rubber significantly reduced shoot Zn concentration. Shredded waste rubber might be used as a component of container media in production of hydroponically-grown tomato; however, acid-washing of rubber is required to prevent potential Zn toxicity for plant.
C1 [Khoshgoftarmanesh, A. H.] Isfahan Univ Technol, Dept Soil Sci, Coll Agr, Esfahan 84154, Iran.
[Eshghizadeh, H. R.] Isfahan Univ Technol, Soilless Culture Res Ctr, Esfahan 84154, Iran.
[Chaney, R. L.] USDA ARS, Environm Management & Byprod Utilizat Lab, Beltsville, MD USA.
RP Khoshgoftarmanesh, AH (reprint author), Isfahan Univ Technol, Dept Soil Sci, Coll Agr, Esfahan 84154, Iran.
EM amirhkhosh@cc.iut.ac.ir
NR 8
TC 1
Z9 1
U1 1
U2 6
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0190-4167
J9 J PLANT NUTR
JI J. Plant Nutr.
PY 2012
VL 35
IS 9
BP 1341
EP 1348
DI 10.1080/01904167.2012.684126
PG 8
WC Plant Sciences
SC Plant Sciences
GA 959XN
UT WOS:000305351600006
ER
PT J
AU Joshi, H
Moser, BR
Walker, T
AF Joshi, Hem
Moser, Bryan R.
Walker, Terry
TI Mixed Alkyl Esters from Cottonseed Oil: Improved Biodiesel Properties
and Blends with Diesel Fuel
SO JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY
LA English
DT Article
DE Alkyl esters; Biodiesel; Cloud point; Cottonseed oil; Diesel fuel; Fatty
acid methyl esters; Fuel properties; Kinematic viscosity; Pour point;
Transesterification
ID FATTY ESTERS; SOYBEAN OIL; CANOLA OIL; SEED OIL; TRANSESTERIFICATION;
FEEDSTOCKS; ADDITIVES; ETHANOL
AB Transesterification of refined cottonseed oil (CSO) was carried out with methanol, ethanol, 1-butanol, and various mixtures of these alcohols to produce biodiesel. In the mixed alcohol transesterifications, formation of methyl esters was favored over ethyl and butyl esters. The influence of ester head group on fuel properties was determined. Specifically, cold flow properties, lubricity, and energy content improved in the order: CSO butyl esters (CSBE, best) > ethyl esters (CSEE) > methyl esters (CSME). Higher kinematic viscosities (KVs) as well as lower iodine values (IVs) and wear scars were observed with larger ester head groups. Blends of CSME, CSEE and CSBE exhibited properties intermediate to the neat esters. All ester samples were within the limits prescribed in ASTM D6751 and EN 14214 for cetane number, acid value (AV), glycerol (free and total) content, sulfur, and phosphorous. Also examined was the influence of blending alkyl esters with petrodiesel. All blends exhibited improved cold flow properties versus unblended alkyl esters. Enhanced lubricity was observed after blending. With increasing content of biodiesel, higher KVs and lower energy contents were observed. Finally, all blends were within the limits specified in ASTM D975 and D7467 for AV, KV and sulfur.
C1 [Joshi, Hem; Walker, Terry] Clemson Univ, Clemson, SC 29634 USA.
[Moser, Bryan R.] ARS, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
RP Walker, T (reprint author), Clemson Univ, 114 Biosyst Res Complex, Clemson, SC 29634 USA.
EM walker4@clemson.edu
FU USDA-ARS Southwestern Cotton Ginning Research Laboratory (SWCGRL; Las
Cruces, NM, USA); Eco-Sol, LLC (Tucson, AZ, USA); Cotton, Inc. (Cary,
NC, USA)
FX The authors acknowledge Benetria N. Banks and Erin L. Walter for
excellent technical assistance. The authors also thank USDA-ARS
Southwestern Cotton Ginning Research Laboratory (SWCGRL; Las Cruces, NM,
USA) in Cooperative 269 R&D Agreement with Eco-Sol, LLC (Tucson, AZ,
USA) for their support and supply of CSO. Lastly, Cotton, Inc. (Cary,
NC, USA) is acknowledged for funding a portion of this project.
NR 33
TC 5
Z9 7
U1 1
U2 24
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0003-021X
J9 J AM OIL CHEM SOC
JI J. Am. Oil Chem. Soc.
PD JAN
PY 2012
VL 89
IS 1
BP 145
EP 153
DI 10.1007/s11746-011-1891-z
PG 9
WC Chemistry, Applied; Food Science & Technology
SC Chemistry; Food Science & Technology
GA 959CV
UT WOS:000305289900016
ER
PT J
AU Hojilla-Evangelista, MP
AF Hojilla-Evangelista, Mila P.
TI Extraction and Functional Properties of Non-Zein Proteins in Corn Germ
from Wet-Milling
SO JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY
LA English
DT Article
DE Corn; Corn germ; Maize; Protein extraction; Protein functionality
ID WATER-RETENTION; SOY PROTEINS; MODEL SYSTEM; FLOUR; ULTRAFILTRATION;
SOLUBILITY; CAPACITY; ISOLATE
AB This study was conducted to evaluate the extractability of wet-milled corn germ protein, characterize the recovered protein and identify its potential applications. Protein was extracted from both wet germ and finished (dried) germ using 0.1 M NaCl as solvent. The method involved homogenization, stirring, centrifugation, dialysis and freeze-drying. Factors evaluated were temperature (40, 50, or 60 degrees C) and the presence of reducing or denaturing agents. The recovered protein was analyzed for proximate composition and functional properties. Protein recovery was greater from wet germ. For both germ samples, protein recovery was not improved by using higher temperatures; thus, subsequent extractions were done at 40 degrees C. Addition of 2% SDS and 1% beta-mercaptoethanol to the solvent nearly doubled protein yield; but, SDS-PAGE indicated some protein denaturation. The recovered freeze-dried proteins from both germ samples were least soluble at pH 2.0-4.0, but solubility increased at higher pH values. Wet germ protein extract was more soluble than finished germ protein at all pH values; however, the finished germ protein showed much better foaming and emulsifying properties and water-holding capacity.
C1 ARS, Plant Polymer Res Unit, NCAUR, USDA, Peoria, IL 61604 USA.
RP Hojilla-Evangelista, MP (reprint author), ARS, Plant Polymer Res Unit, NCAUR, USDA, 1815 N Univ St, Peoria, IL 61604 USA.
EM Mila.HojillaEvangelista@ars.usda.gov
NR 31
TC 4
Z9 5
U1 1
U2 27
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0003-021X
J9 J AM OIL CHEM SOC
JI J. Am. Oil Chem. Soc.
PD JAN
PY 2012
VL 89
IS 1
BP 167
EP 174
DI 10.1007/s11746-011-1881-1
PG 8
WC Chemistry, Applied; Food Science & Technology
SC Chemistry; Food Science & Technology
GA 959CV
UT WOS:000305289900018
ER
PT J
AU Kim, S
Srygley, RB
Lee, JY
Lee, SI
Choe, JC
AF Kim, Sanha
Srygley, Robert B.
Lee, June Yong
Lee, Sang-im
Choe, Jae C.
TI URBAN AND NATURAL COMPONENTS OF KOREAN MAGPIE (PICA PICA SERICEA)
TERRITORIES AND THEIR EFFECTS ON PREY DENSITY
SO POLISH JOURNAL OF ECOLOGY
LA English
DT Article
DE urbanization; land use; Korean magpie; Corvidae; territory size; prey
density; habitat structure
ID AVIAN SPECIES-DIVERSITY; NEST PREDATION; SIZE; BIRDS; HABITAT;
PERSPECTIVE; LANDSCAPE; QUALITY
AB Urban landscapes have a negative impact on bird species diversity, yet particular species thrive in urban communities. Like many other corvids, the Korean magpie is a successful colonizer of urban environments. On the semi-urban campus of Seoul National University in Korea, we investigated whether magpies adjust territory size with building area and secondarily, whether they use vegetation and artificial components of their territory as indicators of prey density. We measured territorial areas and divided these into vegetation and artificial areas, distinguishing building area as a separate feature. We sampled prey density on each territory during the nestling stage. Territory size increased with the square root of building area (SRBA). As the length of building perimeter also increases with SRBA, we conclude that territory size was proportional to building perimeter. Prey density decreased with SRBA indicating that buildings had a negative impact on prey. Breeding success was also negatively related to SRBA. We suggest that magpies adjusted territory size according to the length of building perimeter clue to a decline in prey density. As prey density declined, artificial pavement area was added to include open trash bins, which increase the availability of anthropogenic refuse such as discarded food. Vegetation area declined as prey density increased, but changes in vegetation area were minor and had little impact on prey availability measured at ground level. Structural cues were not used to adjust vegetation area, and artificial structural cues were not used to adjust territorial size over direct monitoring of prey density.
C1 [Kim, Sanha; Lee, June Yong; Choe, Jae C.] Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea.
[Srygley, Robert B.] ARS, USDA, No Plains Res Lab, Sidney, MT 59270 USA.
[Lee, Sang-im] Seoul Natl Univ, Inst Adv Machinery & Design, Seoul 151742, South Korea.
[Choe, Jae C.] Ewha Womans Univ, Div EcoSci, Seoul 120750, South Korea.
RP Choe, JC (reprint author), Seoul Natl Univ, Sch Biol Sci, San 56-1, Seoul 151742, South Korea.
EM jaechoe@ewha.ac.kr
FU Korean Science and Engineering Foundation; Brain Korea 21 Research
Fellowship from the Ministry of Education and Human Resources
Development Ewha Global Top 5 Grant of Ewha Womans University; Ministry
of Commerce, Industry and Energy
FX We thank the magpie team in the Laboratory of Behavior and Ecology at
SNU for contributing breeding data and comments on the manuscript. The
Korean Science and Engineering Foundation supported R.B.S. with a Brain
Pool Professorship. This study was funded by a Brain Korea 21 Research
Fellowship from the Ministry of Education and Human Resources
Development Ewha Global Top 5 Grant 2011 of Ewha Womans University and a
grant from the Ministry of Commerce, Industry and Energy.
NR 32
TC 0
Z9 1
U1 1
U2 8
PU POLISH ACAD SCIENCES INST ECOLOGY
PI LOMIANKI
PA DZIEKANOW LESNY NEAR WARSAW, 05-092 LOMIANKI, POLAND
SN 1505-2249
J9 POL J ECOL
JI Pol. J. Ecol.
PY 2012
VL 60
IS 2
BP 407
EP 417
PG 11
WC Ecology
SC Environmental Sciences & Ecology
GA 960FO
UT WOS:000305373600016
ER
PT J
AU Wheeler, QD
Knapp, S
Stevenson, DW
Stevenson, J
Blum, SD
Boom, BM
Borisy, GG
Buizer, JL
De Carvalho, MR
Cibrian, A
Donoghue, MJ
Doyle, V
Gerson, EM
Graham, CH
Graves, P
Graves, SJ
Guralnick, RP
Hamilton, AL
Hanken, J
Law, W
Lipscomb, DL
Lovejoy, TE
Miller, H
Miller, JS
Naeem, S
Novacek, MJ
Page, LM
Platnick, NI
Porter-Morgan, H
Raven, PH
Solis, MA
Valdecasas, AG
Van Der Leeuw, S
Vasco, A
Vermeulen, N
Vogel, J
Walls, RL
Wilson, EO
Woolley, JB
AF Wheeler, Q. D.
Knapp, S.
Stevenson, D. W.
Stevenson, J.
Blum, S. D.
Boom, B. M.
Borisy, G. G.
Buizer, J. L.
De Carvalho, M. R.
Cibrian, A.
Donoghue, M. J.
Doyle, V.
Gerson, E. M.
Graham, C. H.
Graves, P.
Graves, S. J.
Guralnick, R. P.
Hamilton, A. L.
Hanken, J.
Law, W.
Lipscomb, D. L.
Lovejoy, T. E.
Miller, H.
Miller, J. S.
Naeem, S.
Novacek, M. J.
Page, L. M.
Platnick, N. I.
Porter-Morgan, H.
Raven, P. H.
Solis, M. A.
Valdecasas, A. G.
Van Der Leeuw, S.
Vasco, A.
Vermeulen, N.
Vogel, J.
Walls, R. L.
Wilson, E. O.
Woolley, J. B.
TI Mapping the biosphere: exploring species to understand the origin,
organization and sustainability of biodiversity
SO SYSTEMATICS AND BIODIVERSITY
LA English
DT Article
DE biodiversity; bioinformatics; biomimicry; biosphere; conservation;
cyberinfrastructure; ecology; evolution; international collaboration;
organization of science; origins; species; sustainability; systematics;
taxonomy; team work
ID SYSTEMATIC BIOLOGY; RED SWEAT; TAXONOMY; LIFE; CONSERVATION; TREE;
INFRASTRUCTURE; HIPPOPOTAMUS; INFORMATION; CHALLENGES
AB The time is ripe for a comprehensive mission to explore and document Earth's species. This calls for a campaign to educate and inspire the next generation of professional and citizen species explorers, investments in cyber-infrastructure and collections to meet the unique needs of the producers and consumers of taxonomic information, and the formation and coordination of a multi-institutional, international, transdisciplinary community of researchers, scholars and engineers with the shared objective of creating a comprehensive inventory of species and detailed map of the biosphere. We conclude that an ambitious goal to describe 10 million species in less than 50 years is attainable based on the strength of 250 years of progress, worldwide collections, existing experts, technological innovation and collaborative teamwork. Existing digitization projects are overcoming obstacles of the past, facilitating collaboration and mobilizing literature, data, images and specimens through cyber technologies. Charting the biosphere is enormously complex, yet necessary expertise can be found through partnerships with engineers, information scientists, sociologists, ecologists, climate scientists, conservation biologists, industrial project managers and taxon specialists, from agrostologists to zoophytologists. Benefits to society of the proposed mission would be profound, immediate and enduring, from detection of early responses of flora and fauna to climate change to opening access to evolutionary designs for solutions to countless practical problems. The impacts on the biodiversity, environmental and evolutionary sciences would be transformative, from ecosystem models calibrated in detail to comprehensive understanding of the origin and evolution of life over its 3.8 billion year history. The resultant cyber-enabled taxonomy, or cybertaxonomy, would open access to biodiversity data to developing nations, assure access to reliable data about species, and change how scientists and citizens alike access, use and think about biological diversity information.
C1 [Wheeler, Q. D.; Hamilton, A. L.; Van Der Leeuw, S.] Arizona State Univ, Tempe, AZ 85282 USA.
[Knapp, S.] Nat Hist Museum, London SW7 5BD, England.
[Stevenson, D. W.; Stevenson, J.; Boom, B. M.; Cibrian, A.; Doyle, V.; Law, W.; Miller, J. S.; Porter-Morgan, H.; Vasco, A.; Walls, R. L.] New York Bot Garden, New York, NY USA.
[Blum, S. D.] Calif Acad Sci, San Francisco, CA 94118 USA.
[Borisy, G. G.; Miller, H.] Marine Biol Lab, Woods Hole, MA 02543 USA.
[Buizer, J. L.] Univ Arizona, Tucson, AZ USA.
[De Carvalho, M. R.] Univ Sao Paulo, BR-05508 Sao Paulo, Brazil.
[Donoghue, M. J.] Yale Univ, New Haven, CT USA.
[Gerson, E. M.] Tremont Res Inst, San Francisco, CA USA.
[Graham, C. H.] Univ Minnesota, St Paul, MN 55108 USA.
[Graves, P.] Maryland Dept Fish & Wildlife, Annapolis, MD USA.
[Graves, S. J.] Univ Alabama, Huntsville, AL 35899 USA.
[Guralnick, R. P.] Univ Colorado, CU Museum Nat Hist, Boulder, CO 80309 USA.
[Hanken, J.; Wilson, E. O.] Harvard Univ, Cambridge, MA 02138 USA.
[Lipscomb, D. L.] George Washington Univ, Washington, DC USA.
[Lovejoy, T. E.] George Mason Univ, Fairfax, VA 22030 USA.
[Naeem, S.] Columbia Univ, New York, NY USA.
[Novacek, M. J.; Platnick, N. I.] Amer Museum Nat Hist, New York, NY 10024 USA.
[Page, L. M.] Univ Florida, Gainesville, FL USA.
[Raven, P. H.] Missouri Bot Garden, St Louis, MO USA.
[Solis, M. A.] USDA, Systemat Entomol Lab, Beltsville, MD 20705 USA.
[Valdecasas, A. G.] CSIC, Museo Nacl Ciencias Nat, E-28006 Madrid, Spain.
[Vermeulen, N.] Univ Vienna, A-1010 Vienna, Austria.
[Vogel, J.] Museum Nat Kunde, Eberswalde, Germany.
[Woolley, J. B.] Texas A&M Univ, College Stn, TX USA.
RP Wheeler, QD (reprint author), Arizona State Univ, Tempe, AZ 85282 USA.
EM quentin.wheeler@asu.edu
RI Graham, Catherine/A-9560-2011; Knapp, Sandra/A-4856-2011; Miller,
Holly/I-6942-2015;
OI Knapp, Sandra/0000-0001-7698-3945; Miller, Holly/0000-0002-9076-5335;
Doyle, Vinson/0000-0002-2350-782X
FU Arizona State University (Office of the President, International
Institute for Species Exploration and Global Institute of
Sustainability); US National Science Foundation [DEB-1102500]; College
of Liberal Arts and Sciences, Arizona State University; NSF
[DEB-0316614]
FX Funds for the 'Sustain What?' workshop were provided by Arizona State
University (Office of the President, International Institute for Species
Exploration and Global Institute of Sustainability) and a grant from the
US National Science Foundation (DEB-1102500 to QDW). Further support was
provided by the College of Liberal Arts and Sciences, Arizona State
University and NSF (DEB-0316614 to SK). We thank the New York Botanical
Garden, New York Academy of Sciences and the Explorers Club for meeting
locations and Rebecca Albrecht and Carol Hughes for event planning and
media relations.
NR 90
TC 47
Z9 49
U1 7
U2 104
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1477-2000
EI 1478-0933
J9 SYST BIODIVERS
JI Syst. Biodivers.
PY 2012
VL 10
IS 1
BP 1
EP 20
DI 10.1080/14772000.2012.665095
PG 20
WC Biodiversity Conservation; Biology
SC Biodiversity & Conservation; Life Sciences & Biomedicine - Other Topics
GA 962AX
UT WOS:000305512500001
ER
PT J
AU Henry, PFP
Akuffo, VG
Chen, Y
Karouna-Renier, NK
Sprague, DT
Bakst, MR
AF Henry, Paula F. P.
Akuffo, Valorie G.
Chen, Yu
Karouna-Renier, Natalie K.
Sprague, Daniel T.
Bakst, Murray R.
TI Effect of 17 beta-trenbolone on male and female reproduction in Japanese
quail (Coturnix japonica)
SO AVIAN BIOLOGY RESEARCH
LA English
DT Article
DE endocrine disruption; avian reproduction; Japanese quail; sexual
maturation; histopathology; trenbolone
ID ENDOCRINE-DISRUPTING CHEMICALS; TRENBOLONE ACETATE; BIRDS;
FERTILIZATION; IMPACT; CATTLE; TURKEY
AB The anabolic steroid 17 beta trenbolone (17 beta-TB), a known endocrine disrupting chemical, may influence reproductive functions in avian wildlife. We evaluated the effects of dietary exposure to 17 beta-TB at 5 and 20 ppm on reproductive functional endpoints in Japanese quail during and after sexual maturation. In the male, 5 and 20 ppm treatments revealed no differences in body and testes weight, testes histology, plasma testosterone concentrations, or size and weight of the foam glands. However, the onset of foam production was significantly earlier (days of age) in the 20 ppm males. In females, dietary 17 beta-TB at 20 ppm caused a reduction in the number of maturing yellow yolk follicles and overall egg production. Plasma testosterone concentrations were reduced compared to controls. Histology of the oviductal sperm storage tubules was normal in all treatments. The number of sperm holes, sites on the perivitelline layer (PVL) where sperm bound and hydrolyzed a path through the PVL, was significantly greater in the 10th egg laid compared to the 1st egg laid in the 20 ppm treatment. Potential effects, albeit transient, on endpoints associated with male maturation warrant further investigation into the sensitivity of these measures in the event of embryonic and/or trans-generational exposure to 17 beta-TB.
C1 [Henry, Paula F. P.; Chen, Yu; Karouna-Renier, Natalie K.; Sprague, Daniel T.] USGS Patuxent Wildlife Res Ctr, US Dept Interior, Beltsville, MD 20705 USA.
[Akuffo, Valorie G.; Bakst, Murray R.] USDA, ARS, Anim Biosci & Biotechnol Lab, Beltsville, MD 20705 USA.
RP Henry, PFP (reprint author), USGS Patuxent Wildlife Res Ctr, US Dept Interior, Beltsville, MD 20705 USA.
EM phenry@usgs.gov
FU US EPA IAG [DW-14-92281401-2]; USGS Patuxent Wildlife Research Center;
USDA ARS
FX This study was supported in part by US EPA IAG DW-14-92281401-2 with
additional support from the USGS Patuxent Wildlife Research Center and
the USDA ARS. Use of trade, product, or firm names does not imply
endorsement by the US Government. We are thankful to the anonymous
reviewers for their insightful comments and suggestions.
NR 32
TC 5
Z9 5
U1 0
U2 15
PU SCIENCE REVIEWS 2000 LTD
PI ST ALBANS
PA PO BOX 314, ST ALBANS AL1 4ZG, HERTS, ENGLAND
SN 1758-1559
J9 AVIAN BIOL RES
JI Avian Biol. Res.
PY 2012
VL 5
IS 2
BP 61
EP 68
DI 10.3184/175815512X13350167598421
PG 8
WC Agriculture, Dairy & Animal Science; Ornithology; Zoology
SC Agriculture; Zoology
GA 959OH
UT WOS:000305321800001
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI History and Current Importance
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE History of sea beet; Crop evolution; Beta maritima history;
Domestication; Origins of sea beet; Researchers involved
ID BEET BETA-VULGARIS; SUGAR-BEET; WEED BEET; SUBSP MARITIMA; GENE FLOW;
PRODUCTION FIELDS; CULTIVATED BEETS; CROPPING SYSTEMS; SEED BANK;
REGISTRATION
AB Sea beet is known from prehistory for food and above all for medicinal uses. After domestication, beet became more and more important, especially after its most recent use as a sugar crop. But also the cultivation for leaves and root to be used as vegetables and cattle feed retains its economic value. Beta maritima has become crucial as source of useful traits, which disappeared in the crop during domestication. This research, which has led to important results, especially in the field of resistances to severe diseases, continues today. The activity of some involved scientists is recounted. An increasing amount of publications are dedicated to sea beet because the species also fits well into studies concerning population genetics, natural breeding systems, colonization, speciation, gene flow, etc.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com
NR 260
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 1
EP 74
DI 10.1007/978-1-4614-0842-0_1
D2 10.1007/978-1-4614-0842-0
PG 74
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100001
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI Range of Distribution
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Sea beet distribution; Sea beet habitat; Coastal distribution;
Mediterranean distribution; Geographic distribution; North Atlantic
populations
ID BETA-VULGARIS COMPLEX; WILD RELATIVES; BEET; MARITIMA; POPULATIONS;
DIVERSITY; NUCLEAR
AB Sea beet is the most widespread taxon within genus Beta, and can be found quite easily along the seashores of Mediterranean Sea and the European Atlantic Ocean. On these coasts, countless localizations have been reported in the literature beginning in the early 1700s. The frequency of sea beet populations decreases as one goes inland, where the origin of the populations is more likely due to hybridization between sea beet and cultivated beet crops. Although rare, the presence of sea beet has been reported on the shores of the Middle East North Sea, India, China, Japan, and California. In North America, wild populations of Beta maritima, Beta macrocarpa, and respective hybrids (with cultivated beet) likely originated from contaminated seed imported from Europe during colonization of California by the Europeans.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com; enrico.biancardi@alice.it;
Lee.Panella@ars.usda.gov; rtlewellen@hotmail.com
NR 73
TC 1
Z9 1
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 75
EP 84
DI 10.1007/978-1-4614-0842-0_2
D2 10.1007/978-1-4614-0842-0
PG 10
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100002
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI Morphology, Physiology, and Ecology
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Seed; Germination; Morphology; Flowering; Pollen; Male sterility; Gene
flow; Survival
ID BEET BETA-VULGARIS; CYTOPLASMIC MALE-STERILITY; MEDIATED GENE FLOW; SSP
MARITIMA L.; SUGAR-BEET; SEA BEET; WILD BEET; MOLECULAR
CHARACTERIZATION; CHROMOSOMAL ASSIGNMENT; POPULATION-STRUCTURE
AB The traits of Beta maritima have been reviewed and summarized from a number of recent and classical publications dealing with the ecology, morphology, and whole-plant physiology of the species. Because few papers have been written only on sea beet, B. maritima, most information comes from cultivated forms of Beta vulgaris. A striking feature of B. maritima gleaned from this review is how variable and adaptive it is. The species is fairly plastic allowing it to live in many different environments. This capacity for adaptation has been correlated with its breeding system, which allows sea beet to rapidly change reproduction systems, flowering time, life span, etc. according to the local environmental conditions. This is most evident to the observer in the differences between the Mediterranean populations with easy bolting, short life cycles, and those from the sea coasts of northwest Europe. This chapter provides the reader with a comprehensive overview of the plant and populations to answer the question: "What is B. maritima?"
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com
NR 236
TC 0
Z9 0
U1 0
U2 1
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 85
EP 136
DI 10.1007/978-1-4614-0842-0_3
D2 10.1007/978-1-4614-0842-0
PG 52
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100003
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI Taxonomy
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Taxonomy; Genus; Section; Species; DNA fingerprinting; Phylogentics; Sea
beet; Beet
ID PHYLOGENETIC-RELATIONSHIPS; SEQUENCE INFORMATION; SUGAR-BEET; BETA;
CHENOPODIACEAE; GENUS; PATELLIFOLIA; BETOIDEAE; ORIGIN; DNA
AB The high genetic variability and the presence of conspecific and interfertile wild and cultivated forms have made it difficult to adopt a stable systematic structure within the genus Beta. Further difficulties have been caused by the proliferation of synonyms and the confusion this has caused in the nomenclature, which has been reduced only slightly since Linne. The frequent errors in classification solely based on plant morphology are being reduced through the introduction of new molecular, DNA-based analyses. Consequently, because of our increasing ability to precisely establish differences or similarities among populations and genotypes, the taxonomy of genus Beta is becoming more accurate.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com; enrico.biancardi@alice.it;
Lee.Panella@ars.usda.gov; rtlewellen@hotmail.com
NR 94
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 137
EP 157
DI 10.1007/978-1-4614-0842-0_4
D2 10.1007/978-1-4614-0842-0
PG 21
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100004
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI Uses
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Sea beet; Medicinal herb; Digestive aid; Beet juice; Beet fiber;
Betacyanin dye; Beetroot; Recipes food; Medicinal uses
AB The many uses of the different parts of Beta maritima harvested in the wild are listed and described. Although eaten as a potherb before recorded history, most of our information about the uses of sea beet, and beets in general, is as a medicinal herb because this was the interest of most of the ancient authors who wrote about plants. Many of these medicinal uses have lost their importance with the advances of medical science. Nonetheless, sea beets (and other beets) are still used in homeopathic remedies and have a number of useful qualities, both for the smooth function of the digestive tract and to prevent disease.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com
NR 67
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 159
EP 171
DI 10.1007/978-1-4614-0842-0_5
D2 10.1007/978-1-4614-0842-0
PG 13
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100005
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI Source of Useful Traits
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Disease resistance; Rhizomania; Cercospora; Nematode; Drought; Salt
stress; Root rot; Virus; Curly top; Virus yellows; Powdery mildew;
Polymyxa betae
ID SUGAR-BEET GERMPLASM; NECROTIC-YELLOW-VEIN; ROOT-KNOT NEMATODE;
BETA-VULGARIS L.; HETERODERA-SCHACHTII-SCHM; POWDERY MILDEW RESISTANCE;
MOSAIC-VIRUS RESISTANCE; CERCOSPORA LEAF-SPOT; POLYMYXA-BETAE; DISEASE
RESISTANCE
AB In the late 1800s, there already was speculation that Beta maritima might provide a reservoir of resistance genes that could be utilized in sugar beet breeding. European researchers crossed B. maritima and sugar beet and observed many traits in the hybrid progeny. It is impossible to estimate how widely B. maritima was used in the production of commercial varieties, because most of the germplasm exchanges were informal and are difficult to document. Often these crosses of sugar beet with sea beet germplasm contained undesirable traits, e.g., annualism, elongated crowns, fangy roots, high fiber, red pigment (in root, leaf, or petiole) and much lower sucrose production. It is believed that lack of acceptance of B. maritima as a reservoir of genes was because most of the evaluations of the progeny were done in early generations: The reactions of the hybrids vulgaris x maritima were not impressive, and it is clear now that they were not adequately studied in the later generations.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com
NR 288
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 173
EP 223
DI 10.1007/978-1-4614-0842-0_6
D2 10.1007/978-1-4614-0842-0
PG 51
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100006
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI Cultivated Offspring
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Garden beet; Red beet; Leaf beet; Swiss chard; Sugar beet; Cultivated
beet; Energy beet; Fodder beet
ID BEET BETA-VULGARIS; SUGAR-BEET; GENETIC DIVERSITY; SELECTION; SOLIDS;
FOOD; WILD
AB Sea beet was first harvested wild for leaves to be used as a vegetable and potherb. Once domestication had begun and the root and hypocotyls were enlarged, the enlarged root was uses as a vegetable after cooking. Fodder and sugar beet appeared only a few centuries ago in Central Europe. Sugar has become one of the more important crops and, consequently, more studied compared to the rest of the cultivated beet types. Many of the advances obtained in breeding sugar beet (monogermy, male sterility, and some resistances) have been utilized by other beet crop breeders. Energy beet is still an unknown. Whether the interest shown today will develop it into another major crop, and what that crop would look like are yet to be determined.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com
NR 64
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 225
EP 243
DI 10.1007/978-1-4614-0842-0_7
D2 10.1007/978-1-4614-0842-0
PG 19
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100007
ER
PT B
AU Biancardi, E
Panella, LW
Lewellen, RT
AF Biancardi, Enrico
Panella, Leonard W.
Lewellen, Robert T.
BA Biancardi, E
Panella, LW
Lewellen, RT
BF Biancardi, E
Panella, LW
Lewellen, RT
TI The Future
SO BETA MARITMA: THE ORIGIN OF BEETS
LA English
DT Article; Book Chapter
DE Conservation; Ex situ conservation; In situ conservation; Genetic
resources; Germplasm collection; Transgenic
ID SUGAR-BEET; CLIMATIC IMPACT; BETA GERMPLASM; RESISTANCE; PRODUCTIVITY;
EUROPE; DISEASES; HYBRIDS
AB We have seen that over the past 60 years our knowledge of Beta maritima has grown tremendously. Its importance as a genetic resource in the breeding of sugar beet and other cultivated beet crops has become recognized. Nonetheless, only in the last 30 years has there been a coordinated effort to conserve sea beet germplasm. The international database for Beta lists more than 11,500 Beta/Patellifolia accessions in 33 gene banks worldwide. Many accessions likely are cultivated beets, but a substantial number are B. maritima. However, because species evolution no longer takes place in an ex situ gene bank collection, there is no further adaptation to their natural environment. Therefore, there is an increasing interest in providing in situ conservation of beet wild relatives in general, and B. maritima in particular. If the concerns with growing genetically modified sugar beet can be satisfied, the potential is large, but even so sea beet provides a reservoir of genetic resources to continue the battle against pest and pathogens of cultivated beet. Whatever the effects of global climate change may prove to be, it is likely that the superior genetic diversity in sea beet will provide the genetic traits necessary to maintain the performance of our crop plants in a changing environment.
C1 [Biancardi, Enrico] Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
[Panella, Leonard W.] ARS, Crop Res Lab, USDA, Ft Collins, CO USA.
[Lewellen, Robert T.] ARS, Crop Improvement & Protect Res Unit, USDA, Salinas, CA USA.
RP Biancardi, E (reprint author), Consiglio Ric Sperimentaz Agr CRA, Rovigo Stn, Rome, Italy.
EM enrico.biancardi@alice.it; Lee.Panella@ars.usda.gov;
rtlewellen@hotmail.com
NR 51
TC 0
Z9 0
U1 0
U2 1
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-0841-3
PY 2012
BP 245
EP 257
DI 10.1007/978-1-4614-0842-0_8
D2 10.1007/978-1-4614-0842-0
PG 13
WC Plant Sciences
SC Plant Sciences
GA BYS61
UT WOS:000299968100008
ER
PT J
AU Busman, M
Desjardins, AE
Proctor, RH
AF Busman, M.
Desjardins, A. E.
Proctor, R. H.
TI Analysis of fumonisin contamination and the presence of Fusarium in
wheat with kernel black point disease in the United States
SO FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL
EXPOSURE & RISK ASSESSMENT
LA English
DT Article
DE LC/MS; microbiology; survey; mycotoxins - fumonisins; cereals and grain
ID FUJIKUROI SPECIES COMPLEX; BIOSYNTHETIC GENES; MATING POPULATIONS;
PROLIFERATUM; MAIZE; B-1; MYCOTOXINS; STRAINS
AB The ability of the fungus Fusarium proliferatum to cause kernel black point disease in wheat was previously established, but natural contamination of black point wheat with both F. proliferatum and fumonisin mycotoxins has not been studied in the United States. Low levels of fumonisins were detected in nine of 43 wheat samples with kernel black point disease that were obtained from across the United States. A subset of samples was contaminated with F. proliferatum as well as with F. fujikuroi, F. nygamai, F. thapsinum and F. verticillioides, species closely related to F. proliferatum and morphologically similar to it in that they produce chains of asexual spores, or conidia. Nevertheless, of conidial chain-forming fusaria isolated from symptomatic wheat, F. proliferatum dominated. In greenhouse tests, isolates of F. proliferatum and the other species recovered from wheat samples were able to cause symptoms of kernel black point and, in some cases, low levels of fumonisin contamination of wheat. These data add to the understanding of the risk of fumonisin contamination of wheat and the potential for Fusarium species to cause kernel black point disease and fumonisin contamination of wheat. Further, the results of this study indicate that while US-grown wheat can sporadically be contaminated by fumonisins, the natural contamination levels seem to be low. The observations made provide evidence that fumonisins are not likely to be a factor contributing to the ability of Fusarium to cause kernel black point disease.
C1 [Busman, M.; Desjardins, A. E.; Proctor, R. H.] USDA ARS, Natl Ctr Agr Utilizat Res, Bacterial Foodborne Pathogens & Mycol Res Unit, Peoria, IL 61604 USA.
RP Busman, M (reprint author), USDA ARS, Natl Ctr Agr Utilizat Res, Bacterial Foodborne Pathogens & Mycol Res Unit, 1815 N Univ St, Peoria, IL 61604 USA.
EM mark.busman@ars.usda.gov
NR 34
TC 10
Z9 10
U1 1
U2 9
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1944-0049
J9 FOOD ADDIT CONTAM A
JI Food Addit. Contam. Part A-Chem.
PY 2012
VL 29
IS 7
BP 1092
EP 1100
DI 10.1080/19440049.2012.671787
PG 9
WC Chemistry, Applied; Food Science & Technology; Toxicology
SC Chemistry; Food Science & Technology; Toxicology
GA 952VL
UT WOS:000304821400009
PM 22494515
ER
PT J
AU Maragos, CM
AF Maragos, C. M.
TI Signal amplification using colloidal gold in a biolayer
interferometry-based immunosensor for the mycotoxin deoxynivalenol
SO FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL
EXPOSURE & RISK ASSESSMENT
LA English
DT Article
DE screening - immunoassays; screening - biosensor; mycotoxins -
trichothecenes; trichothecenes; cereals and grain
ID TANDEM MASS-SPECTROMETRY; SOLID-PHASE EXTRACTION; LIQUID-CHROMATOGRAPHY;
MONOCLONAL-ANTIBODIES; B-TRICHOTHECENES; LABEL-FREE; WHEAT;
SPECTROSCOPY; REACTIVITY; VOMITOXIN
AB Deoxynivalenol (DON) is a toxin produced by certain species of Fusarium fungi that can infest wheat, barley and corn. The fungi cause diseases in crops worldwide and some of the secondary metabolites, such as DON, can adversely affect animal health and food safety. To monitor DON in wheat rapidly, a biosensor using the principle of biolayer interferometry (BLI) was developed. The signal from the sensor was substantially amplified through the use of a primary antibody-colloidal gold conjugate. The amplification was much greater in the presence of wheat matrix than in buffered solution, suggesting matrix components may have contributed to the enhancement. The improved signal provided by the amplification allowed for the development of rapid qualitative and quantitative assays. The limit of detection of the method was 0.09 mg kg(-1); the limit of quantitation was 0.35 mg kg(-1). Recovery from wheat spiked over the range from 0.2 to 5 mg kg(-1) averaged 103% (RSD = 12%). The quantitative assay compared favourably (r(2) = 0.9698) with a reference chromatographic method for 40 naturally contaminated wheats. The qualitative assay was able to classify accurately the same group of 40 samples as either above or below a 0.5 mg kg(-1) threshold. These results suggest that the BLI technique can be used to measure DON in wheat rapidly.
C1 ARS, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
RP Maragos, CM (reprint author), ARS, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
EM chris.maragos@ars.usda.gov
NR 37
TC 10
Z9 11
U1 8
U2 32
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1944-0049
J9 FOOD ADDIT CONTAM A
JI Food Addit. Contam. Part A-Chem.
PY 2012
VL 29
IS 7
BP 1108
EP 1117
DI 10.1080/19440049.2012.671789
PG 10
WC Chemistry, Applied; Food Science & Technology; Toxicology
SC Chemistry; Food Science & Technology; Toxicology
GA 952VL
UT WOS:000304821400011
PM 22489824
ER
PT J
AU Lens, F
Cooper, L
Gandolfo, MA
Groover, A
Jaiswal, P
Lachenbruch, B
Spicer, R
Staton, ME
Stevenson, DW
Walls, RL
Wegrzyn, J
AF Lens, Frederic
Cooper, Laurel
Gandolfo, Maria Alejandra
Groover, Andrew
Jaiswal, Pankaj
Lachenbruch, Barbara
Spicer, Rachel
Staton, Margaret E.
Stevenson, Dennis W.
Walls, Ramona L.
Wegrzyn, Jill
TI AN EXTENSION OF THE PLANT ONTOLOGY PROJECT SUPPORTING WOOD ANATOMY AND
DEVELOPMENT RESEARCH
SO IAWA JOURNAL
LA English
DT Article
ID POPULUS-TRICHOCARPA; MERISTEM; GENOME
C1 [Lens, Frederic] Netherlands Ctr Biodivers Nat, NL-2300 RA Leiden, Netherlands.
[Cooper, Laurel; Jaiswal, Pankaj] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA.
[Gandolfo, Maria Alejandra] Cornell Univ, Dept Plant Biol, LH Bailey Hortorium, Ithaca, NY 14853 USA.
[Groover, Andrew] US Forest Serv, Inst Forest Genet, Davis, CA 95618 USA.
[Lachenbruch, Barbara] Oregon State Univ, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA.
[Spicer, Rachel] Connecticut Coll, Dept Bot, New London, CT 06320 USA.
[Staton, Margaret E.] Clemson Univ, Genom Inst, Clemson, SC 29634 USA.
[Stevenson, Dennis W.; Walls, Ramona L.] New York Bot Garden, Bronx, NY 10458 USA.
[Wegrzyn, Jill] Dept Plant Sci, Davis, CA 95616 USA.
RP Lens, F (reprint author), Netherlands Ctr Biodivers Nat, POB 9514, NL-2300 RA Leiden, Netherlands.
EM lens@nhn.leidenuniv.nl
RI Lens, Frederic/B-8482-2011; Jaiswal, Pankaj/H-7599-2016;
OI Lens, Frederic/0000-0002-5001-0149; Jaiswal, Pankaj/0000-0002-1005-8383;
Wegrzyn, Jill/0000-0001-5923-0888
FU National Science Foundation - IOS [0822201]
FX The authors wish to thank Barry Smith (University at Buffalo, NY, USA)
for advice on ontology building during the workshop. This work is
supported by the National Science Foundation - IOS #0822201 (PI: P
Jaiswal, co-PIs: MA Gandolfo, DW Stevenson).
NR 16
TC 3
Z9 3
U1 0
U2 4
PU INT ASSOC WOOD ANATOMISTS
PI LEIDEN
PA RIJKSHERBARIUM, PO BOX 9514, 2300 LEIDEN, NETHERLANDS
SN 0928-1541
J9 IAWA J
JI IAWA J.
PY 2012
VL 33
IS 2
BP 113
EP 117
PG 5
WC Forestry
SC Forestry
GA 957WT
UT WOS:000305198500001
ER
PT J
AU Bebak, J
Wagner, B
AF Bebak, Julie
Wagner, Bruce
TI Use of Vaccination against Enteric Septicemia of Catfish and Columnaris
Disease by the U.S. Catfish Industry
SO JOURNAL OF AQUATIC ANIMAL HEALTH
LA English
DT Article
ID EDWARDSIELLA-ICTALURI VACCINE; CHANNEL CATFISH;
FLAVOBACTERIUM-COLUMNARE; ICHTHYOPHTHIRIUS-MULTIFILIIS; EXPRESSION
PROFILE; IMMUNE-RESPONSE; MULTIPLE GENES; PUNCTATUS; EFFICACY; FISH
AB Vaccination is an effective strategy used for the protection of food animals against infectious diseases. A 2010 U. S. Department of Agriculture questionnaire examined U. S. catfish industry use (in 2009) of two commercial vaccines that provide protection against enteric septicemia of catfish (ESC) and columnaris disease, catfish producers' opinions regarding the percentage of vaccinated fish they expect to be protected, and producers' general expectations regarding survival of vaccinated fish compared with unvaccinated fish. During 2009, 9.7% of the total fingerling operations used one or both vaccines; 12.3% of the total industry fry production was vaccinated against ESC, and 17.0% was vaccinated against columnaris disease. Of the producers who grew food-sized catfish to harvest, 6.7% used vaccinated catfish. The farms that did not use vaccinated fish for grow out had a mean size of 63.4 water surface hectares (156.6 water surface acres). The operations that used vaccinated fish were larger (mean size = 206.6 water surface hectares, or 510.6 water surface acres). The producers that stocked ESC-vaccinated fish for grow out represented 19.0% of the total water surface area of food fish production; producers that stocked columnaris-vaccinated fish represented 16.6% of the total area. Of the producers that stocked ESC-vaccinated catfish, 41.9% thought that survival was better in vaccinated fish than in unvaccinated fish; of the producers that stocked columnaris-vaccinated catfish, 46.2% thought that vaccinated fish displayed better survival. However, 37.5% of producers that used the ESC vaccine and 39.7% of producers that used the columnaris vaccine did not know whether vaccination improved survival rates. When all producers were asked about their expectations regarding the percentage of vaccinated fish that would be protected from disease, 52.4% responded that they expected 100% of their fish to be protected. More producer information about reasonable expectations regarding vaccine efficacy, the conditions underwhich immunosuppression and vaccine failure can occur, and assessment of vaccine performance may result in increased use of vaccination as a tool for the catfish industry.
C1 [Bebak, Julie] ARS, USDA, Auburn, AL 36832 USA.
[Wagner, Bruce] US Anim & Plant Hlth Inspect Serv, USDA, Vet Serv, Ctr Epidemiol & Anim Hlth, Ft Collins, CO 80526 USA.
RP Bebak, J (reprint author), POB 24, Auburn, AL 36831 USA.
EM jbebakwilliams@gmail.com
FU USDA Agricultural Research Service, Current Research Information Systems
Project [6420-32000-024-00D]; Centers for Epidemiology and Animal Health
(USDA Animal and Plant Health Inspection Service, Veterinary Services)
FX We thank Christine Kopral for assistance with statistical analysis. This
work was supported by the USDA Agricultural Research Service, Current
Research Information Systems Project 6420-32000-024-00D and by the
Centers for Epidemiology and Animal Health (USDA Animal and Plant Health
Inspection Service, Veterinary Services). We gratefully acknowledge the
assistance of the USDA employees who collected and analyzed the 2003
data, as well as the producers and operation managers that participated
in the 2003 and 2010 questionnaires. This research was conducted in
compliance with all relevant federal guidelines and institutional
policies. Mention of trade names or commercial products in this
publication is solely for the purpose of providing specific information
and does not imply recommendation or endorsement by the USDA.
NR 31
TC 7
Z9 7
U1 1
U2 4
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0899-7659
J9 J AQUAT ANIM HEALTH
JI J. Aquat. Anim. Health
PY 2012
VL 24
IS 1
BP 30
EP 36
DI 10.1080/08997659.2012.667048
PG 7
WC Fisheries; Veterinary Sciences
SC Fisheries; Veterinary Sciences
GA 959DP
UT WOS:000305292100005
PM 22779211
ER
PT J
AU Sivapatham, P
Potts, MC
Delise, JA
Sajwan, KS
Alva, AK
Jayaraman, K
Chakraborty, P
AF Sivapatham, Paramasivam
Potts, Mariel C.
Delise, Jeffrey A.
Sajwan, Kenneth S.
Alva, Ashok K.
Jayaraman, Kuppuswamy
Chakraborty, Paromita
TI Evaluation of wastewater treatment by-products as soil amendment: Growth
of sorghum-sudan grass and trace elements concentrations
SO JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS
SUBSTANCES & ENVIRONMENTAL ENGINEERING
LA English
DT Article
DE Chemical association; growth performance; sewage sludge; sewage sludge
ash; soil amendment; sorghum-sudan grass; weathered sewage sludge ash
ID COMPOSTED SEWAGE-SLUDGE; CATTLE MANURE; FLY-ASH; NITROGEN; BEHAVIOR;
INCINERATION; PHOSPHORUS; TURFGRASS; METALS
AB Wastewater treatment by-products (WTBP), such as sewage sludge (SS) may be used to enhance soil chemical, physical, and biological properties. These enhanced soil properties, in turn, could from its source of production to its site of application. These concerns may be mitigated by incineration of the SS to produce ash (SSA) and dissolved in water and stored in ponds as contribute to an increase in plant growth, production, mineral nutrition. Some SS is difficult to handle due to bad odor in its raw state and has large mass, hence expensive for transportation weathered SSA (WSSA). A greenhouse study was conducted using Candler fine sand CFS; (CFS; pH = 6.8) and Ogeechee loamy sand OLS; (pH = 5.2) with application of either 0, 24.7, 49.4, 98.8, or 148.2 Mg ha(-1) as either SS, SSA, or WSSA to evaluate the biomass production and elemental composition responses of sorghum-sudan grass (Sorghum vulgaris var. Sudanese hitche). Shoot and root biomass were 2 to 3 fold greater in the soil amended with SS, than either SSA or WSSA. Concentrations of nutrient and trace elements in the shoots and roots increased with increasing rates of amendments. Application of these by-products up to 98.8Mg ha(-1) rate did not adversely affect growth or accumulation of trace elements in sorghum-sudan grass. Long-term field studies are recommended to investigate the potential leaching of various elements from the amended soils in addition to evaluation of plant growth and production responses to determine the acceptable rates of these by-products as amendments to agricultural soils.
C1 [Sivapatham, Paramasivam; Potts, Mariel C.; Delise, Jeffrey A.; Jayaraman, Kuppuswamy; Chakraborty, Paromita] Savannah State Univ, Dept Engn Technol & Math, Savannah, GA 31404 USA.
[Sajwan, Kenneth S.] Savannah State Univ, Dept Nat Sci, Savannah, GA 31404 USA.
[Alva, Ashok K.] USDA ARS, Pacific W Area, Vegetable & Forage Crops Res Unit, Prosser, WA 99350 USA.
RP Sivapatham, P (reprint author), Savannah State Univ, Dept Engn Technol & Math, POB 20089, Savannah, GA 31404 USA.
EM siva@savannahstate.edu
FU Department of Education and Environmental justice, community education,
and advisory of the Department of Energy/Environmental Protection Agency
FX Authors appreciate the financial support for this study through Title
III program and the Department of Education and Environmental justice,
community education, and advisory project of the Department of
Energy/Environmental Protection Agency. We appreciate the assistance and
cooperation of the President Street wastewater treatment plant staff,
Savannah, GA.
NR 22
TC 4
Z9 4
U1 3
U2 18
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1093-4529
J9 J ENVIRON SCI HEAL A
JI J. Environ. Sci. Health Part A-Toxic/Hazard. Subst. Environ. Eng.
PY 2012
VL 47
IS 11
BP 1678
EP 1686
DI 10.1080/10934529.2012.687261
PG 9
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA 959FS
UT WOS:000305298900023
PM 22702829
ER
PT J
AU Schmitt, MR
Budde, AD
AF Schmitt, Mark R.
Budde, Allen D.
TI Wort Free Amino Nitrogen Analysis Adapted to a Microplate Format
SO JOURNAL OF THE AMERICAN SOCIETY OF BREWING CHEMISTS
LA English
DT Article
ID BARLEY; ASSAY; QUANTITIES
AB J. Am. Soc. Brew. Chem. 70(2):95-102, 2012 The standard method for determining wort free amino nitrogen content is a long-established but now relatively outdated procedure, calling for the use of test tubes, marbles, several water baths (boiling and 20 C), manual sample transfers, and a conventional spectrophotometer. Currently, many malting quality laboratories avoid use of this cumbersome manual system by adopting automated chemistry analysis systems as their in-house standard method for wort free amino nitrogen analysis. Several recent papers have taken a somewhat different approach to measuring malting quality by adapting the basic analytical method to microtiter plates, microplate readers, and related instrumentation. This streamlines sample handling and increases sample capacity. However, results from the several free amino nitrogen methods published previously have not been directly compared. In this study, we analyzed several malts using the standard ASBC Wort-12 method, our standard Skalar segmented flow analysis chemistry system, and several variations of those two chemistries in microplate formats to compare the results obtained by the different analysis systems. Among these methods, the results from the manual ASBC Wort-12, the automated Skalar system, and a microplate-format assay based on the Skalar reagents agreed well. Surprisingly, however, direct adaptation of the Wort-12 reagents, times, and temperatures to the microplate format yielded inconsistent results. We examined a number of parameters in the microplate-format Wort-12 implementation but were unable to identify a single factor responsible for the divergence of results. From these results, we recommend adapting the chemistry from the Skalar segmented flow analysis system to a microplate format for analysis of wort free amino nitrogen content.
C1 [Schmitt, Mark R.; Budde, Allen D.] USDA ARS, Cereal Crops Res Unit, Madison, WI 53726 USA.
RP Schmitt, MR (reprint author), USDA ARS, Cereal Crops Res Unit, 502 Walnut St, Madison, WI 53726 USA.
EM mark.schmitt@ars.usda.gov
NR 9
TC 2
Z9 2
U1 0
U2 2
PU AMER SOC BREWING CHEMISTS INC
PI ST PAUL
PA 3340 PILOT KNOB RD, ST PAUL, MN 55121-2097 USA
SN 0361-0470
J9 J AM SOC BREW CHEM
JI J. Am. Soc. Brew. Chem.
PY 2012
VL 70
IS 2
BP 95
EP 102
DI 10.1094/ASBCJ-2012-0321-01
PG 8
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 959JN
UT WOS:000305308800002
ER
PT J
AU Hall, WA
Johnston, MV
AF Hall, Wiley A.
Johnston, Murray V.
TI The Thermal-Stability of Oligomers in Alpha-Pinene Secondary Organic
Aerosol
SO AEROSOL SCIENCE AND TECHNOLOGY
LA English
DT Article
ID EVAPORATION KINETICS; MASS-SPECTROMETRY; VOLATILITY; THERMODENUDER;
EVOLUTION; PHASE; OZONOLYSIS; COMPONENTS; DILUTION
AB Recent studies characterizing laboratory generated secondary organic aerosol (SOA) have shown that 50% or more of the particle mass is made up of oligomeric species, which based on molecular weight and structure should be nonvolatile. On the other hand, about 75% the particle mass is lost when SOA is passed through a denuder heated to 100 degrees C, suggesting that it is semi-volatile. To study the reason for this discrepancy, the chemical effects of a thermal denuder (TD) on oligomers in laboratory SOA formed by ozonolysis of alpha-pinene were examined with high-resolution molecular mass spectrometry. Both monomers and oligomers in the particle phase were lost to the gas phase upon heating to 100 degrees C. Additionally, when the species released to the gas phase during heating were allowed to readsorb onto the remaining particle mass, almost all of the readsorbed material was monomeric. Both of these observations suggest that oligomers decompose when heated in a TD. Chemical analysis of the remaining particle mass after passing through the TD showed formation of many new compounds that corresponded to oligomer decomposition products. While similar experiments should be performed with other aerosol types, these results suggest that care must be taken when attempting to use a TD at an elevated temperature to infer the volatility of SOA at ambient temperature.
C1 [Hall, Wiley A.; Johnston, Murray V.] Univ Delaware, Dept Chem & Biochem, Newark, DE 19716 USA.
[Hall, Wiley A.] ARS, USDA, Parlier, CA USA.
RP Johnston, MV (reprint author), Univ Delaware, Dept Chem & Biochem, 102 Lammot Dupont Lab, Newark, DE 19716 USA.
EM mvj@udel.edu
NR 33
TC 11
Z9 11
U1 6
U2 51
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0278-6826
EI 1521-7388
J9 AEROSOL SCI TECH
JI Aerosol Sci. Technol.
PY 2012
VL 46
IS 9
BP 983
EP 989
DI 10.1080/02786826.2012.685114
PG 7
WC Engineering, Chemical; Engineering, Mechanical; Environmental Sciences;
Meteorology & Atmospheric Sciences
SC Engineering; Environmental Sciences & Ecology; Meteorology & Atmospheric
Sciences
GA 950ST
UT WOS:000304670000004
ER
PT J
AU Wu, W
Ding, Y
Wei, W
Davis, RE
Lee, IM
Hammond, RW
Zhao, Y
AF Wu, W.
Ding, Y.
Wei, W.
Davis, R. E.
Lee, I. -M.
Hammond, R. W.
Zhao, Y.
TI Salicylic acid-mediated elicitation of tomato defence against infection
by potato purple top phytoplasma
SO ANNALS OF APPLIED BIOLOGY
LA English
DT Article
DE Infection rate; phytoplasma resistance; potato purple top disease;
symptom reduction
ID SYSTEMIC ACQUIRED-RESISTANCE; POLYMERASE-CHAIN-REACTION; TRANSMITTED
VIRESCENCE AGENT; WRKY70 TRANSCRIPTION FACTOR; MULTIPLE STRESS
TOLERANCE; REAL-TIME PCR; DISEASE RESISTANCE; PLANT DEFENSE;
MYCOPLASMALIKE ORGANISMS; SIGNALING PATHWAYS
AB Recent outbreaks and continued spread of diseases caused by phytoplasmas in potato, tomato and other vegetable crops in the USA accentuates the need for practical strategies to mitigate the impact of the phytoplasmal diseases. The purpose of this study was to investigate whether exogenous application of salicylic acid (SA) on healthy tomato seedlings would enhance the plants' defence against a subsequent potato purple top (PPT) phytoplasma infection. Our results showed that a twice-applied SA pretreatment, at 4 and 2 days before phytoplasma inoculation, significantly decreased the rate of PPT phytoplasma infection and reduced disease symptoms. At 40?days postinoculation (dpi), while 94% of the PPT phytoplasma-inoculated control plants exhibited characteristic PPT symptoms, 53% of the SA-pretreated, PPT phytoplasma-inoculated plants remained symptom-free with no molecular evidence of phytoplasma infection. The remaining 47% of SA-treated plants became infected, but symptoms were much milder and the average phytoplasma titre was more than 300 times lower compared with that in control plants. Real-time qRT-PCR assays revealed that SA-pretreatment caused transcriptional reprogramming of three defence-related genes. Up-regulations of a WRKY-type transcriptional factor gene (LeWRKY1) and a mitogen-activated protein kinase gene (LeMPK3) in an early stage following graft inoculation, and a sustained higher level expression of a downstream pathogenesis-related protein gene (LePRP1), were observed in SA-pretreated, PPT phytoplasma-inoculated plants. With the dosage and treatment regime implemented in this study, no noticeable phytotoxic effects or other negative impact on vegetative growth or reproductive development was observed in SA-treated plants throughout our experiment. Our findings encourage field trials of SA pretreatment as a possible approach to protect crops from phytoplasmal diseases.
C1 [Wu, W.; Ding, Y.; Wei, W.; Davis, R. E.; Lee, I. -M.; Hammond, R. W.; Zhao, Y.] USDA ARS, Mol Plant Pathol Lab, Beltsville, MD USA.
[Wei, W.] Univ Maryland, Inst Biosci & Biotechnol Res, College Pk, MD 20742 USA.
RP Zhao, Y (reprint author), SDA Agr Res Serv, Mol Plant Pathol Lab, BARC W, Room 213,Bldg 004,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM yan.zhao@ars.usda.gov
NR 62
TC 8
Z9 9
U1 2
U2 22
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0003-4746
J9 ANN APPL BIOL
JI Ann. Appl. Biol.
PY 2012
VL 161
IS 1
BP 36
EP 45
DI 10.1111/j.1744-7348.2012.00550.x
PG 10
WC Agriculture, Multidisciplinary
SC Agriculture
GA 954YU
UT WOS:000304984900006
ER
PT J
AU Nissinen, AI
Lemmetty, A
Pihlava, JM
Jauhiainen, L
Munyaneza, JE
Vanhala, P
AF Nissinen, A. I.
Lemmetty, A.
Pihlava, J. -M.
Jauhiainen, L.
Munyaneza, J. E.
Vanhala, P.
TI Effects of carrot psyllid (Trioza apicalis) feeding on carrot yield and
content of sugars and phenolic compounds
SO ANNALS OF APPLIED BIOLOGY
LA English
DT Article
DE Candidatus Liberibacter solanacearum'; Daucus carota; leaf
discolouration; phenolic compounds; reflectance; sugars; Trioza apicalis
ID CANDIDATUS LIBERIBACTER SOLANACEARUM; ZEBRA CHIP DISEASE;
BACTERICERA-COCKERELLI SULC; 16S RIBOSOMAL-RNA; DAUCUS-CAROTA L.;
HEMIPTERA TRIOZIDAE; FORSTER HOMOPTERA; SENSORY QUALITY; AMINO-ACIDS;
1ST REPORT
AB Carrot psyllid, Trioza apicalis, is a serious pest of carrot in Northern Europe, as it can significantly damage young carrot seedlings in a period as short as 3 days. This study was conducted to investigate effects of carrot psyllid feeding at different plant growth stages on carrot yield and to assess changes in content of sugars, phenolics and related compounds in carrot roots resulting from the psyllid feeding. In addition, reflectance of carrot leaves was measured to assess the intensity of discolouration in damaged leaves. Results showed that carrot yield was significantly reduced by a 3-day carrot psyllid feeding period when the seedlings were exposed to psyllids at 1- or 2-leaf stage. However, at 4-leaf stage feeding by one carrot psyllid did not reduce yield. Sucrose concentration in the damaged roots was significantly decreased, whereas concentrations of some phenolic compounds were significantly increased. The reflectance of leaves of damaged carrots differed significantly from those of undamaged control leaves. These observations indicate that carrot psyllid damage has potential to lower not only the carrot yield, but also the carrot crop quality. No phytoplasma was detected in the carrots exposed to psyllids, but recently, T. apicalis has been associated with Candidatus Liberibacter solanacearum. The role of carrot psyllid feeding and the psyllid-associated bacterium in the damage formation are discussed.
C1 [Nissinen, A. I.; Lemmetty, A.; Jauhiainen, L.] MTT Agrifood Res Finland, Plant Prod Res, FI-31600 Jokioinen, Finland.
[Pihlava, J. -M.] MTT Agrifood Res Finland, Biotechnol & Food Res, FI-31600 Jokioinen, Finland.
[Munyaneza, J. E.] USDA ARS, Yakima Agr Res Lab, Wapato, WA 98951 USA.
[Vanhala, P.] MTT Agrifood Res Finland, Hort, Piikkio 21500, Finland.
RP Nissinen, AI (reprint author), MTT Agrifood Res Finland, Plant Prod Res, FI-31600 Jokioinen, Finland.
EM anne.nissinen@mtt.fi
FU Maiju ja Yrjo Rikalan Puutarhasaatio; Ministry of Agriculture and
Forestry (MTT) [21040069]
FX We thank Timo Jaska, Outi Jarvinen, Senja Rasanen and Timo Vaatainen for
their technical assistance and Pirjo Rantamaki from MTT Biotechnology
and Food Research for the possibility to use the spectrophotometer. We
are grateful to two anonymous reviewers for their helpful comments. This
work was partly funded by a grant from Maiju ja Yrjo Rikalan
Puutarhasaatio and partly by the Ministry of Agriculture and Forestry
(MTT's project number 21040069).
NR 76
TC 9
Z9 9
U1 3
U2 30
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0003-4746
J9 ANN APPL BIOL
JI Ann. Appl. Biol.
PY 2012
VL 161
IS 1
BP 68
EP 80
DI 10.1111/j.1744-7348.2012.00551.x
PG 13
WC Agriculture, Multidisciplinary
SC Agriculture
GA 954YU
UT WOS:000304984900009
ER
PT J
AU Codling, EE
Raja, AW
AF Codling, Eton E.
Raja, Akanksha W.
TI Long-Term Effects of Fluidized Bed Combustion Material Applied at
Disposal Levels on Soil Properties
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Coal by-products; metals; nutrients
ID BY-PRODUCTS; PHOSPHORUS; TOXICITY; GROWTH; LITTER; ASH
AB This study was conducted to assess changes in soil properties of a soil that received a one-time application (360 Mg ha(-1)) of fluidized bed combustion material (FBCM) 23 years earlier. Soil samples were taken at three depths (0-10, 10-20, and 20-30 cm). Samples were also collected from an adjacent field with the same soil type for control. Hot nitric acid and Mehlich 3 extractions were used for total and extractable elements. Analyses indicated improvement in soil physical and chemical properties after 23 years of FBCM application. For example at the 20- to 30-cm depth, soil pH values increased from 4.9 to 7.7, whereas calcium concentrations increased from 0.23 to 1.52 g kg(-1) with FBCM amendment. In most cases, metal concentrations were less with FBCM amendment. Results from this study demonstrated that soil physical and chemical improvements from FBCM were maintained even 23 years after an extremely high application of FBCM.
C1 [Codling, Eton E.] USDA ARS, Environm Management & By Prod Utilizat Lab, Beltsville, MD 20705 USA.
[Raja, Akanksha W.] Univ Maryland Baltimore Cty, Baltimore, MD 21228 USA.
RP Codling, EE (reprint author), USDA ARS, Environm Management & By Prod Utilizat Lab, 10300 Baltimore Ave Beltsville, Beltsville, MD 20705 USA.
EM eton.codling@ars.usda.gov
NR 36
TC 0
Z9 0
U1 0
U2 3
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 12
BP 1720
EP 1731
DI 10.1080/00103624.2012.681743
PG 12
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 954BZ
UT WOS:000304921900010
ER
PT J
AU Budy, P
Wood, S
Roper, B
AF Budy, Phaedra
Wood, Sara
Roper, Brett
TI A Study of the Spawning Ecology and Early Life History Survival of
Bonneville Cutthroat Trout
SO NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT
LA English
DT Article
ID BULL TROUT; SNAKE RIVER; REDD COUNTS; MIGRATION PATTERNS; CHINOOK
SALMON; GOLDEN TROUT; BROWN TROUT; HABITAT; ABUNDANCE; TRIBUTARY
AB We completed a large-scale field experiment in four tributaries of the Logan River, Utah, where the largest metapopulation of imperiled Bonneville cutthroat trout Oncorhynchus clarkii utah persists. We documented the spatial and temporal distributions of spawners, quantified substrate use versus substrate availability, and evaluated differences in hatch and emergence fry success between and among sites in relation to habitat characteristics. We observed considerable variability in the timing, magnitude, and duration of spawning among study areas (streams), in part as a function of a variable, multipeaked hydrograph. Nevertheless, across study areas, >70% of redds were constructed on the final descending limb of the hydrograph. Despite large differences in the amount of spawning substrate available, Bonneville cutthroat trout utilized a narrow range of substrate and sizes (3-80 mm) similar to that utilized by other subspecies of cutthroat trout, albeit biased towards larger sizes. Water temperatures generally remained below the recommended range (6-17 degrees C) for spawning; however, the viability of this metapopulation of cutthroat trout suggests that the recommended temperature range for spawning is overestimated for this subspecies and (or) does not account for local thermal adaptation. Hatch varied from 43% to 77% and emergence survival from 39% to 65% among streams, and within-stream variability was substantial; both survival rates declined significantly as a function of increased fine sediment concentrations. Egg development rates were nearly 50% greater in a high-elevation tributary where redd counts were also lowest. In high, mountain systems with short growing seasons, this incubation delay likely presents a significant growth disadvantage for age-0 trout. Our research enhances our understanding of Bonneville cutthroat trout spawning ecology and early survival and provides critical information for aiding in the development of benchmarks for their recovery. Effective conservation efforts should be directed towards minimizing anthropogenic activities that result in excess sedimentation in their critical spawning tributaries.
C1 [Budy, Phaedra] Utah State Univ, US Geol Survey, Utah Cooperat Fish & Wildlife Res Unit, Dept Watershed Sci, Logan, UT 84322 USA.
[Roper, Brett] US Forest Serv, Fish & Aquat Ecol Unit, Logan, UT 84321 USA.
RP Budy, P (reprint author), Utah State Univ, US Geol Survey, Utah Cooperat Fish & Wildlife Res Unit, Dept Watershed Sci, Logan, UT 84322 USA.
EM phaedra.budy@usu.edu
FU U.S. Forest Service, Utah Division of Wildlife Resources [F-47-R]
FX This research was primarily funded by the U.S. Forest Service, Utah
Division of Wildlife Resources, Project XII, Sport Fisheries Research,
Grant Number F-47-R, Segment 20 and in-kind support from the U.S.
Geological Survey, Utah Cooperative Fish and Wildlife Research Unit.
Special thanks to Gary Thiede for providing technical advice and
logistical oversight of our field crews, and graduate students in the
Fish Ecology Laboratory at Utah State University. Susan Durham provided
statistical advice and assistance and Christy Meredith assisted with GIS
and graphical issues. We would also like to thank David Koons and
Jeremiah Wood for intellectual and field contributions; a long list of
seasonal technicians also assisted with fieldwork. Any use of trade
product or firm names is for descriptive purposes only and does not
imply endorsement by the U.S. Government.
NR 57
TC 6
Z9 6
U1 2
U2 21
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0275-5947
J9 N AM J FISH MANAGE
JI North Am. J. Fish Manage.
PY 2012
VL 32
IS 3
BP 436
EP 449
DI 10.1080/02755947.2012.675945
PG 14
WC Fisheries
SC Fisheries
GA 951AQ
UT WOS:000304693400003
ER
PT J
AU Marcot, BG
Allen, CS
Morey, S
Shively, D
White, R
AF Marcot, Bruce G.
Allen, Chris S.
Morey, Steve
Shively, Dan
White, Rollie
TI An Expert Panel Approach to Assessing Potential Effects of Bull Trout
Reintroduction on Federally Listed Salmonids in the Clackamas River,
Oregon
SO NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT
LA English
DT Article
ID CONSERVATION; MANAGEMENT; MODELS; KNOWLEDGE; JUDGMENT; SYSTEM
AB The bull trout Salvelinus confluentus is an apex predator in native fish communities in the western USA and is listed as threatened under the U. S. Endangered Species Act (ESA). Restoration of this species has raised concerns over its potential predatory impacts on native fish fauna. We held a five-person expert panel to help determine potential impacts of reintroducing bull trout into the Clackamas River, northwest Oregon, on the viability of four anadromous salmonid populations that are listed as threatened under the ESA: spring and fall Chinook salmon Oncorhynchus tshawytscha, coho salmon O. kisutch, and winter steelhead O. mykiss. The panel session was rigorously structured and used a modified Delphi process with structured expert elicitation, disclosure, discussion, and brainstorming. Each panelist distributed 100 score points among seven categories of potential bull trout impact (from no impact to very high impact) on extinction probabilities for the anadromous salmonids. Results were provided by individual panelists rather than as a group consensus and were summarized as means and variations in scores to express the panelists' individual uncertainty, variability among the panelists, and expected differences among the affected salmonids. Score results suggested that panelists viewed the potential impact of bull trout as very low or moderately low for spring Chinook salmon, coho salmon, and winter steelhead and mostly none to very low for fall Chinook salmon. Panelists also provided 19 possible monitoring activities and 21 possible management actions for assessing potential impacts and taking remedial action if bull trout are found to have unacceptable adverse effects. Results of the panel were used by the U. S. Fish and Wildlife Service to help craft and execute a plan to reintroduce bull trout into the Clackamas River system under the ESA. This rigorous expert panel process can be used for a wide range of evaluations in situations where empirical data are sparse or ecological interactions are too complex for explicit analytic solution.
C1 [Marcot, Bruce G.] US Forest Serv, Pacific NW Res Stn, Portland, OR 97205 USA.
[Allen, Chris S.; White, Rollie] US Fish & Wildlife Serv, Oregon Fish & Wildlife Off, Portland, OR 97266 USA.
[Morey, Steve; Shively, Dan] US Fish & Wildlife Serv, Reg Off, Portland, OR 97232 USA.
RP Marcot, BG (reprint author), US Forest Serv, Pacific NW Res Stn, 620 SW Main St, Portland, OR 97205 USA.
EM brucem@spiritone.com
FU USFWS; U.S. Forest Service; Oregon Department of Fish and Wildlife; PGE;
NOAA-Fisheries; Confederated Tribes of the Warm Springs Reservation;
U.S. Geological Survey
FX Success of the workshop was largely due to the contributions and
participation of the five expert panelists-Dave Beauchamp, Jason Dunham,
Kathryn Kostow, Paul McElhany, and Michael Meeuwig-and the management
support provided by Chris Wheaton (Oregon Department of Fish and
Wildlife), Paul Henson and Miel Corbett (USFWS), and Gary Larson (U. S.
Forest Service). Agencies and institutions that sponsored and
contributed to the success of this workshop included the USFWS, U.S.
Forest Service, Oregon Department of Fish and Wildlife, PGE,
NOAA-Fisheries, Confederated Tribes of the Warm Springs Reservation, and
U.S. Geological Survey. We also extend our thanks to the following
invited speakers for their presentations: Todd Alsbury, Doug Cramer,
Dave Beauchamp, and Jason Dunham. A workshop final report (including the
full agenda, invitation letter, project question-and-answer sheet,
panelist explanatory notes, and other details) is available from the
senior author upon request.
NR 44
TC 11
Z9 11
U1 0
U2 21
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0275-5947
J9 N AM J FISH MANAGE
JI North Am. J. Fish Manage.
PY 2012
VL 32
IS 3
BP 450
EP 465
DI 10.1080/02755947.2012.675959
PG 16
WC Fisheries
SC Fisheries
GA 951AQ
UT WOS:000304693400004
ER
PT J
AU Anderson, DM
Winters, C
Estell, RE
Fredrickson, EL
Doniec, M
Detweiler, C
Rus, D
James, D
Nolen, B
AF Anderson, Dean M.
Winters, Craig
Estell, Rick E.
Fredrickson, Ed L.
Doniec, Marek
Detweiler, Carrick
Rus, Daniela
James, Darren
Nolen, Barbara
TI Characterising the spatial and temporal activities of free-ranging cows
from GPS data
SO RANGELAND JOURNAL
LA English
DT Article
DE foraging; geospatial data; livestock; travel; weaning behaviour
ID GLOBAL POSITIONING SYSTEM; ANIMAL BEHAVIOR; EARLY SEPARATION; ACTIVITY
SENSORS; TELEMETRY DATA; CATTLE; SELECTION; ACCURACY; MOVEMENT; PASTURE
AB Electronic tracking provides a unique way to document behaviour by cows on a continuous basis. Over 2 years 17 beef cows with calves were fitted with global positioning system (GPS) devices programmed to record uncorrected GPS locations at 1-s intervals in a semi-desert rangeland. Each cow was periodically observed during daylight hours and foraging, walking and stationary (standing/lying) activity times were recorded across days and individual cows to calculate a mean travel rate for each activity. Data without observers present were collected immediately preceding and following the abrupt weaning of calves at between 223 and 234 days of age to evaluate the potential of classifying various travel rates into foraging, walking and stationary activity. The three activities were further characterised within a 24-h period based on the sun's angle with respect to the horizon. Only data from cows whose equipment acquired >= 90% of the potential GPS positional data among consecutive days were analysed. Due to problems with the equipment, data from two cows in 2009 and two cows in 2011 met these criteria. The interval evaluated consisted of four 24-h periods before abrupt weaning and seven 24-h periods following weaning. Results suggested that uncorrected 1-s positional GPS data are satisfactory to classify the behaviour by free-ranging beef cows into foraging, walking and stationary activities. Furthermore, abrupt weaning caused cows to change their spatial and temporal behaviour across and within days. Overall, travel by cows increased post-weaning with subtle within-day behavioural changes. Further research will be required to fully understand the biological importance of spatio-temporal behaviour to optimise cattle and landscape management goals.
C1 [Anderson, Dean M.; Winters, Craig; Estell, Rick E.; James, Darren; Nolen, Barbara] USDA ARS Jornada Expt Range, Las Cruces, NM 88003 USA.
[Fredrickson, Ed L.] Eastern Kentucky Univ, Dept Agr, Richmond, KY 40475 USA.
[Doniec, Marek; Rus, Daniela] Comp Sci & Artificial Intelligence Lab, Cambridge, MA 02139 USA.
[Detweiler, Carrick] Univ Nebraska, Dept Comp Sci & Engn, Lincoln, NE 68588 USA.
RP Anderson, DM (reprint author), USDA ARS Jornada Expt Range, Las Cruces, NM 88003 USA.
EM deanders@nmsu.edu
FU NSF [IIS-0513628]
FX The use of animals in this research during the spring of 2009 and 2011
was approved under New Mexico State University's Institutional Animal
Care and Use Committee protocols 2007-001 and 2011-008. The authors wish
to express thanks to Mr Roy Libeau (retired) USDA-ARS, Jornada
Experimental Range, Mr Alfredo Gonzalez, USDA-ARS-JER and Mr Anthony
Aglieri, student technician. Financial assistance was provided in part
by NSF grant IIS-0513628.
NR 71
TC 13
Z9 13
U1 3
U2 36
PU CSIRO PUBLISHING
PI CLAYTON
PA UNIPARK, BLDG 1, LEVEL 1, 195 WELLINGTON RD, LOCKED BAG 10, CLAYTON, VIC
3168, AUSTRALIA
SN 1036-9872
EI 1834-7541
J9 RANGELAND J
JI Rangeland J.
PY 2012
VL 34
IS 2
BP 149
EP 161
DI 10.1071/RJ11062
PG 13
WC Ecology
SC Environmental Sciences & Ecology
GA 952DG
UT WOS:000304769700003
ER
PT J
AU McLain, R
Poe, M
Hurley, PT
Lecompte-Mastenbrook, J
Emery, MR
AF McLain, Rebecca
Poe, Melissa
Hurley, Patrick T.
Lecompte-Mastenbrook, Joyce
Emery, Marla R.
TI Producing edible landscapes in Seattle's urban forest
SO URBAN FORESTRY & URBAN GREENING
LA English
DT Article
DE Green infrastructure; Urban ecosystems; Urban food production; Urban
forestry; Urban planning
AB Over the next decades, green infrastructure initiatives such as tree planting campaigns, and ecological restoration will dramatically change the species composition, species distribution and structure of urban forests across the United States. These impending changes are accompanied by a demand for urban public spaces where people can engage in practices such as gleaning, gardening, and livestock production. This article analyzes the institutional framework that undergirds efforts in Seattle, Washington to normalize the production and use of edible landscapes. We focus attention on the role of grassroots fruit gleaning groups and highlight their bridging function between Seattle's agriculture and forestry policy arenas, creating an entry point for re-conceptualizing urban forests as sites of production. We conclude that a vision of urban forests as providers of goods as well as services may provide a more solid foundation for achieving urban sustainability than the current "hands off" approach to urban forest management. Gleaning and gathering in urban wild and cultivated landscapes provides opportunities for inhabitants to steward public natural resources and interact deeply with nature. (C) 2012 Elsevier GmbH. All rights reserved.
C1 [McLain, Rebecca; Poe, Melissa] Inst Culture & Ecol, Portland, OR 97228 USA.
[Hurley, Patrick T.] Ursinus Coll, Dept Environm Studies, Collegeville, PA USA.
[Lecompte-Mastenbrook, Joyce] Univ Washington, Dept Anthropol, Seattle, WA 98195 USA.
[Emery, Marla R.] US Forest Serv, USDA, NE Res Stn, Burlington, VT USA.
RP McLain, R (reprint author), Inst Culture & Ecol, POB 6688, Portland, OR 97228 USA.
EM mclain@ifcae.org
NR 49
TC 17
Z9 18
U1 7
U2 92
PU ELSEVIER GMBH, URBAN & FISCHER VERLAG
PI JENA
PA OFFICE JENA, P O BOX 100537, 07705 JENA, GERMANY
SN 1618-8667
J9 URBAN FOR URBAN GREE
JI Urban For. Urban Green.
PY 2012
VL 11
IS 2
BP 187
EP 194
DI 10.1016/j.ufug.2011.12.002
PG 8
WC Plant Sciences; Environmental Studies; Forestry; Urban Studies
SC Plant Sciences; Environmental Sciences & Ecology; Forestry; Urban
Studies
GA 950HS
UT WOS:000304640800011
ER
PT J
AU Durairaj, V
Clark, FD
Coon, CC
Huff, WE
Okimoto, R
Huff, GR
Rath, NC
AF Durairaj, V.
Clark, F. D.
Coon, C. C.
Huff, W. E.
Okimoto, R.
Huff, G. R.
Rath, N. C.
TI Effects of high fat diets or prednisolone treatment on femoral head
separation in chickens
SO BRITISH POULTRY SCIENCE
LA English
DT Article
ID DENSITY-LIPOPROTEIN CHOLESTEROL; BROILER-CHICKENS; GROWTH-PERFORMANCE;
EARLY NUTRITION; OSTEONECROSIS; POULTRY; MECHANISMS; BONE;
ABNORMALITIES; METABOLISM
AB 1. The effects of high fat diets and prednisolone treatment were studied to understand the etiology of femoral head separation (FHS) in fast growing broiler chickens. Dietary effects on production parameters such as growth, feed conversion ratio (FCR) and blood chemistry were also measured.
2. Three groups of chickens, consisting of 30 birds each, in two replicate pens, were fed isonitrogenous diets containing 40 (control), 60, or 80 g poultry fat supplements per kg feed. The birds were fed a starter diet containing the fat supplements for the first three weeks, then switched to a grower diet containing the same supplements for the rest of the experimental period. Two groups of birds were also raised with the control diets, but were administered either cholesterol or prednisolone intramuscularly at 30 and 32 days of age to evaluate their effects on FHS incidences.
3. The chickens were euthanised and necropsied at 37 d of age. The presence of femoral head weakness was determined by applying mild pressure on the pelvic joint to cause the growth plate to become detached from its articular cartilage in affected cases.
4. High fat diets did not change FHS incidences, but increased 28 d body weights (BW) and FCR. At 37 d of age the BW differences were not significant but the FCR (gain: feed ratio) remained higher in high fat fed groups. Prednisolone treatment, by contrast, resulted in decreased BW, decreased feed efficiency, increased FHS index, and elevated blood lipid levels.
5. The results suggest that high dietary fats do not affect FHS incidence in broilers. Prednisolone treatment causes hyperlipidaemia and increases FHS index, and may therefore provide a suitable experimental model of FHS pathogenesis in growing chickens.
C1 [Rath, N. C.] Univ Arkansas, ARS, Poultry Sci Ctr, USDA,Poultry Prod & Prod Safety Res Unit, Fayetteville, AR 72701 USA.
[Durairaj, V.; Clark, F. D.; Coon, C. C.] Univ Arkansas, Dept Poultry Sci, Fayetteville, AR 72701 USA.
[Okimoto, R.] Cobb Vantress Inc, Siloam Springs, AR USA.
RP Rath, NC (reprint author), Univ Arkansas, ARS, Poultry Sci Ctr, USDA,Poultry Prod & Prod Safety Res Unit, Fayetteville, AR 72701 USA.
EM narayan.rath@ars.usda.gov
FU Cobb-Vantress Inc. (Siloam Springs, AR)
FX We thank Scott Zornes, Sonia Tsai, and Dana Bassi for their technical
assistance. This study was partly supported by a grant from
Cobb-Vantress Inc. (Siloam Springs, AR).
NR 39
TC 4
Z9 4
U1 0
U2 5
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0007-1668
J9 BRIT POULTRY SCI
JI Br. Poult. Sci.
PY 2012
VL 53
IS 2
BP 198
EP 203
DI 10.1080/00071668.2012.675429
PG 6
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 949RF
UT WOS:000304592800007
PM 22646785
ER
PT S
AU Yadav, MP
Moreau, RA
Hick, KB
AF Yadav, M. P.
Moreau, R. A.
Hick, K. B.
BE Williams, PA
Phillips, GO
TI PRODUCTION OF CORN FIBER GUM UNDER CONDITIONS THAT RETAIN ITS FUNCTIONAL
COMPONENTS
SO GUMS AND STABILISERS FOR THE FOOD INDUSTRY 16
SE Royal Society of Chemistry Special Publications
LA English
DT Proceedings Paper
CT 16th Gums and Stabilisers for the Food Industry Conference
CY JUN 28-JUL 01, 2011
CL Wageningen, NETHERLANDS
SP Biopolymer Solut, Campden BRI, Cargill, CP Kelco, Cyber Colloids, Danisco, Elsevier, Kerry Food & Beverage, FMC, Mars, Natl Starch & Chen, Pepsico, Phillips Hydrocolloids Res Ctr, Unilever, Woodhead Publishing Ltd
ID MAIZE BRAN; EMULSIFYING PROPERTIES; ACIDS; EXTRACTION; IDENTIFICATION;
HEMICELLULOSE; HYDROLYSIS; WHEAT; OIL; RYE
C1 [Yadav, M. P.; Moreau, R. A.; Hick, K. B.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Yadav, MP (reprint author), ARS, Eastern Reg Res Ctr, USDA, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM madhav.yadav@ars.usda.gov
OI Moreau, Robert/0000-0002-8166-8322
NR 23
TC 0
Z9 0
U1 0
U2 3
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, CAMBRIDGE CB4 4WF, CAMBS, ENGLAND
SN 0260-6291
BN 978-1-84973-455-4
J9 ROY SOC CH
PY 2012
IS 335
BP 59
EP 66
PG 8
WC Food Science & Technology
SC Food Science & Technology
GA BAK58
UT WOS:000304439100006
ER
PT S
AU Leakey, ADB
Ainsworth, EA
Bernacchi, CJ
Zhu, XG
Long, SP
Ort, DR
AF Leakey, Andrew D. B.
Ainsworth, Elizabeth A.
Bernacchi, Carl J.
Zhu, Xinguang
Long, Stephen P.
Ort, Donald R.
BE EatonRye, JJ
Tripathy, BC
Sharkey, TD
TI Photosynthesis in a CO2-Rich Atmosphere
SO PHOTOSYNTHESIS: PLASTID BIOLOGY, ENERGY CONVERSION AND CARBON
ASSIMILATION
SE Advances in Photosynthesis and Respiration
LA English
DT Article; Book Chapter
ID AIR CO2 ENRICHMENT; ELEVATED CARBON-DIOXIDE; LONG-TERM EXPOSURE;
PROGRESSIVE NITROGEN LIMITATION; LIQUIDAMBAR-STYRACIFLUA L.; RUBISCO
SPECIFICITY FACTOR; WATER-USE EFFICIENCY; C-4 CEREAL SORGHUM; LEAF
GAS-EXCHANGE; OPEN-TOP CHAMBERS
AB The concentration of CO2 ([CO2]) in the atmosphere is projected to exceed 550 ppm by 2050. C-3 plants respond directly to growth at elevated [CO2] by stimulation of photosynthesis and reduced stomatal conductance. The stimulation of photosynthesis is the result of increased velocity of carboxylation of CO2 by Rubisco and inhibition of the competing oxygenation reaction. Long-term exposure of C-3 plants to elevated [CO2] can also lead to photosynthetic acclimation in which allocation of resources to components of the photosynthetic machinery, including Rubisco, is altered to optimize metabolic efficiency. The decrease in stomatal conductance that occurs in all plants at elevated [CO2] can reduce canopy water use and indirectly enhance carbon gain by ameliorating drought stress. However, canopy micrometeorology constrains reductions in water use at the whole-plant level compared to the leaf level. C-4 photosynthesis is not directly stimulated by free-air concentration enrichment (FACE) of CO2 in the field. However, reduced water use can indirectly enhance carbon gain by ameliorating stress in times and places of drought. There are commonalities and important distinctions between plant responses to growth at elevated [CO2] under FACE versus controlled environment chambers. In FACE experiments: (1) the enhancement of photosynthesis and productivity by elevated [CO2] is sustained over time; (2) the decrease in carboxylation capacity and leaf N characteristic of photosynthetic acclimation to elevated [CO2] is consistent with an optimization of metabolic efficiency rather than a general down-regulation of metabolism, and (3) the enhancement effect of elevated [CO2] is greatest for photosynthesis, intermediate for biomass accumulation, and lowest for crop yield. Plant responses to elevated [CO2] have the potential to influence the global carbon cycle and climate in the future, but the complexity of scaling from the leaf to whole plant, canopy, ecosystem and biosphere make it unclear to what extent this will be realized. Elevated [CO2] will probably offset some of the future losses in crop yield caused by increased temperature and drought stress, but not to the extent previously thought. Expanding FACE experimentation to consider multiple elements of global change across a wider geographic range and more ecosystem types should be a priority if we are to minimize the problems, and maximize the benefits, of climate change impacts on ecosystem good and services.
C1 [Ort, Donald R.] Univ Illinois, USDA ARS, Dept Plant Biol, Dept Crop Sci, Urbana, IL 61801 USA.
[Long, Stephen P.] Univ Illinois, Inst Genom Biol, Dept Crop Sci, Urbana, IL 61801 USA.
[Zhu, Xinguang] Chinese Acad Sci, Plant Syst Biol Grp, Inst Computat Biol, Max Planck Soc Germany, Shanghai, Peoples R China.
RP Ort, DR (reprint author), Univ Illinois, USDA ARS, Dept Plant Biol, Dept Crop Sci, Urbana, IL 61801 USA.
EM d-ort@illinois.edu
RI Long, Stephen/A-2488-2008; Leakey, Andrew/Q-9889-2016
OI Long, Stephen/0000-0002-8501-7164; Leakey, Andrew/0000-0001-6251-024X
NR 223
TC 12
Z9 12
U1 1
U2 58
PU SPRINGER
PI DORDRECHT
PA PO BOX 17, 3300 AA DORDRECHT, NETHERLANDS
SN 1572-0233
BN 978-94-007-1578-3
J9 ADV PHOTOSYNTH RESP
JI Adv. Photo. Respirat.
PY 2012
VL 34
BP 733
EP 768
DI 10.1007/978-94-007-1579-0_29
D2 10.1007/978-94-007-1579-0
PG 36
WC Biochemistry & Molecular Biology; Plant Sciences
SC Biochemistry & Molecular Biology; Plant Sciences
GA BAG91
UT WOS:000304125200029
ER
PT J
AU Jansky, S
Hamernik, A
Cai, X
AF Jansky, S.
Hamernik, A.
Cai, X.
TI Rapid cycling with true potato seed
SO SEED SCIENCE AND TECHNOLOGY
LA English
DT Article
ID TUBER DORMANCY; SOLANUM; GERMINATION; QUALITY; STORAGE; TEMPERATURE;
GIBBERELLIN; MATURATION; GENETICS; YIELD
AB Rapid generation cycling via true seed production can increase the efficiency of potato breeding programmes and genetics studies. This study was carried out to determine the fruit ripening and seed treatment conditions needed for generating true potato seed (TPS) with a high germination rate in a short period of time. The speed of germination and the total final percent germination of TPS derived from Solanum tuberosum was faster and higher than that derived from the wild species S. chacoense. Seed germination was enhanced when TPS was sown without drying and after treatment with gibberellic acid (GA(3)). The development of TPS in fruit on the vine for three weeks and then off the vine for two weeks is recommended for rapid cycling of TPS.
C1 [Jansky, S.; Cai, X.] Univ Wisconsin, Dept Hort, Madison, WI 53705 USA.
[Jansky, S.; Hamernik, A.] ARS, USDA, Madison, WI 53705 USA.
[Cai, X.] Huazhong Agr Univ, Coll Hort & Forestry Sci, Wuhan 430070, Peoples R China.
RP Cai, X (reprint author), Univ Wisconsin, Dept Hort, Madison, WI 53705 USA.
EM shjansky@wisc.edu; hamernik@facstaff.wisc.edu;
caixingkui@webmail.hzau.edu.cn
NR 23
TC 4
Z9 4
U1 1
U2 11
PU ISTA-INT SEED TESTING ASSOC
PI BASSERSDORF
PA ZUERICHSTR 50, PO BOX 308, CH-8303 BASSERSDORF, SWITZERLAND
SN 0251-0952
J9 SEED SCI TECHNOL
JI Seed Sci. Technol.
PY 2012
VL 40
IS 1
BP 43
EP 50
PG 8
WC Agronomy; Plant Sciences; Horticulture
SC Agriculture; Plant Sciences
GA 948RD
UT WOS:000304519400005
ER
PT J
AU Chen, Y
Fan, YM
Gao, JM
Stark, NM
AF Chen, Yao
Fan, Yongming
Gao, Jianmin
Stark, Nicole M.
TI THE EFFECT OF HEAT TREATMENT ON THE CHEMICAL AND COLOR CHANGE OF BLACK
LOCUST (ROBINIA PSEUDOACACIA) WOOD FLOUR
SO BIORESOURCES
LA English
DT Article
DE Heat treatment; Chemical changes; Discoloration; Wood; DRUV; FTIR-ATR
ID HIGH-TEMPERATURE; TREATED WOOD; LIGNIN; FTIR; CONDENSATION;
SPECTROSCOPY; EXTRACTIVES; HARDWOODS; SOFTWOOD; SPECTRA
AB The aim of this study was to investigate the effects of oxygen and moisture content (MC) on the chemical and color changes of black locust (Robinia pseudoacacia) wood during heat treatment. The wood flour was conditioned to different initial MCs and heated for 24 h at a constant temperature of 120 degrees C in either oxygen or nitrogen atmosphere. The pH values and chromaticity indexes were examined. Diffuse reflectance UV-Vis (DRUV) and Fourier transform infrared (FTIR) spectra were used to characterize the changes of chromophores upon heating. The study demonstrated that the pH values decreased after heat treatment, and it was lower when the heat treated was in oxygen than in nitrogen. The L* decreased significantly, while a* and b* increased. The total color difference Delta E* increased with increasing initial MC until a plateau was reached after 30% MC. The color change was greater in oxygen than in nitrogen. The hydroxyl groups decreased after heat treatment. The releases of acid and formation of quinoid compounds and carboxylic groups during heat treatment were confirmed. Discoloration of wood is due mainly to the condensation and oxidation reactions, which are accelerated by oxygen. Higher MCs are required to obtain the greatest color change of wood in inert atmosphere.
C1 [Chen, Yao; Fan, Yongming; Gao, Jianmin] Beijing Forestry Univ, Coll Mat Sci & Technol, Beijing 100083, Peoples R China.
[Stark, Nicole M.] ARS, USDA, Forest Prod Lab, Madison, WI 53726 USA.
RP Fan, YM (reprint author), Beijing Forestry Univ, Coll Mat Sci & Technol, Beijing 100083, Peoples R China.
EM fanym@bjfu.edu.cn
FU National Natural Science Foundation of China [31070490]
FX The National Natural Science Foundation of China is thanked for
financial support to undertake this research (Series number of the
project: 31070490).
NR 45
TC 25
Z9 25
U1 1
U2 11
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 1
BP 1157
EP 1170
PG 14
WC Materials Science, Paper & Wood
SC Materials Science
GA 942JV
UT WOS:000304041200092
ER
PT J
AU Segerholm, BK
Ibach, RE
Walinder, MEP
AF Segerholm, B. Kristoffer
Ibach, Rebecca E.
Walinder, Magnus E. P.
TI MOISTURE SORPTION IN ARTIFICIALLY AGED WOOD-PLASTIC COMPOSITES
SO BIORESOURCES
LA English
DT Article
DE Wood-plastic composites; Acetylation; Artificial ageing; Moisture
sorption; Diffusion; High-density polyethylene; Scanning electron
microscopy
AB Moisture sorption in wood-plastic composites (WPCs) affects their durability and dimensional stability. In certain outdoor exposures, the moisture properties of WPCs are altered due to e. g. cracks induced by swelling and shrinkage of the components, as well as UV degradation or biological attack. The aim of this work was to study the effect of different artificial ageing routes on the moisture sorption properties of WPCs. Extruded WPCs were prepared with either unmodified or acetylated wood and recycled high-density polyethylene (HDPE). The WPC samples were artificially aged involving water soaking, artificial weathering, and white-or brown-rot decay in different combinations. After the ageing, the samples were conditioned in either 65% or 90% relative humidity (RH) until equilibrium moisture content was reached. A dynamic moisture sorption analyzer was used to monitor the sorption rate of samples subjected to a climate change from 65% to 90% RH. Scanning electron microscopy was used to study the surface morphology of the aged composites. Results showed that the artificial weathering caused cracking of the HDPE matrix at the composite surface, as well as a wood-matrix debonding, resulting in an increased moisture sorption rate. The WPC samples subjected to white-rot decay showed the highest moisture sorption rate.
C1 [Segerholm, B. Kristoffer; Walinder, Magnus E. P.] KTH Royal Inst Technol, Div Bldg Mat, SE-10044 Stockholm, Sweden.
[Segerholm, B. Kristoffer; Walinder, Magnus E. P.] SP Tech Res Inst Sweden, SE-11486 Stockholm, Sweden.
[Ibach, Rebecca E.] Forest Prod Lab, Madison, WI 53726 USA.
RP Segerholm, BK (reprint author), KTH Royal Inst Technol, Div Bldg Mat, SE-10044 Stockholm, Sweden.
EM kristoffer.segerholm@byv.kth.se
OI Segerholm, Kristoffer/0000-0001-7014-6230
FU EcoBuild (VINNOVA, Swedish Foundation for Strategic Research and the
Knowledge Foundation)
FX Financial support from EcoBuild (VINNOVA, Swedish Foundation for
Strategic Research and the Knowledge Foundation) is gratefully
acknowledged.
NR 18
TC 15
Z9 15
U1 1
U2 12
PU NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI
PI RALEIGH
PA CAMPUS BOX 8005, RALEIGH, NC 27695-8005 USA
SN 1930-2126
J9 BIORESOURCES
JI BioResources
PY 2012
VL 7
IS 1
BP 1283
EP 1293
PG 11
WC Materials Science, Paper & Wood
SC Materials Science
GA 942JV
UT WOS:000304041200101
ER
PT J
AU Brauer, D
Brauer, DE
Looper, ML
Burner, D
Pote, DH
Moore, PA
AF Brauer, David
Brauer, Diana E.
Looper, Mike L.
Burner, David
Pote, Dan H.
Moore, Philip A., Jr.
TI Effects of the Establishment of a Forested Riparian Buffer and Grazing
on Soil Characteristics
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Conservation buffers; soil bulk density; soil phosphorus
ID SURFACE RUNOFF; POULTRY LITTER; SOUTH-AUSTRALIA; DAIRY PASTURE;
UNITED-STATES; PHOSPHORUS; NITROGEN; QUALITY; MANAGEMENT; SEDIMENT
AB Poultry-litter applications to pastures can result in relatively high soil phosphorus (P) levels, which in turn can contaminate runoff and degrade surface water quality. New management protocols for temperate grasslands are needed to reduce the risk of P transport to surface water. The effects of three land-use treatments on soil characteristics related to P runoff were investigated using small watersheds with 8% slope near Booneville, Arkansas, U.S. The land use treatments were (1) haying of bermudagrass overseeded with winter annual forage (ryegrass or rye), (2) rotationally grazed, and (3) rotationally grazed with 12-m-wide tree buffer on the downhill portion of the plot. Plots and trees were established in 2003. Annual spring application of poultry litter (5.6 Mg ha(-1)) to the hayed or grazed portions of the plots was started in 2004. Grazing treatments were imposed shortly thereafter. By the summer of 2008 (4 years of treatments), soil concentrations of Bray 1-extractable P and soluble reactive P had increased significantly from approximately 40 and 4 mg P kg(-1) soil, respectively, to more than 200 and 30 mg P kg(-1) soil, respectively, in the areas of the plots receiving poultry litter. Soil bulk density in the portions of the plots being grazed had increased significantly also. The soil collected from the forested riparian buffer in 2008 had similar soil bulk densities and Bray 1-extractable P concentrations as the plots did in 2003 before treatments were imposed.
C1 [Brauer, Diana E.; Looper, Mike L.; Burner, David; Pote, Dan H.] ARS, Dale Bumpers Small Farms Res Ctr, USDA, Booneville, AR USA.
[Moore, Philip A., Jr.] ARS, Poultry Prod & Prod Safety Res Unit, USDA, Fayetteville, AR USA.
[Brauer, David] ARS, Conservat & Prod Lab, USDA, Bushland, TX 79012 USA.
RP Brauer, D (reprint author), ARS, CPRL, USDA, 2300 Expt Stn Dr,PO Drawer 10, Bushland, TX 79012 USA.
EM david.brauer@ars.usda.gov
NR 33
TC 0
Z9 0
U1 0
U2 9
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 9
BP 1332
EP 1343
DI 10.1080/00103624.2012.666307
PG 12
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 945MK
UT WOS:000304277700008
ER
PT J
AU Fageria, NK
Baligar, VC
Melo, LC
de Oliveira, JP
AF Fageria, N. K.
Baligar, V. C.
Melo, L. C.
de Oliveira, J. P.
TI Differential Soil Acidity Tolerance of Dry Bean Genotypes
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Grain harvest index; grain yield; Phaseolus vulgaris L; shoot dry weight
ID LOWLAND RICE; NUTRIENT MANAGEMENT; USE-EFFICIENCY; YIELD
AB Soil acidity is a major yield-limiting factors for bean production in the tropical regions. Using soil acidity-tolerant genotypes is an important strategy in improving bean yields and reducing cost of production. A greenhouse experiment was conducted with the objective of evaluating 20 dry bean genotypes for their tolerance to soil acidity constraints. An Inceptisol soil was amended with dolomitic lime (2 g dolomitic lime kg(-1) soil) to achieve low acidity (pH = 5.9) and without lime (zero lime kg(-1) soil,) to achieve high acidity (pH = 4.8) levels to evaluate bean genotypes. At both acidity levels, genotypes differed significantly in shoot dry weight and grain yield. Shoot dry weight and grain yield were significantly decreased at the high acidity level compared to the low acidity level. Grain yield was more sensitive to soil acidity than shoot dry weight. Hence, grain yield was used in determination of tolerance index (GTI) to differentiate the range of soil acidity tolerance among bean genotypes. Based on a GTI value, 55% of the genotypes were classified as tolerant, 40% classified as moderately tolerant, and the remaining were grouped as susceptible to soil acidity. The genotype CNFC 10410 was most tolerant and genotype CNFP 10120 was most susceptible to soil acidity. Number of pods and grain harvest index were significantly and positively associated with grain yield. The improvement in grain yield in low acidity may be related to reduction of toxic levels of soil aluminum (Al3+) and hydrogen (H+) ions by lime addition. At harvest, soil extractable phosphorus (P) and potassium (K) increased with the reduction of soil acidity, and this might have contributed to the better nutrition of beans and lead to higher growth.
C1 [Fageria, N. K.; Melo, L. C.; de Oliveira, J. P.] Empresa Brasileira Pesquisa Agropecuaria EMBRAPA, Natl Rice & Bean Res Ctr, BR-75375000 Santo Antonio De Goias, Go, Brazil.
[Baligar, V. C.] ARS, USDA, Beltsville Agr Res Ctr, Beltsville, MD USA.
RP Fageria, NK (reprint author), Empresa Brasileira Pesquisa Agropecuaria EMBRAPA, Natl Rice & Bean Res Ctr, Caixa Postal 179, BR-75375000 Santo Antonio De Goias, Go, Brazil.
EM fageria@cnpaf.embrapa.br
NR 26
TC 0
Z9 0
U1 2
U2 8
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 11
BP 1523
EP 1531
DI 10.1080/00103624.2012.675389
PG 9
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 946CT
UT WOS:000304327800003
ER
PT J
AU Yang, Y
Timlin, DJ
Fleisher, DH
Lokhande, SB
Chun, JA
Kim, SH
Staver, K
Reddy, VR
AF Yang, Yang
Timlin, Dennis J.
Fleisher, David H.
Lokhande, Suresh B.
Chun, Jong A.
Kim, Soo-Hyung
Staver, Kenneth
Reddy, V. R.
TI Nitrogen Concentration and Dry-Matter Accumulation in Maize Crop:
Assessing Maize Nitrogen Status with an Allometric Function and a
Chlorophyll Meter
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE Chlorophyll meter; growth; leaf; maize; nitrogen status diagnosis
ID ZEA-MAYS L.; LEAF NITROGEN; DILUTION CURVE; CORN; IRRADIANCE; EVALUATE;
WHEAT; FIELD
AB The ability to determine the optimal nitrogen (N) content in maize plants needed to obtain maximum growth is important to the management of the crop. It has been shown that N content declines as a function of aboveground biomass accumulation (W): [N] = 3.4W(-0.37). The goal of this study is to evaluate the applicability of relating chlorophyll meter readings with the optimal N content relationship to provide a tool for whole-plant N-status diagnosis in maize without the necessity of measuring N content. Biomass of shoot and specific organs, N concentration, and chlorophyll meter measurement of specific leaves were measured over several sites and years. Nitrogen-concentration measurements indicated that whole-plant N status can be represented by the N concentration of the topmost fully expanded leaf. A quantitative relationship between N concentration and chlorophyll meter measurement on the uppermost expanded leaf was established and validated.
C1 [Yang, Yang; Timlin, Dennis J.; Fleisher, David H.; Reddy, V. R.] ARS, USDA, Crop Syst & Global Change Lab, Beltsville, MD 20705 USA.
[Yang, Yang] DOW Agrosci, Indianapolis, IN USA.
[Lokhande, Suresh B.] Mississippi State Univ, Starkville, MS USA.
[Chun, Jong A.] APEC Climate Ctr, U Dong, Haeundae Gu Bus, South Korea.
[Kim, Soo-Hyung] Univ Washington, Seattle, WA 98195 USA.
[Staver, Kenneth] Univ Maryland, Wye Res Ctr, Queenstown, MD USA.
RP Timlin, DJ (reprint author), ARS, USDA, Crop Syst & Global Change Lab, Beltsville, MD 20705 USA.
EM Dennis.Timlin@ars.usda.gov
RI Kim, Soo-Hyung/A-3012-2009
OI Kim, Soo-Hyung/0000-0003-3879-4080
NR 29
TC 4
Z9 4
U1 2
U2 18
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0010-3624
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PY 2012
VL 43
IS 11
BP 1563
EP 1575
DI 10.1080/00103624.2012.675393
PG 13
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA 946CT
UT WOS:000304327800007
ER
PT J
AU Shea, C
Jamieson, B
Birkeland, KW
AF Shea, C.
Jamieson, B.
Birkeland, K. W.
TI Use of a thermal imager for snow pit temperatures
SO CRYOSPHERE
LA English
DT Article
ID LAYER FORMATION; MODEL; AVALANCHES; CRYSTALS; GRADIENT
AB Weak snow of interest to avalanche forecasting often forms and changes as thin layers. Thermometers, the current field technology for measuring the temperature gradients across such layers - and for thus estimating the expected vapour flux and future type of crystal metamorphism - are difficult to use at distances shorter than 1 cm. In contrast, a thermal imager can provide thousands of simultaneous temperature measurements across small distances with better accuracy. However, a thermal imager only senses the exposed surface, complicating its methods for access and accuracy of buried temperatures. This paper presents methods for exposing buried layers on pit walls and using a thermal imager to measure temperatures on these walls, correct for lens effects with snow, adjust temperature gradients, adjust time exposed, and calculate temperature gradients over millimetre distances. We find lens error on temperature gradients to be on the order of 0.03 A degrees C between image centre and corners. We find temperature gradient change over time to usually decrease - as expected with atmospheric equalization as a strong effect. Case studies including thermal images and visual macro photographs of crystals, collected during the 2010-2011 winter, demonstrate large temperature differences over millimetre-scale distances that are consistent with observed kinetic metamorphism. Further study is needed to use absolute temperatures independently of supporting gradient data.
C1 [Shea, C.; Jamieson, B.] Univ Calgary, Dept Geosci, Calgary, AB, Canada.
[Jamieson, B.] Univ Calgary, Dept Civil Engn, Calgary, AB T2N 1N4, Canada.
[Birkeland, K. W.] US Forest Serv, USDA, Natl Avalanche Ctr, Bozeman, MT USA.
RP Shea, C (reprint author), Univ Calgary, Dept Geosci, Calgary, AB, Canada.
EM cashea@ucalgary.ca
FU Natural Sciences and Engineering Research Council of Canada; HeliCat
Canada; Canadian Avalanche Association; Mike Wiegele Helicopter Skiing;
Teck Mining Company; Canada West Ski Areas Association; Association of
Canadian Mountain Guides; Back-country Lodges of British Columbia;
Canadian Ski Guides Association
FX For financial support, the authors thank the Natural Sciences and
Engineering Research Council of Canada, HeliCat Canada, the Canadian
Avalanche Association, Mike Wiegele Helicopter Skiing, Teck Mining
Company, Canada West Ski Areas Association, the Association of Canadian
Mountain Guides, Back-country Lodges of British Columbia, and the
Canadian Ski Guides Association.
NR 26
TC 5
Z9 5
U1 1
U2 10
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1994-0416
EI 1994-0424
J9 CRYOSPHERE
JI Cryosphere
PY 2012
VL 6
IS 2
BP 287
EP 299
DI 10.5194/tc-6-287-2012
PG 13
WC Geography, Physical; Geosciences, Multidisciplinary
SC Physical Geography; Geology
GA 942QN
UT WOS:000304062100004
ER
PT J
AU Prakash, B
Pan, ZL
AF Prakash, Bhagwati
Pan, Zhongli
TI Effect of Geometry of Rice Kernels on Drying Modeling Results
SO DRYING TECHNOLOGY
LA English
DT Article
DE Grain shape; Mathematical modeling; Rice; Shrinkage
ID FINITE-ELEMENT SIMULATION; ROUGH RICE; MOISTURE DIFFUSIVITY; COMPONENTS;
GRAIN
AB Geometry of rice grain is commonly represented by sphere, spheroid, or ellipsoid shapes in the drying models. Models using simpler shapes are easy to solve mathematically; however, deviation from the true grain shape might lead to large errors in predictions of drying characteristics such as moisture content (MC) and moisture gradients (MG). This research was undertaken to determine the impact of such shape considerations on prediction of drying characteristics. Impact of shrinkage of grains caused by drying was also investigated. Three separate mathematical models, each representing rice grain by sphere, spheroid, and ellipsoid shapes, were developed to describe the drying process. These models were solved by the finite element method using Comsol Multiphysics (R) simulation program. Drying simulations showed important differences in predictions of MC and MG in these three models. The sphere-shaped model predicted a slower drying than the spheroid-and ellipsoid-shaped models, whose MC predictions were similar. In all three models, maximum moisture gradients (MMG) were observed along the shortest axis in the bran region. During drying, MMG increases, reaches a peak, and then decreases. Magnitude and onset of peak of MMG were different in the three models. These differences in drying predictions among the three models make it important to use the appropriate shape to represent the rice grain in mathematical models. Ellipsoid shape, which closely resembles geometry of the rice grain, was found to be the most suitable. Reliable MG predictions from such ellipsoid-shaped models could be correlated to grain fissuring, which thereafter can be employed to optimize the drying process. The impact of shrinkage of rice grains during drying on model predictions is very small. In any drying simulation, maximum error due to neglecting shrinkage would be less than 5% of total moisture loss value.
C1 [Prakash, Bhagwati; Pan, Zhongli] Univ Calif Davis, Dept Biol & Agr Engn, Davis, CA 95616 USA.
[Pan, Zhongli] ARS, Proc Foods Res Unit, Western Reg Res Ctr, USDA, Albany, CA USA.
RP Pan, ZL (reprint author), Univ Calif Davis, Dept Biol & Agr Engn, 1 Shields Ave, Davis, CA 95616 USA.
EM zhongli.pan@ars.usda.gov
FU California Rice Research Board
FX We thank the California Rice Research Board for providing partial
financial support for this research.
NR 25
TC 12
Z9 12
U1 1
U2 15
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0737-3937
J9 DRY TECHNOL
JI Dry. Technol.
PY 2012
VL 30
IS 8
BP 801
EP 807
DI 10.1080/07373937.2012.665112
PG 7
WC Engineering, Chemical; Engineering, Mechanical
SC Engineering
GA 945WI
UT WOS:000304306700001
ER
PT J
AU Maragos, CM
AF Maragos, Chris M.
TI Zearalenone occurrence in surface waters in central Illinois, USA
SO FOOD ADDITIVES & CONTAMINANTS PART B-SURVEILLANCE
LA English
DT Article
DE zearalenone; resorcylic acid lactones; water; environment
ID ENDOCRINE-DISRUPTING CHEMICALS; AQUEOUS ENVIRONMENTAL-SAMPLES;
ESTROGENIC MYCOTOXIN; QUANTIFICATION; PHYTOESTROGENS; METABOLITES;
EXPOSURE; STREAMS; SEWAGE; FISH
AB Zearalenone (ZEN) is an estrogenic secondary metabolite produced by certain fungi that commonly infest important cereal crops. The ability of ZEN to move from contaminated crops to surface waters has been demonstrated previously. This article reports the development and application of a method for the measurement of ZEN in surface waters from the central part of Illinois, USA. The method uses a cleanup procedure based on tandem reverse-phase disks and immunoaffinity columns, separation by liquid chromatography and detection by a combination of absorbance and fluorescence. ZEN was frequently found in samples of waters from lakes, streams and a field ditch. Although the frequency of detection was high (32% above the limit of detection, 0.4 ng L-1), the levels found were low, with the highest sample having 5.7 ng L-1. Therefore, although fungi can contribute to the exposure to environmental estrogens, the contribution from zearalenone in water is likely small.
C1 ARS, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL USA.
RP Maragos, CM (reprint author), ARS, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL USA.
EM chris.maragos@ars.usda.gov
NR 33
TC 8
Z9 8
U1 0
U2 16
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1939-3210
J9 FOOD ADDIT CONTAM B
JI Food Addit. Contam. Part B-Surveill.
PY 2012
VL 5
IS 1
BP 55
EP 64
DI 10.1080/19393210.2012.659764
PG 10
WC Chemistry, Applied; Food Science & Technology; Toxicology
SC Chemistry; Food Science & Technology; Toxicology
GA 947TS
UT WOS:000304454500010
PM 24779696
ER
PT J
AU Poinar, G
Thomas, DB
AF Poinar, George, Jr.
Thomas, Donald B.
TI A stink bug, Edessa protera sp n. (Pentatomidae: Edessinae) in Mexican
amber
SO HISTORICAL BIOLOGY
LA English
DT Article
DE stink bug; Pentatomidae; Mexican amber; Tertiary fossil
AB A new species of stink bug, Edessa protera sp. n. (Hemiptera: Pentatomidae: Edessinae) is described from Mexican amber. Diagnostic characters include: an anterior thin but strongly carinate mesosternum, a scutellum with a long tongue and obtuse apex, alternate connexiva and the configuration of the terminalia. This is the first description of a fossil pentatomid in amber and the first fossil stink bug from the Neotropics.
C1 [Poinar, George, Jr.] Oregon State Univ, Dept Zool, Corvallis, OR 97331 USA.
[Thomas, Donald B.] USDA ARS, Subtrop Agr Res Ctr, Weslaco, TX 78596 USA.
RP Poinar, G (reprint author), Oregon State Univ, Dept Zool, Corvallis, OR 97331 USA.
EM poinarg@science.oregonstate.edu
NR 21
TC 0
Z9 0
U1 0
U2 2
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0891-2963
J9 HIST BIOL
JI Hist. Biol.
PY 2012
VL 24
IS 2
BP 207
EP 211
DI 10.1080/08912963.2011.602403
PG 5
WC Biology; Paleontology
SC Life Sciences & Biomedicine - Other Topics; Paleontology
GA 948CO
UT WOS:000304481400006
ER
PT J
AU Schmer, MR
Hanson, JD
Johnson, HA
AF Schmer, Marty R.
Hanson, Jon D.
Johnson, Holly A.
TI SWITCHGRASS AND INTERMEDIATE WHEATGRASS ABOVEGROUND AND BELOWGROUND
RESPONSE TO NITROGEN AND CALCIUM
SO JOURNAL OF PLANT NUTRITION
LA English
DT Article
DE switchgrass; intermediate wheatgrass; calcium; nitrogen; forage quality;
bioenergy
ID DETERGENT FIBER ANALYSIS; BIOMASS YIELD; CELL-WALL; UNITED-STATES; SOIL
CARBON; NUTRIENT; REGISTRATION; CONVERSION; GRASSES; GROWTH
AB Calcium (Ca) and nitrogen (N) treatments (2, 8, and 32 mg L-1) were investigated on above-ground and belowground growth of switchgrass (Panicum virgatum L.) and intermediate wheatgrass [Thinopyrum intermedium (Host) Barkworth & D.R. Dewey] in a greenhouse experiment. Switchgrass (cultivars 'Sunburst' and 'Dacotah'), and intermediate wheatgrass (cultivar 'Reliant') aboveground and belowground biomass were harvested and analyzed to determine total biomass, macronutrient concentrations, and forage quality. Intermediate wheatgrass biomass followed a positive response to increasing N and Ca while switchgrass response to N and Ca treatments varied by cultivar. Increased Ca supplementation rates from 2 mg L to 32 mg L-1 increased aboveground Ca concentrations of 113% and 257% for switchgrass and intermediate wheatgrass, respectively. Calcium had little impact on measured cell wall characteristics with the exception of hemicellulose content in intermediate wheatgrass. Further investigation on intermediate wheatgrass yield response to Ca under field conditions is warranted.
C1 [Schmer, Marty R.; Hanson, Jon D.; Johnson, Holly A.] ARS, USDA, No Great Plains Res Lab, Mandan, ND 58554 USA.
RP Schmer, MR (reprint author), ARS, USDA, No Great Plains Res Lab, POB 459, Mandan, ND 58554 USA.
EM marty.schmer@ars.usda.gov
FU United States Department of Energy [DE-A105-900R21954]
FX This research was conducted in cooperation with USDA-ARS, Grain, Forage,
and Bioenergy Research Unit Lincoln, NE as part of Project
DE-A105-900R21954 funded by the United States Department of Energy. We
thank Becky Wald and Tony Fleck for their invaluable work in laboratory
analyses. USDA is an equal opportunity provider and employer. Trade and
company names or commercial products is solely for the purpose of
providing specific information and does not imply recommendation of
endorsement by the U.S. Department of Agriculture.
NR 50
TC 0
Z9 0
U1 2
U2 12
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0190-4167
J9 J PLANT NUTR
JI J. Plant Nutr.
PY 2012
VL 35
IS 7
BP 1065
EP 1079
DI 10.1080/01904167.2012.671409
PG 15
WC Plant Sciences
SC Plant Sciences
GA 946AK
UT WOS:000304319800007
ER
PT J
AU Luino, F
De Graff, JV
AF Luino, F.
De Graff, J. V.
TI The Stava mudflow of 19 July 1985 (Northern Italy): a disaster that
effective regulation might have prevented
SO NATURAL HAZARDS AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID MINE TAILINGS; DAMS
AB The disaster occurring in the Eastern Italian Alps in the summer of 1985 was caused by the failure of two tailings dams located just upstream from the village of Stava in the municipality of Tesero (Trento province, Italy). The structure comprised two small storage basins for the deposition of tailings from the separation process of the Prestavel fluorite mine. On their downstream sides, the basins were contained by steep earth embankments, whereas upstream they rested directly on the natural slope. The total height from the base of the lower dam to the crest of the upper dam was over 50 m.
On 19 July 1985, the front of the upper dam suddenly burst, triggering a vast mudflow (180 000 m(3)) that flowed down-channel through Stava, a small village of 20 buildings. The mudflow rapidly traveled over 4.2 km along the Stava Valley and passed through Tesero, before flowing into the Avisio River. The mudflow destroyed many buildings and resulted in 268 fatalities and 20 injuries. From an analysis of the data collected and field observation, several factors may be cited as having contributed to increasing instability, as the upper dam continued to be raised until the disastrous collapse of 19 July. Foremost among these factors is the mistaken assumption that the tailings deposited in the impoundments would consolidate fairly quickly. Indeed, no monitoring system was ever installed to verify the assumed consolidation. Other operational shortcomings and construction errors were contributing factors. Regulations requiring construction standards, operational monitoring, and independent periodic inspection could have prevented this disaster. Comprehensive legislation is required to effectively limit the adverse consequences of tailings dam failures by providing a regulatory environment where the safety and welfare of the local area can be balanced with the economic benefits of mining operations.
C1 [Luino, F.] CNR IRPI, I-10135 Turin, Italy.
[De Graff, J. V.] US Forest Serv, USDA, Clovis, CA 93611 USA.
RP Luino, F (reprint author), CNR IRPI, Str Cacce 73, I-10135 Turin, Italy.
EM fabio.luino@irpi.cnr.it
NR 54
TC 0
Z9 0
U1 5
U2 34
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1561-8633
J9 NAT HAZARD EARTH SYS
JI Nat. Hazards Earth Syst. Sci.
PY 2012
VL 12
IS 4
BP 1029
EP 1044
DI 10.5194/nhess-12-1029-2012
PG 16
WC Geosciences, Multidisciplinary; Meteorology & Atmospheric Sciences;
Water Resources
SC Geology; Meteorology & Atmospheric Sciences; Water Resources
GA 942QF
UT WOS:000304061000014
ER
PT J
AU Jones, GD
McCurry, H
AF Jones, Gretchen D.
McCurry, Hali
TI Differentiating pollen from four species of Gossypium
SO PALYNOLOGY
LA English
DT Article
DE pollen; Gossypium; cotton; boll weevils; Texas
ID BOLL-WEEVILS COLEOPTERA; COTTON; CURCULIONIDAE; MALVACEAE
AB Cotton (Gossypium, Malvaceae) has been spun, woven and dyed since prehistoric times. Four cotton species are economically important; these are Gossypium arboreum (tree cotton), G. barbadense (American pima cotton), G. herbaceum (levant cotton) and G. hirsutum (American upland cotton). Previous research has been conducted examining the pollen grains of the Malvaceae and there is a key that differentiates the four economically important species of Gossypium by their pollen grains. However, the cotton pollen found in boll weevils, Anthonomus grandis Boheman, and other insect pests cannot be keyed to the species using the published key. The objective of this research was to determine if the pollen grains of these four species could be differentiated and develop a key that works for cotton pollen found in insect pests. Flowers of the four taxa were collected from USDA greenhouses and fields and dried. Both unacetolysed and acetolysed pollen grains were examined with light and scanning electron microscopy. The length and width of 300 pollen grains and 100 processes (spines) of each taxon were measured. There were no size differences between the acetolysed and the unacetolysed grains. Gossypium barbadense and G. hirsutum represent the largest grains (mean = 106.7 and 94.9 mu m, respectively) and the longest processes (mean = 17.7 and 15.2 mu m, respectively). Differentiation of these taxa can be useful in the determination of the origin of insect pests that attack cotton when different cotton species are grown within a region. However, additional research is needed on the varieties and cultivars of cotton.
C1 [Jones, Gretchen D.] USDA ARS, APMRU, College Stn, TX 77845 USA.
[McCurry, Hali] Texas A&M Univ, Dept Biol, College Stn, TX 77845 USA.
RP Jones, GD (reprint author), USDA ARS, APMRU, 2771 F&B Rd, College Stn, TX 77845 USA.
EM gretchen.jones@ars.usda.gov
NR 31
TC 2
Z9 2
U1 1
U2 3
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0191-6122
J9 PALYNOLOGY
JI Palynology
PY 2012
VL 36
IS 1
BP 80
EP 85
DI 10.1080/01916122.2011.619363
PG 6
WC Plant Sciences; Paleontology
SC Plant Sciences; Paleontology
GA 947VC
UT WOS:000304459500005
ER
PT J
AU Jones, GD
AF Jones, Gretchen D.
TI Pollen extraction from insects
SO PALYNOLOGY
LA English
DT Article
DE Entomopalynology; pollen recovery; insects; laboratory preparation
ID BOLL-WEEVILS COLEOPTERA; SCANNING-ELECTRON-MICROSCOPY; CORN-EARWORM
LEPIDOPTERA; HELICOVERPA-ARMIGERA; NORTHEASTERN MEXICO; FORAGING
RESOURCES; NOCTUIDAE MOTHS; ZEA LEPIDOPTERA; NEW-ZEALAND; POLLINATION
AB Numerous insect species feed on the pollen, nectar and other plant exudates that are associated with flowers. As a result of this feeding activity, pollen becomes attached to the insects. Analysis of this pollen can reveal what insects eat, their dispersal patterns in and around cropping systems and their role in pollination. However, finding pollen on and/or in an insect depends on the technique used to recover pollen from the insect. Six different techniques are described in detail that have been used to recover pollen from a variety of insects including pests such as boll weevils, Mexican corn rootworms and corn earworm moths. These techniques can be use to recover pollen from internal insect tissues (gut, alimentary canal, crop, etc.), external tissues (proboscis, legs, eyes, etc.) or both. By using the most appropriate technique, better pollen recovery can be made and thus better data obtained.
C1 USDA ARS, APMRU, College Stn, TX 77802 USA.
RP Jones, GD (reprint author), USDA ARS, APMRU, 2771 F&B Rd, College Stn, TX 77802 USA.
EM gretchen.jones@ars.usda.gov
NR 126
TC 5
Z9 5
U1 1
U2 42
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0191-6122
J9 PALYNOLOGY
JI Palynology
PY 2012
VL 36
IS 1
BP 86
EP 109
DI 10.1080/01916122.2011.629523
PG 24
WC Plant Sciences; Paleontology
SC Plant Sciences; Paleontology
GA 947VC
UT WOS:000304459500006
ER
PT J
AU Jackson, MI
Combs, GF
AF Jackson, Matthew I.
Combs, Gerald F., Jr.
BE Hatfield, DL
Berry, MJ
Gladyshev, VN
TI Selenium as a Cancer Preventive Agent
SO SELENIUM: ITS MOLECULAR BIOLOGY AND ROLE IN HUMAN HEALTH, THIRD EDITION
LA English
DT Article; Book Chapter
ID HUMAN PROSTATE-CANCER; METHIONINE SULFOXIDE REDUCTASE; NUTRITION
INTERVENTION TRIALS; CASPASE-MEDIATED APOPTOSIS; DISEASE-SPECIFIC
MORTALITY; EPITHELIAL TUMOR-CELLS; PRIMARY LIVER-CANCER; METHYLSELENINIC
ACID; SODIUM SELENITE; BREAST-CANCER
AB The known metabolic functions of selenium, which appear to be discharged by a fairly small number of selenoproteins, do not fully explain the anticarcinogenic effects of selenium, particularly those observed in response to selenium-supplementation of non-deficient subjects. While anticarcinogenic roles are possible for at least some selenoproteins, i.e., those involved in antioxidant protection, redox regulation and hormonal regulation of metabolism, anticarcinogenic effects of selenium have been shown in individuals with apparently full selenoenzyme expression, suggesting additional mechanisms. Seleno-compounds have been shown to alter gene expression, affect DNA damage and repair, affect cell-signaling pathways, inhibit cell proliferation, stimulate apoptosis, and inhibit metastasis and neo-angiogenesis. Underlying these effects are metabolic activities of various seleno-metabolites: redox cycling, modification of protein-thiols, and methionine mimicry. It is, therefore, likely that selenium deprivation may increase cancer risk by compromising selenoprotein expression, and that supranutritional exposures to Se reduce cancer risk in non-deficient subjects.
C1 [Jackson, Matthew I.; Combs, Gerald F., Jr.] ARS, Grand Forks Human Nutr Res Ctr, USDA, Grand Forks, ND 58202 USA.
RP Combs, GF (reprint author), ARS, Grand Forks Human Nutr Res Ctr, USDA, Grand Forks, ND 58202 USA.
EM gerald.combs@ars.usda.gov
NR 90
TC 3
Z9 3
U1 0
U2 4
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4614-1025-6
PY 2012
BP 313
EP 323
DI 10.1007/978-1-4614-1025-6_24
D2 10.1007/978-1-4614-1025-6
PG 11
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BZZ25
UT WOS:000303410300024
ER
PT J
AU Ginger, C
Emery, MR
Baumflek, MJ
Putnam, DE
AF Ginger, Clare
Emery, Marla R.
Baumflek, Michelle J.
Putnam, David E.
TI Access to Natural Resources on Private Property: Factors Beyond Right of
Entry
SO SOCIETY & NATURAL RESOURCES
LA English
DT Article
DE access to natural resources; Maine; Native Americans; natural resource
management; non-timber forest products; private property
ID MANAGEMENT
AB Discussions of access to natural resources on private lands in the United States often focus on property rights and ownership. In Maine, changing ownership of private forestland has been associated with increased posting against trespass. This raises concerns about the terms of physical entry to land for resource use. While the right of entry is an important component of access to natural resources, other factors also affect access. Building on a theory proposed by Ribot and Peluso (2003), this study of nontimber forest product gatherers and forest landowners/managers in northern Maine examines social and biophysical factors that affect access to natural resources. We consider who is affected by these factors, and suggest ways forward to promote more equitable access to nontimber forest products, especially for Native Americans in the region.
C1 [Ginger, Clare] Univ Vermont, Rubenstein Sch Environm & Nat Resources, Burlington, VT 05405 USA.
[Emery, Marla R.] ARS, USDA, No Res Stn, S Burlington, VT USA.
[Baumflek, Michelle J.] Cornell Univ, Dept Nat Resources, Ithaca, NY 14853 USA.
[Putnam, David E.] Univ Maine, Dept Math & Sci, Presque Isle, ME USA.
RP Ginger, C (reprint author), Univ Vermont, Rubenstein Sch Environm & Nat Resources, 308 Aiken Ctr,81 Carrigan Dr, Burlington, VT 05405 USA.
EM cginger@uvm.edu
NR 37
TC 5
Z9 5
U1 4
U2 18
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0894-1920
J9 SOC NATUR RESOUR
JI Soc. Nat. Resour.
PY 2012
VL 25
IS 7
BP 700
EP 715
DI 10.1080/08941920.2011.633596
PG 16
WC Environmental Studies; Planning & Development; Sociology
SC Environmental Sciences & Ecology; Public Administration; Sociology
GA 948AH
UT WOS:000304475300006
ER
PT S
AU Pinkerton, TS
Wild, JR
Howard, JA
AF Pinkerton, T. Scott
Wild, James R.
Howard, John A.
BE Dunwell, JM
Wetten, AC
TI Organophosphorus Hydrolase: A Multifaceted Plant Genetic Marker Which Is
Selectable, Scorable, and Quantifiable in Whole Seed
SO TRANSGENIC PLANTS: METHODS AND PROTOCOLS, SECOND EDITION
SE Methods in Molecular Biology
LA English
DT Article; Book Chapter
DE Plant transformation; Selectable marker; Scorable marker;
Organophosphate pesticides and herbicides; Organophosphorus hydrolase;
Coumaphos; Bensulide; Paraoxon; Zea mays
ID TRANSGENIC PLANTS; TRANSFORMATION; EXPRESSION; RESISTANCE; COUMAPHOS
AB Organophosphorus hydrolase (OPH, EC 3.1.8.1) provides a novel function as an alternative genetic marker system For use in many types of plant transformations. OPH is a high-capacity hydrolase with multiple organophosphorus substrates, many of which are neurotoxins and thus used extensively as pesticides. This spectrum of organophosphates includes compounds that are phytotoxic as well as those that are hydrolyzed to products that are easily detected visually without significant disruption of plant health. This dichotomy gives OPH the features of both a selectable marker as well as that of a scorable marker system, and these characteristics have been tested at several stages during the plant transformation and regeneration process. Finally, it is possible to quantify hydrolytic activity in the seed without interfering with its subsequent growth and regeneration.
C1 [Pinkerton, T. Scott] ARS, Crop Bioprotect Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL USA.
[Wild, James R.] Texas A&M Univ, Dept Biochem & Biophys, College Stn, TX 77843 USA.
[Howard, John A.] Calif Polytech State Univ San Luis Obispo, Appl Biotechnol Inst, San Luis Obispo, CA 93407 USA.
RP Pinkerton, TS (reprint author), ARS, Crop Bioprotect Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL USA.
NR 28
TC 2
Z9 2
U1 0
U2 1
PU HUMANA PRESS INC
PI TOTOWA
PA 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA
SN 1064-3745
BN 978-1-61779-558-9
J9 METHODS MOL BIOL
JI Methods Mol. Biol.
PY 2012
VL 847
BP 11
EP 23
DI 10.1007/978-1-61779-558-9_2
D2 10.1007/978-1-61779-558-9
PG 13
WC Biochemical Research Methods; Biochemistry & Molecular Biology; Plant
Sciences
SC Biochemistry & Molecular Biology; Plant Sciences
GA BAG18
UT WOS:000304069000002
PM 22350995
ER
PT S
AU Petri, C
Scorza, R
Srinivasan, C
AF Petri, Cesar
Scorza, Ralph
Srinivasan, Chinnathambi
BE Dunwell, JM
Wetten, AC
TI Highly Efficient Transformation Protocol for Plum (Prunus domestica L.)
SO TRANSGENIC PLANTS: METHODS AND PROTOCOLS, SECOND EDITION
SE Methods in Molecular Biology
LA English
DT Article; Book Chapter
DE High-throughput transformation; Prunus domestica; Fruit trees; Rosaceae;
Functional genomics; Agrobacterium tumefaciens
ID COAT PROTEIN GENE; POX VIRUS; TRANSGENIC PLANTS; REGENERATION; TOOL
AB A high-throughput transformation system for plum has been developed using hypocotyl slices excised from zygotic embryos as the source of explains. The hypocotyl slices are infected in an Agrobacterium tumefaciens suspension and then cocultivated for 3 days in shoot regeneration 3/4 MS basal medium supplemented with 9 mu M 2,4-dichlorophenoxyacetic acid. Transgenic shoots are regenerated in a medium containing 7.5 mu M thidiazuron and elongated in a medium containing 3 mu M benzyladenine in the presence of 80 mg/L kanamycin in both media. Transformed shoots are rooted in 1/2 MS basal medium supplemented with 5 mu M NAA and 40 mg/L kanamycin. The transgenic plants are acclimatized in a growth chamber and transferred to a temperature-controlled greenhouse. This protocol has allowed transformation efficiencies up to 42% and enabled the production of self-rooted transgenic plum plants within 6 months of transformation.
C1 [Petri, Cesar; Scorza, Ralph; Srinivasan, Chinnathambi] ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV USA.
RP Petri, C (reprint author), ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV USA.
NR 14
TC 2
Z9 2
U1 0
U2 5
PU HUMANA PRESS INC
PI TOTOWA
PA 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA
SN 1064-3745
BN 978-1-61779-558-9
J9 METHODS MOL BIOL
JI Methods Mol. Biol.
PY 2012
VL 847
BP 191
EP 199
DI 10.1007/978-1-61779-558-9_16
D2 10.1007/978-1-61779-558-9
PG 9
WC Biochemical Research Methods; Biochemistry & Molecular Biology; Plant
Sciences
SC Biochemistry & Molecular Biology; Plant Sciences
GA BAG18
UT WOS:000304069000016
PM 22351009
ER
PT J
AU Sutton, MA
Reis, S
Billen, G
Cellier, P
Erisman, JW
Mosier, AR
Nemitz, E
Sprent, J
van Grinsven, H
Voss, M
Beier, C
Skiba, U
AF Sutton, M. A.
Reis, S.
Billen, G.
Cellier, P.
Erisman, J. W.
Mosier, A. R.
Nemitz, E.
Sprent, J.
van Grinsven, H.
Voss, M.
Beier, C.
Skiba, U.
TI "Nitrogen & Global Change" Preface
SO BIOGEOSCIENCES
LA English
DT Editorial Material
ID EXCHANGE
C1 [Sutton, M. A.; Reis, S.; Nemitz, E.; Skiba, U.] Ctr Ecol & Hydrol, Penicuik EH26 0QB, Midlothian, Scotland.
[Billen, G.] Univ Paris 06, F-75005 Paris, France.
[Cellier, P.] INRA, Unit Mixte Rech Environm & Grandes Cultures, F-78850 Thiverval Grignon, France.
[Erisman, J. W.] Louis Bolk Inst, NL-3972 LA Driebergen, Netherlands.
[Mosier, A. R.] ARS, USDA, Washington, DC USA.
[Sprent, J.] Univ Dundee, Coll Life Sci, Dundee DD15EH, Scotland.
[van Grinsven, H.] Netherlands Environm Assessment Agcy PBL, NL-3720 AH Bilthoven, Netherlands.
[Voss, M.] Leibniz Inst Balt Sea Res Warnemnde, D-18115 Rostock, Germany.
[Beier, C.] Tech Univ Denmark, Biosyst Dept, Ris Natl Lab Sustainable Energy, Roskilde, Denmark.
RP Reis, S (reprint author), Ctr Ecol & Hydrol, Bush Estate, Penicuik EH26 0QB, Midlothian, Scotland.
EM ms@ceh.ac.uk; srei@ceh.ac.uk
RI Nemitz, Eiko/I-6121-2012; Reis, Stefan/E-4713-2011; Sutton,
Mark/K-2700-2012; Skiba, Ute/I-6441-2012; Beier, Claus/C-1789-2016
OI Nemitz, Eiko/0000-0002-1765-6298; Reis, Stefan/0000-0003-2428-8320;
Beier, Claus/0000-0003-0348-7179
NR 18
TC 8
Z9 10
U1 2
U2 29
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1726-4170
J9 BIOGEOSCIENCES
JI Biogeosciences
PY 2012
VL 9
IS 5
BP 1691
EP 1693
DI 10.5194/bg-9-1691-2012
PG 3
WC Ecology; Geosciences, Multidisciplinary
SC Environmental Sciences & Ecology; Geology
GA 942NV
UT WOS:000304052500008
ER
PT J
AU Luo, Y
Arnold, J
Allen, P
Chen, X
AF Luo, Y.
Arnold, J.
Allen, P.
Chen, X.
TI Baseflow simulation using SWAT model in an inland river basin in
Tianshan Mountains, Northwest China
SO HYDROLOGY AND EARTH SYSTEM SCIENCES
LA English
DT Article
ID STORAGE BOUSSINESQ MODEL; SNOWMELT INFILTRATION; RECESSION ANALYSIS;
FLOW SEPARATION; WATER; EQUATION; RECHARGE; VARIABILITY; RUNOFF; SOILS
AB Baseflow is an important component in hydrological modeling. The complex streamflow recession process complicates the baseflow simulation. In order to simulate the snow and/or glacier melt dominated streamflow receding quickly during the high-flow period but very slowly during the low-flow period in rivers in arid and cold northwest China, the current one-reservoir baseflow approach in SWAT (Soil Water Assessment Tool) model was extended by adding a slow- reacting reservoir and applying it to the Manas River basin in the Tianshan Mountains. Meanwhile, a digital filter program was employed to separate baseflow from streamflow records for comparisons. Results indicated that the two-reservoir method yielded much better results than the one-reservoir one in reproducing streamflow processes, and the low-flow estimation was improved markedly. Nash-Sutcliff efficiency values at the calibration and validation stages are 0.68 and 0.62 for the one-reservoir case, and 0.76 and 0.69 for the two-reservoir case. The filter-based method estimated the baseflow index as 0.60, while the model-based as 0.45. The filter-based baseflow responded almost immediately to surface runoff occurrence at onset of rising limb, while the model-based responded with a delay. In consideration of watershed surface storage retention and soil freezing/thawing effects on infiltration and recharge during initial snowmelt season, a delay response is considered to be more reasonable. However, a more detailed description of freezing/thawing processes should be included in soil modules so as to determine recharge to aquifer during these processes, and thus an accurate onset point of rising limb of the simulated baseflow.
C1 [Luo, Y.; Chen, X.] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Lab Desert & Oasis Ecol, Urumqi 830011, Peoples R China.
[Arnold, J.] ARS, Grassland Soil & Water Res Lab, USDA, Temple, TX 76502 USA.
[Allen, P.] Baylor Univ, Dept Geol, Waco, TX 76798 USA.
RP Luo, Y (reprint author), Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Lab Desert & Oasis Ecol, Urumqi 830011, Peoples R China.
EM luoyi.cas@hotmail.com
FU 973 Program of China [2010CB951002]; Chinese Academy of Sciences
[KZXC2-YW-BR-12]; Natural Science Foundation of China [41130641];
Project of the National Eleventh-Five Year Research Program of China
[2012BAC19B07]
FX This paper is partially funded by the 973 Program of China (Grant No.
2010CB951002), the Chinese Academy of Sciences (Grant No.
KZXC2-YW-BR-12), Natural Science Foundation of China (Grant No.
41130641), and the Project of the National Eleventh-Five Year Research
Program of China (2012BAC19B07).
NR 35
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PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1027-5606
J9 HYDROL EARTH SYST SC
JI Hydrol. Earth Syst. Sci.
PY 2012
VL 16
IS 4
BP 1259
EP 1267
DI 10.5194/hess-16-1259-2012
PG 9
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA 942MY
UT WOS:000304049500015
ER
PT J
AU Samui, P
Gowda, PH
Oommen, T
Howell, TA
Marek, TH
Porter, DO
AF Samui, Pijush
Gowda, Prasanna H.
Oommen, Thomas
Howell, Terry A.
Marek, Thomas H.
Porter, Dana O.
TI Statistical learning algorithms for identifying contrasting tillage
practices with Landsat Thematic Mapper data
SO INTERNATIONAL JOURNAL OF REMOTE SENSING
LA English
DT Article
ID SUPPORT VECTOR MACHINE; MULTISPECTRAL DATA; RESIDUE COVER;
CLASSIFICATION; IMAGERY; WATER
AB Tillage management practices have a direct impact on water-holding capacity, evaporation, carbon sequestration and water quality. This study examines the feasibility of two statistical learning algorithms, namely the least square support vector machine (LSSVM) and relevance vector machine (RVM), for identifying two contrasting tillage management practices using remote-sensing data. LSSVM is firmly based on statistical learning theory, whereas RVM is a probabilistic model where the training takes place in a Bayesian framework. Input to the LSSVM and RVM algorithms were reflectance values at different bandwidths and indices derived from Landsat Thematic Mapper (TM) data. Ground-truth data for this study were collected from 72 commercial production fields in two counties located in the Texas High Plains of the south-central USA. Numerous LSSVM- and RVM-based tillage models were developed and evaluated for tillage classification accuracy. The percentage correct and kappa statistic were used for the evaluation. The results showed that the best LSSVM and RVM models included the use of TM band 5 or vegetation indices that involved TM band 5, indicating sensitivity of near-infrared reflectance of crop residue cover on the surface. This is consistent with other remote-sensing models reported in the literature. Overall classification accuracies of the best LSSVM and RVM models were 87.8 and 90.2%, respectively. The corresponding kappa statistics for those models were 0.75 and 0.80, respectively. Furthermore, comparison of the best LSSVM and RVM models with the published logistic regression-based tillage models developed with the same data indicated the superiority of the RVM model over LSSVM and logistic regression models in determining contrasting tillage practices with Landsat TM data.
C1 [Gowda, Prasanna H.; Howell, Terry A.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Samui, Pijush] VIT Univ, Ctr Disaster Mitigat & Management, Vellore 632014, Tamil Nadu, India.
[Oommen, Thomas] Michigan Technol Univ, Dept Geol & Min Engn & Sci, Houghton, MI 49931 USA.
[Marek, Thomas H.] Texas A&M Univ, Texas AgriLife Res, Amarillo, TX 79106 USA.
[Porter, Dana O.] Texas A&M Univ, Texas AgriLife Res, Lubbock, TX 79403 USA.
RP Gowda, PH (reprint author), USDA ARS, Conservat & Prod Res Lab, PO Drawer 10, Bushland, TX 79012 USA.
EM Gowda@ars.usda.gov
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U1 0
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PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0143-1161
J9 INT J REMOTE SENS
JI Int. J. Remote Sens.
PY 2012
VL 33
IS 18
BP 5732
EP 5745
DI 10.1080/01431161.2012.671555
PG 14
WC Remote Sensing; Imaging Science & Photographic Technology
SC Remote Sensing; Imaging Science & Photographic Technology
GA 936JB
UT WOS:000303585600006
ER
PT J
AU Hoffman, CM
Sieg, CH
McMillin, JD
Fule, PZ
AF Hoffman, Chad M.
Sieg, Carolyn Hull
McMillin, Joel D.
Fule, Peter Z.
TI Fuel loadings 5 years after a bark beetle outbreak in south-western USA
ponderosa pine forests
SO INTERNATIONAL JOURNAL OF WILDLAND FIRE
LA English
DT Article
DE Dendroctonus; forest fuels; Ips; Pinus ponderosa; resistance to fire
control
ID UNITED-STATES; MOUNTAIN PINE; TREE MORTALITY; LODGEPOLE PINE; COMMUNITY
STRUCTURE; NORTHERN ARIZONA; CLIMATE-CHANGE; FIRES; COLEOPTERA;
MANAGEMENT
AB Landscape-level bark beetle (Coleoptera: Curculionidae, Scolytinae) outbreaks occurred in Arizona ponderosa pine (Pinus ponderosa Dougl. ex Law.) forests from 2001 to 2003 in response to severe drought and suitable forest conditions. We quantified surface fuel loadings and depths, and calculated canopy fuels based on forest structure attributes in 60 plots established 5 years previously on five national forests. Half of the plots we sampled in 2007 had bark beetle-caused pine mortality and half did not have mortality. Adjusting for differences in pre-outbreak stand density, plots with mortality had higher surface fuel and lower canopy fuel loadings 5 years after the outbreak compared with plots without mortality. Total surface fuels averaged 2.5 times higher and calculated canopy fuels 2 times lower in plots with mortality. Nearly half of the trees killed in the bark beetle outbreak had fallen within 5 years, resulting in loadings of 1000-h woody fuels above recommended ranges for dry coniferous forests in 20% of the mortality plots. We expect 1000-h fuel loadings in other mortality plots to exceed recommended ranges as remaining snags fall to the ground. This study adds to previous work that documents the highly variable and complex effects of bark beetle outbreaks on fuel complexes.
C1 [Hoffman, Chad M.] Univ Idaho, Coll Nat Resources, Wildland Fire Program, Moscow, ID 83844 USA.
[Sieg, Carolyn Hull] USDA Forest Serv, Rocky Mt Res Stn, Flagstaff, AZ 86001 USA.
[Fule, Peter Z.] No Arizona Univ, Sch Forestry, Flagstaff, AZ 86011 USA.
RP Hoffman, CM (reprint author), Colorado State Univ, Dept Forest & Rangeland Stewardship, Warner Coll Nat Resources, Ft Collins, CO 80523 USA.
EM c.hoffman@colostate.edu; csieg@fs.fed.us; jmcmillin@fs.fed.us;
pete.fule@nau.edu
OI Hoffman, Chad/0000-0001-8715-937X
FU Apache-Sitgreaves National Forest; Coconino National Forest; Kaibab
National Forest; Prescott National Forest; Tonto National Forest; USDA
Forest Service [INT-F-07-01]; USDA Forest Service Southwestern Region,
Forest Health; USDA Forest Service, Rocky Mountain Research Station
FX We thank Melissa Joy Fischer, Tania Begaye and Grace Hancock for field
data collection and entry, and Jesse Anderson and Kelly Williams for
creation of maps. We also thank the Apache-Sitgreaves, Coconino, Kaibab,
Prescott and Tonto National Forests for their support of this work.
Funding was provided by USDA Forest Service, Forest Health Monitoring,
Evaluation Monitoring grant INT-F-07-01; USDA Forest Service
Southwestern Region, Forest Health; and USDA Forest Service, Rocky
Mountain Research Station.
NR 41
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U2 26
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1049-8001
J9 INT J WILDLAND FIRE
JI Int. J. Wildland Fire
PY 2012
VL 21
IS 3
BP 306
EP 312
DI 10.1071/WF11019
PG 7
WC Forestry
SC Forestry
GA 939QB
UT WOS:000303826700011
ER
PT J
AU Ducey, TF
Miller, JO
Busscher, WJ
Lackland, DT
Hunt, PG
AF Ducey, Thomas F.
Miller, Jarrod O.
Busscher, Warren J.
Lackland, Daniel T.
Hunt, Patrick G.
TI An analysis of the link between strokes and soils in the South Carolina
coastal plains
SO JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS
SUBSTANCES & ENVIRONMENTAL ENGINEERING
LA English
DT Article
DE Environmental exposure; geostatistical analysis; soil; South Carolina;
SSURGO; Stroke Belt; stroke buckle
ID HUMAN MICROBIOME PROJECT; SPATIAL EPIDEMIOLOGY;
CHLAMYDOPHILA-PNEUMONIAE; INFORMATION-SYSTEMS; FECAL MICROBIOTA;
RISK-FACTOR; DISEASE; MORTALITY; BELT; ATHEROSCLEROSIS
AB The Stroke Belt is a geographical region of the Southeastern United States where resident individuals suffer a disproportionately higher rate of strokes than the rest of the population. While the "buckle" of this Stroke Belt coincides with the Southeastern Coastal Plain region of North and South Carolina and Georgia, there is a paucity of information pinpointing specific causes for this phenomenon. A number of studies posit that an exposure event-potentially microbial in nature-early in life, could be a risk factor. The most likely vector for such an exposure event would be the soils of the Southeastern Coastal Plain region. These soils may have chemical and physical properties which are conducive to the growth and survival of microorganisms which may predispose individuals to stroke. To this aim, we correlated SC stroke mortality data to soil characteristics found in the NRCS SSURGO database. In statewide comparisons, depth to water table (50 to 100 cm, R = 0.62) and soil drainage class (poorly drained, R = 0.59; well drained, R = -0.54) both showed statistically significant relationships with stroke rate. In a 20 county comparison, depth to water table, drainage class, hydric rating (hydric soils, R = 0.56), and pH (very strongly acid, R = 0.66) all showed statistically significant relationships with stroke rate. These data should help direct future research and epidemiology efforts to pinpoint the exact exposure events which predispose individuals to an increased stroke rate.
C1 [Ducey, Thomas F.; Miller, Jarrod O.; Busscher, Warren J.; Hunt, Patrick G.] USDA, Coastal Plains Soil Water & Plant Res Ctr, Agr Res Serv, Florence, SC 29501 USA.
[Lackland, Daniel T.] Med Univ S Carolina, Dept Neurosci, Charleston, SC 29425 USA.
RP Ducey, TF (reprint author), USDA, Coastal Plains Soil Water & Plant Res Ctr, Agr Res Serv, 2611 W Lucas St, Florence, SC 29501 USA.
EM thomas.ducey@ars.usda.gov
OI Ducey, Thomas/0000-0001-8199-0584; Miller, Jarrod/0000-0002-5353-233X
NR 42
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PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1093-4529
J9 J ENVIRON SCI HEAL A
JI J. Environ. Sci. Health Part A-Toxic/Hazard. Subst. Environ. Eng.
PY 2012
VL 47
IS 8
BP 1104
EP 1112
DI 10.1080/10934529.2012.668064
PG 9
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA 936EW
UT WOS:000303574700005
PM 22506703
ER
PT J
AU Smith, DR
AF Smith, David R.
TI Beldonea Cameron (Hymenoptera,Tenthredinidae, Tenthredininae) new to
Thailand, and the males of B. okutanii and B. impunctata
SO JOURNAL OF HYMENOPTERA RESEARCH
LA English
DT Article
C1 ARS, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, Washington, DC 20013 USA.
RP Smith, DR (reprint author), ARS, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, POB 37012,MRC 168, Washington, DC 20013 USA.
EM sawfly2@aol.com
FU National Science Foundation [DEB-0542864]
FX Acknowledgments are due to National Science Foundation Grant
DEB-0542864, Thailand Biodiversity Survey, to M. J. Sharkey, University
of Kentucky, Lexington. Michele Touchet, Systematic Entomology
Laboratory, USDA, Washington, D.C. (SEL) helped with the images. I thank
J. Prena and T. J. Henry, SEL, Washington, D.C. for reviewing the
manuscript. USDA is an equal opportunity provider and employer.
NR 8
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U1 0
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PU PENSOFT PUBLISHERS
PI SOFIA
PA GEO MILEV STR 13A, SOFIA, 1111, BULGARIA
SN 1070-9428
J9 J HYMENOPT RES
JI J. Hymenopt. Res.
PY 2012
VL 25
BP 15
EP 18
DI 10.3897/JHR.25.2903
PG 4
WC Entomology
SC Entomology
GA 941MK
UT WOS:000303967100002
ER
PT J
AU Mischke, CC
Chatakondi, N
AF Mischke, Charles C.
Chatakondi, Nagaraj
TI Effects of Abrupt pH Increases on Survival of Different Ages of Young
Channel Catfish and Hybrid Catfish
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID FRY; EXCRETION; FISH; SAC
AB A previous study showed that fry of channel catfish Ictalurus punctatus are sensitive to pH increases but tolerant of pH decreases. This study determined the tolerance of channel catfish and hybrid catfish (female channel catfish x male blue catfish I. furcatus) sac fry, swim-up fry, and fingerlings to abrupt pH increases. Sac fry, swim-up fry, and fingerlings of channel catfish and hybrid catfish are sensitive to abrupt pH increases and become more tolerant with age or size. Hybrid catfish sac fry were more tolerant than channel catfish sac fry at lower pH increases, as evidenced by their higher 24-h LC10 (0.38 and 0.13 pH unit increases, respectively) and 24-h LC50 (0.48 and 0.36 pH unit increases, respectively). However, the 24-h LC90 for hybrid catfish sac fry (0.62 pH unit) was much lower than that for channel catfish (1.03 pH unit), showing that at higher pH increases hybrids are less tolerant. Channel catfish swim-up fry were more tolerant of pH increases (24-h LC50 = 1.28 pH units) than were hybrids (24-h LC50 = 0.83 pH units), but hybrid catfish fingerlings (24-h LC50 = 1.54 pH units) were more tolerant of pH increases than channel catfish fingerlings (24-h LC50 = 1.33 pH units). When comparing fish acclimated to different starting pH levels, lethal concentration values increased correspondingly. This indicates that pH sensitivity is due to upper lethal pH limits rather than abrupt pH changes.
C1 [Mischke, Charles C.] Mississippi State Univ, Thad Cochran Natl Warmwater Aquaculture Ctr, Stoneville, MS 38776 USA.
[Chatakondi, Nagaraj] ARS, USDA, Natl Warmwater Aquaculture Ctr, Stoneville, MS 38776 USA.
RP Mischke, CC (reprint author), Mississippi State Univ, Thad Cochran Natl Warmwater Aquaculture Ctr, Box 197, Stoneville, MS 38776 USA.
EM cmischke@drec.msstate.edu
OI Mischke, Charles/0000-0002-3934-9571
FU MAFES [MIS-081115]
FX This is journal article J-11665 of the Mississippi Agricultural and
Forestry Experiment Station (MAFES), Mississippi State University. This
project is supported under MAFES project MIS-081115. Mention of trade
names or commercial products is solely for the purpose of providing
specific information and does not imply recommendation or endorsement by
the U.S. Department of Agriculture.
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PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-2055
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 2
BP 160
EP 163
DI 10.1080/15222055.2012.678565
PG 4
WC Fisheries
SC Fisheries
GA 936NR
UT WOS:000303597700006
ER
PT J
AU Torrans, L
Ott, B
Bosworth, B
AF Torrans, Les
Ott, Brian
Bosworth, Brian
TI Impact of Minimum Dissolved Oxygen Concentration on Grow-Out Performance
of Blue Catfish with Comparison to Channel Catfish
SO NORTH AMERICAN JOURNAL OF AQUACULTURE
LA English
DT Article
ID EARTHEN PONDS; ICTALURUS-PUNCTATUS; FEED-INTAKE; BACKCROSS HYBRIDS;
RAINBOW-TROUT; FURCATUS; PROTEIN; CONSUMPTION; RAFINESQUE; MANAGEMENT
AB Feed intake, the feed conversion ratio (FCR), and the production of blue catfish Ictalurus furcatus and channel catfish I. punctatus were examined in 1-acre ponds maintained at either a high or low minimum dissolved oxygen (DO) concentration (mean values of 4.29 and 2.54 ppm [55% and 32% air saturation], respectively). Two additional studies were conducted examining only blue catfish in 0.25-acre ponds maintained at either a high (mean values of 4.43 and 4.46 ppm [56% and 55% air saturation] in the two studies) or low (mean values of 1.41 and 1.64 ppm [18% and 20% air saturation]) minimum DO concentration. Blue and channel catfish exhibited similar feed intake (13,432 versus 13,063 lb/acre), growth (1.40 versus 1.49 lb/fish), gross production (6,662 versus 6,663 lb/acre), and net production (5,935 versus 5,813 lb/acre) in the high-DO treatments in the 1-acre ponds. Within the low-DO treatment, feed intake was not significantly different (13,555 versus 12,398 lb/acre for blue and channel catfish, respectively), but both gross production (6,796 versus 5,810 lb/acre) and net production (6,069 versus 4,960 lb/acre) were significantly lower in the channel catfish ponds. The FCR was similar between species (2.25 versus 2.38) and was not affected by DO treatment. In the blue catfish studies in the 0.25-acre ponds, ponds in the high-DO treatments had significantly higher feed intake (+ 23.0% and + 33.4% in 2006 and 2007, respectively) and net weight gain (+ 38.0% versus + 42.3%) than those in the low-DO treatments; both gross production (16,898 versus 12,963 lb/acre) and net production (14,768 versus 10,855 lb/acre) were significantly higher in the high-DO treatment in 2006. Food conversion ratios averaged 1.86 in 2006 and 2007 and were similar in fish among DO treatments in both years. Data from these and other similar controlled studies indicate that most blue catfish production variables tend to be affected less by low DO concentrations than are channel catfish.
C1 [Torrans, Les; Ott, Brian; Bosworth, Brian] ARS, USDA, Thad Cochran Natl Warmwater Aquaculture Ctr, Catfish Genet Res Unit, Stoneville, MS 38776 USA.
RP Torrans, L (reprint author), ARS, USDA, Thad Cochran Natl Warmwater Aquaculture Ctr, Catfish Genet Res Unit, POB 38, Stoneville, MS 38776 USA.
EM les.torrans@ars.usda.gov
FU U.S. Department of Agriculture, Agricultural Research Service CRIS
[13320-003-00D]
FX This research was supported by the U.S. Department of Agriculture,
Agricultural Research Service CRIS Number 13320-003-00D. Mention of
trade names or commercial products in this publication is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the U.S. Department of Agriculture. We
thank J. B. Jones, S. E. Jones, R. Mascagni, M. Loftin, S. Manning, M.
Patterson, S. Patterson, E. Allen, W. Avritt, T. Bates, and the staff at
the Delta Western Research Center for their assistance with this study,
D. Boykin for her assistance with the statistical analysis, and B.
Green, J. Tidwell, M. Li, and B. Peterson for their helpful reviews of
the manuscript.
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PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1522-2055
EI 1548-8454
J9 N AM J AQUACULT
JI N. Am. J. Aqualcult.
PY 2012
VL 74
IS 2
BP 273
EP 282
DI 10.1080/15222055.2012.678566
PG 10
WC Fisheries
SC Fisheries
GA 936NR
UT WOS:000303597700020
ER
PT J
AU Cheng, HN
Neiss, TG
AF Cheng, H. N.
Neiss, Thomas G.
TI Solution NMR Spectroscopy of Food Polysaccharides
SO POLYMER REVIEWS
LA English
DT Review
DE Carbohydrates; food gums; food polymers; hydrocolloid; nuclear magnetic
resonance (NMR); polysaccharides
ID NUCLEAR-MAGNETIC-RESONANCE; OXIDIZED POTATO STARCH; HIGH-FIELD NMR;
RESOLUTION C-13-NMR SPECTROSCOPY; LEGUME-SEED GALACTOMANNANS; SIMPLE
H-1-NMR METHOD; WAXY MAIZE STARCH; CELLULOSE ETHERS; SUBSTITUENT
DISTRIBUTION; ACETYLATED DERIVATIVES
AB Many polysaccharides are allowed for direct food use, where they serve a number of useful functions including dietary fiber, bulking agent, thickener, encapsulant, gelling agent, foam and emulsion stabilizer, protective colloid, emulsifier and suspending agent, adhesive and binder, flocculant, swelling agent, film/coat former, or syneresis inhibitor. Many of these polysaccharides have complex structures or are mixtures with different components. Over the years, NMR has been a premiere technique for characterizing thesematerials. NMR characterization can help identify the materials in question, quantify the different functional groups present, and detect minor components and impurities. Above all, the high resolution achieved in solution NMR can provide detailed structural information on composition, sequence distribution, substitution pattern, and molecular weights (in some cases) for individual polysaccharides. Concurrent application of other analytical techniques, such as methylation, esterification, fractionation, mass spectrometry, and chromatographic methods, has enabled structural information on even complex polysaccharides or mixtures to be obtained. In this article a review is given of the solution NMR of food polysaccharides, with emphasis on papers published in the past 20 years. Included in the review is a survey of 21 common food polysaccharides, the current understanding of their structures, and the techniques used for their determination.
C1 [Cheng, H. N.] USDA ARS, So Reg Res Ctr, New Orleans, LA 70124 USA.
[Neiss, Thomas G.] Janssen Res & Dev, Spring House, PA USA.
RP Cheng, HN (reprint author), USDA ARS, So Reg Res Ctr, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM hn.cheng@ars.usda.gov
NR 196
TC 39
Z9 40
U1 7
U2 121
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1558-3724
J9 POLYM REV
JI Polym. Rev.
PY 2012
VL 52
IS 2
BP 81
EP 114
DI 10.1080/15583724.2012.668154
PG 34
WC Polymer Science
SC Polymer Science
GA 936SW
UT WOS:000303611300001
ER
PT J
AU Grunwald, NJ
AF Gruenwald, Niklaus J.
TI Genome sequences of Phytophthora enable translational plant disease
management and accelerate research
SO CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE
LA English
DT Article; Proceedings Paper
CT Annual General Meeting of the
Canadian-Phytopathological-Society/Symposium on Contributions of
Genomics to Plant Pathology
CY JUN 20-23, 2010
CL Vancouver, CANADA
SP Canadian Phytopathol Soc
DE effector; emerging pathogens; exotic pathogens; genome analysis;
Phytophthora; translational analysis
ID SUDDEN OAK DEATH; SOJAE-EFFECTOR AVR1B; PATHOGEN PHYTOPHTHORA;
MICROSATELLITE MARKERS; EUROPEAN POPULATIONS; RAMORUM DETECTION; CLONAL
LINEAGES; NORTH-AMERICAN; DOWNY MILDEW; AVIRULENCE
AB Whole and partial genome sequences are becoming available at an ever-increasing pace. For many plant pathogen systems, we are moving into the era of genome resequencing. The first Phytophthora genomes, P. ramorum and P. sojae, became available in 2004, followed shortly by P. infestans in 2006. Availability of whole genome sequences has provided rapid and immediate advances in several areas also resulting in many practical applications and critical new insights. Availability of comparative genome data facilitated discovery of new classes of effectors, such as the RxLR-dEER and crinkler effector families. Genome data also enabled development of molecular markers for population genomic approaches that provided critical new insights into the evolutionary history of species and clades of Phytophthora. Several select examples of advances resulting from comparative genomic approaches in a concerted effort of the Oomycete research community are reviewed.
C1 Oregon State Univ, Hort Crops Res Lab, USDA Agr Res Serv, Corvallis, OR 97330 USA.
RP Grunwald, NJ (reprint author), Oregon State Univ, Hort Crops Res Lab, USDA Agr Res Serv, Corvallis, OR 97330 USA.
EM grunwaln@science.oregonstate.edu
RI Grunwald, Niklaus/K-6041-2013
OI Grunwald, Niklaus/0000-0003-1656-7602
NR 55
TC 3
Z9 3
U1 0
U2 7
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0706-0661
J9 CAN J PLANT PATHOL
JI Can. J. Plant Pathol.-Rev. Can. Phytopathol.
PY 2012
VL 34
IS 1
BP 13
EP 19
DI 10.1080/07060661.2012.664568
PG 7
WC Plant Sciences
SC Plant Sciences
GA 936CE
UT WOS:000303567700003
ER
PT J
AU Bux, H
Ashraf, M
Chen, XM
AF Bux, Hadi
Ashraf, Muhammad
Chen, Xianming
TI Expression of high-temperature adult-plant (HTAP) resistance against
stripe rust (Puccinia striiformis f. sp tritici) in Pakistan wheat
landraces
SO CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE
LA English
DT Article
DE cultivar screening; durable resistance; wheat genetic resources; yellow
rust
ID UNITED-STATES; SEEDLING RESISTANCE; DURABLE RESISTANCE; RACES;
CULTIVARS; IDENTIFICATION; INHERITANCE; EPIDEMIC; NUMBER; GENES
AB Stripe rust (Puccinia striiformis f. sp. tritici, Pst) is an important disease of wheat in the United States and Pakistan. Genetic resistance in wheat is a cost-effective and convenient control measure. In the present study, resistance testing of 115 wheat landraces from Pakistan was carried out initially at the seedling stage with seven races of the pathogen, four from the USA and three from Pakistan. The germplasm showed a general lack of effective seedling resistance. Only two genotypes (PI 210916, PI 219752) were resistant against all races. Adult plants of the wheat genotypes were also tested at high temperatures under greenhouse conditions and at two field locations in Washington State. In the test with US Pst race PST-127, 28 (32%) of the landraces had seedling resistance and 41 (52%) had high-temperature adult-plant (HTAP) resistance. When tested with Pakistan isolate PK07-2, 14 (13%) of the wheat genotypes had seedling resistance and 61 (53%) had HTAP resistance. In the test with Pakistan isolate PK07-6, 32 (40%) had seedling resistance and 38 (48%) had HTAP resistance. In field tests, 94 (86%) genotypes were resistant and four (4%) were intermediate at Pullman, Washington; and 72 (89%) were resistant and none was intermediate at Mount Vernon, Washington. The greenhouse and field tests revealed that the majority of the wheat landraces possess HTAP resistance against stripe rust. These landraces should be useful genetic resources for developing stripe rust resistant cultivars in regions where climatic conditions are suitable for the expression of the durable type of resistance.
C1 [Bux, Hadi] Univ Sindh, Inst Plant Sci, Jamshoro 76080, Pakistan.
[Ashraf, Muhammad] Natl Univ Sci & Technol, NUST Ctr Virol & Immunol, Islamabad 44000, Pakistan.
[Chen, Xianming] Washington State Univ, USDA ARS, Wheat Genet Qual Physiol & Dis Res Unit, Pullman, WA 99164 USA.
[Chen, Xianming] Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
RP Bux, H (reprint author), Univ Sindh, Inst Plant Sci, Jamshoro 76080, Pakistan.
EM hadiqau@gmail.com
FU Higher Education Commission (HEC) Pakistan
FX We thank Higher Education Commission (HEC) Pakistan for financial
support for the research conducted. We are grateful to USDA-Agriculture
Research Service (ARS) National Small Grains Collections located at
Aberdeen, ID, (USA) for providing germplasm.
NR 34
TC 3
Z9 4
U1 1
U2 5
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0706-0661
J9 CAN J PLANT PATHOL
JI Can. J. Plant Pathol.-Rev. Can. Phytopathol.
PY 2012
VL 34
IS 1
BP 68
EP 74
DI 10.1080/07060661.2012.662998
PG 7
WC Plant Sciences
SC Plant Sciences
GA 936CE
UT WOS:000303567700010
ER
PT J
AU Zhao, CP
Tian, F
Yu, Y
Luo, J
Mitra, A
Zhan, F
Hou, YL
Liu, G
Zan, LS
Updike, MS
Song, JZ
AF Zhao, Chunping
Tian, Fei
Yu, Ying
Luo, Juan
Mitra, Apratim
Zhan, Fei
Hou, Yali
Liu, George
Zan, Linsen
Updike, M. Scott
Song, Jiuzhou
TI Functional Genomic Analysis of Variation on Beef Tenderness Induced by
Acute Stress in Angus Cattle
SO COMPARATIVE AND FUNCTIONAL GENOMICS
LA English
DT Article
ID MEAT QUALITY TRAITS; SKELETAL-MUSCLE; CUSTOMER SATISFACTION; CONSUMER
EVALUATIONS; EXPRESSION PATTERNS; CCR2-/-MICE; GENE; ASSOCIATION;
STEAKS; INFLAMMATION
AB Beef is one of the leading sources of protein, B vitamins, iron, and zinc in human food. Beef palatability is based on three general criteria: tenderness, juiciness, and flavor, of which tenderness is thought to be the most important factor. In this study, we found that beef tenderness, measured by the Warner-Bratzler shear force (WBSF), was dramatically increased by acute stress. Microarray analysis and qPCR identified a variety of genes that were differentially expressed. Pathway analysis showed that these genes were involved in immune response and regulation of metabolism process as activators or repressors. Further analysis identified that these changes may be related with CpG methylation of several genes. Therefore, the results from this study provide an enhanced understanding of the mechanisms that genetic and epigenetic regulations control meat quality and beef tenderness.
C1 [Zhao, Chunping; Zan, Linsen] NW A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Shaanxi, Peoples R China.
[Zhao, Chunping; Tian, Fei; Yu, Ying; Luo, Juan; Mitra, Apratim; Zhan, Fei; Hou, Yali; Updike, M. Scott; Song, Jiuzhou] Univ Maryland, Dept Anim & Avian Sci, College Pk, MD 20742 USA.
[Yu, Ying] China Agr Univ, Dept Anim Breeding & Genet, Coll Anim Sci, Beijing 100193, Peoples R China.
[Liu, George] USDA ARS, Bovine Funct Genom Lab, Anim & Nat Resources Inst, Beltsville, MD 20705 USA.
[Updike, M. Scott] USDA ARS, Standerds Div, Natl Organ Program, Washington, DC 20250 USA.
RP Zan, LS (reprint author), NW A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Shaanxi, Peoples R China.
EM zanls@yahoo.com.cn; songj88@umd.edu
FU Maryland Agricultural Experiment Station; Jorgensen Endowment Funds
FX The work was supported by the Maryland Agricultural Experiment Station
and the Jorgensen Endowment Funds.
NR 63
TC 8
Z9 8
U1 3
U2 21
PU HINDAWI PUBLISHING CORPORATION
PI NEW YORK
PA 410 PARK AVENUE, 15TH FLOOR, #287 PMB, NEW YORK, NY 10022 USA
SN 1531-6912
J9 COMP FUNCT GENOM
JI Compar. Funct. Genom.
PY 2012
AR 756284
DI 10.1155/2012/756284
PG 11
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Genetics & Heredity
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Genetics & Heredity
GA 938OV
UT WOS:000303743700001
ER
PT J
AU Bassett, CL
AF Bassett, Carole L.
TI Cajal Bodies and Plant RNA Metabolism
SO CRITICAL REVIEWS IN PLANT SCIENCES
LA English
DT Review
DE gene expression regulation; nuclear compartmentation; nucleolus; RNA
biogenesis and maturation; subnuclear particles
ID GREEN FLUORESCENT PROTEIN; SNORNA GENE CLUSTERS; ARABIDOPSIS-THALIANA;
COILED BODIES; MESSENGER-RNA; CELL-CYCLE; DNA-METHYLATION;
NUCLEAR-BODIES; POLYMERASE-IV; BOX C/D
AB Intracellular location of components associated with RNA metabolism is a key feature of gene expression regulation, although it is often neglected in favor of more direct factors influencing expression. A number of nuclear and subnuclear compartments exist, each carrying out specific functions. This article focuses on Cajal bodies, a dynamic body composed of numerous proteins and small RNAs. Cajal bodies, or CBs, are universal entities found in both the nucleolus and nucleoplasm of most living cells. Their function relates to RNA metabolism, including transcription, splicing, stable RNA modification, small RNA biogenesis, gene silencing, nonsense-mediated decay and telomere maintenance. It is generally thought that CBs form docking stations for each of these functions so that the individual processes proceed quickly and in an organized manner. A brief introduction on what is known about the function and composition of CBs in animal cells is provided, followed by highlights of the latest research on CBs in plants.
C1 ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
RP Bassett, CL (reprint author), ARS, USDA, Appalachian Fruit Res Stn, 2217 Wiltshire Rd, Kearneysville, WV 25430 USA.
EM Carole.Bassett@ars.usda.gov
NR 131
TC 2
Z9 2
U1 0
U2 11
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0735-2689
J9 CRIT REV PLANT SCI
JI Crit. Rev. Plant Sci.
PY 2012
VL 31
IS 3
BP 258
EP 270
DI 10.1080/07352689.2011.645431
PG 13
WC Plant Sciences
SC Plant Sciences
GA 935ZF
UT WOS:000303560000004
ER
PT B
AU Guo, BZ
Yu, JJ
Ni, XZ
Lee, RD
Kemerait, RC
Scully, BT
AF Guo, Baozhu
Yu, Jiujiang
Ni, Xinzhi
Lee, R. Dewey
Kemerait, Robert C.
Scully, Brian T.
BE Venkateswarlu, B
Shanker, AK
Shanker, C
Maheswari, M
TI Crop Stress and Aflatoxin Contamination: Perspectives and Prevention
Strategies
SO CROP STRESS AND ITS MANAGEMENT: PERSPECTIVES AND STRATEGIES
LA English
DT Article; Book Chapter
ID CORN-EARWORM LEPIDOPTERA; ASPERGILLUS EAR ROT; GT-MAS-GK; SOUTHEASTERN
UNITED-STATES; REGULATORY PROTEIN AFLR; MAIZE GERMPLASM;
GENE-EXPRESSION; SWEET CORN; PREHARVEST CORN; INSECT DAMAGE
AB The fungal metabolites called aflatoxins are potent naturally occurring carcinogens, produced primarily by Aspergillus flavus and A. parasiticus. A. flavus affects many agricultural crops such as maize, cotton, peanuts, and tree nuts. It can contaminate these crops with aflatoxins in the field before harvest. It is a serious concern because of its toxic and carcinogenic properties and also due to the risk of contamination in food and feed on human health and livestock. It is not only a serious food safety issue, but it has significant economic implications for the agricultural industry worldwide because of restrictions limiting the trade of contaminated crop. Host plant resistance is an effective, efficient and dependable tool to protect crops from the preharvest infection and aflatoxin contamination processes. Host plant resistance to aflatoxin contamination is a complex trait, and dissecting this trait is an equally complex task. With the technological breakthrough in genomics and next-generation sequencing, our understanding on the Aspergillus biology is greatly enhanced. This chapter aggregates the rich aflatoxin literature and focuses on the factors that cause the stress execrably and increase the aflatoxin contamination of grains before and after harvest. Further discussed are potential future prevention technology and strategies that could be employed to guide future research, such as "next-generation" genetics.
C1 [Guo, Baozhu; Scully, Brian T.] USDA ARS, Crop Protect & Management Res Unit, Tifton, GA 31793 USA.
[Yu, Jiujiang] USDA ARS, So Reg Res Ctr, New Orleans, LA USA.
[Ni, Xinzhi] USDA ARS, Crop Genet & Breeding Res Unit, Tifton, GA 31793 USA.
[Lee, R. Dewey] Univ Georgia, Dept Crop & Soil Sci, Tifton, GA USA.
[Kemerait, Robert C.] Univ Georgia, Dept Plant Pathol, Tifton, GA 31793 USA.
RP Guo, BZ (reprint author), USDA ARS, Crop Protect & Management Res Unit, Tifton, GA 31793 USA.
EM Baozhu.Guo@ars.usda.gov
NR 225
TC 6
Z9 6
U1 0
U2 8
PU SPRINGER
PI DORDRECHT
PA PO BOX 17, 3300 AA DORDRECHT, NETHERLANDS
BN 978-94-007-2219-4
PY 2012
BP 399
EP 427
DI 10.1007/978-94-007-2220-0_11
D2 10.1007/978-94-007-2220-0
PG 29
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA BAA22
UT WOS:000303483000011
ER
PT J
AU Sobota, DJ
Johnson, SL
Gregory, SV
Ashkenas, LR
AF Sobota, Daniel J.
Johnson, Sherri L.
Gregory, Stan V.
Ashkenas, Linda R.
TI A Stable Isotope Tracer Study of the Influences of Adjacent Land Use and
Riparian Condition on Fates of Nitrate in Streams
SO ECOSYSTEMS
LA English
DT Article
DE land use; streams; nitrate; nitrogen; spiraling; denitrification;
organic matter storage; N-15; isotope tracer; Oregon
ID AMMONIA DIFFUSION METHOD; FOREST STREAM; NITROGEN DYNAMICS; N-15
ADDITION; HEADWATER STREAMS; DESERT STREAM; DENITRIFICATION; ECOSYSTEMS;
REMOVAL; RETENTION
AB The influence of land use on potential fates of nitrate (NO3-) in stream ecosystems, ranging from denitrification to storage in organic matter, has not been documented extensively. Here, we describe the Pacific Northwest component of Lotic Intersite Nitrogen eXperiment, phase II (LINX II) to examine how land-use setting influences fates of NO3- in streams. We used 24 h releases of a stable isotope tracer ((NO3)-N-15-N) in nine streams flowing through forest, agricultural, and urban land uses to quantify NO3- uptake processes. NO3- uptake lengths varied two orders of magnitude (24-4247 m), with uptake rates (6.5-158.1 mg NO3-N m(-2) day(-1)) and uptake velocities (0.1-2.3 mm min(-1)) falling within the ranges measured in other LINX II regions. Denitrification removed 0-7% of added tracer from our streams. In forest streams, 60.4 to 77.0% of the isotope tracer was exported downstream as NO3-, with 8.0 to 14.8% stored in wood biofilms, epilithon, fine benthic organic matter, and bryophytes. Agricultural and urban streams with streamside forest buffers displayed hydrologic export and organic matter storage of tracer similar to those measured in forest streams. In agricultural and urban streams with a partial or no riparian buffer, less than 1 to 75% of the tracer was exported downstream; much of the remainder was taken up and stored in autotrophic organic matter components with short N turnover times. Our findings suggest restoration and maintenance of riparian forests can help re-establish the natural range of NO3- uptake processes in human-altered streams.
C1 [Sobota, Daniel J.; Gregory, Stan V.; Ashkenas, Linda R.] Oregon State Univ, Dept Fisheries & Wildlife, Corvallis, OR 97331 USA.
[Johnson, Sherri L.] US Forest Serv, Pacific NW Res Stn, Corvallis, OR 97331 USA.
RP Sobota, DJ (reprint author), Oregon State Univ, Dept Fisheries & Wildlife, 104 Nash Hall, Corvallis, OR 97331 USA.
EM Sobota.Dan@epa.gov
FU NSF (NSF DEB) [0111410]; National Science Foundation [DEB 08-23380,
0333257]; US Forest Service Pacific Northwest Research Station; Oregon
State University
FX We thank Pat Mulholland for his excellent leadership of the Lotic
Intersite Nitrogen eXperiment, phase II (LINX II;
http://www.biol.vt.edu/faculty/webster/linx/). Chris Irvin, Doreen
McIntosh, Jennifer Fairbrother, Holly Oakes-Miller, C. J. Poor, Morgan
Curtis, Steve Thomas, and members of the Oregon State Stream Team
provided field assistance. Cam Jones of the Cooperative Chemical
Analysis Laboratory (CCAL) at Oregon State University performed analysis
of water chemistry. Steve Hamilton and David Weed provided pre-evacuated
exetainers for gas collections; Ashley Helton provided summaries of
land-cover data. Peter Bottomley, Steven Perakis, David Hibbs, Jana
Compton, and three anonymous reviewers provided helpful comments on
earlier drafts. LINX II was supported by a grant from the NSF Ecosystems
Program to Oak Ridge National Laboratory (NSF DEB #0111410). The H. J.
Andrews Experimental Forest research program, funded by the National
Science Foundation's Long-Term Ecological Research Program (DEB
08-23380), the US Forest Service Pacific Northwest Research Station, and
Oregon State University provided additional support. A graduate
fellowship was provided to DJS through the NSF Ecosystem Informatics
IGERT program (NSF award #0333257) at Oregon State University. Research
sites were located on lands owned and managed by Oregon State
University, the city of Eugene, the city of Albany, the Weyerhaeuser
Corporation, and the U.S. Forest Service and the Peterson Family (on
Camp Creek).
NR 49
TC 11
Z9 13
U1 2
U2 50
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1432-9840
J9 ECOSYSTEMS
JI Ecosystems
PD JAN
PY 2012
VL 15
IS 1
BP 1
EP 17
DI 10.1007/s10021-011-9489-8
PG 17
WC Ecology
SC Environmental Sciences & Ecology
GA 936OZ
UT WOS:000303601200001
ER
PT J
AU Williamson, JC
Bestelmeyer, BT
Peters, DPC
AF Williamson, Jeb C.
Bestelmeyer, Brandon T.
Peters, Debra P. C.
TI Spatiotemporal Patterns of Production Can Be Used to Detect State Change
Across an Arid Landscape
SO ECOSYSTEMS
LA English
DT Article
DE aboveground net primary production; normalized difference vegetation
index; precipitation; remote sensing; Chihuahuan Desert; state change;
shrub encroachment; grassland; shrubland
ID NET PRIMARY PRODUCTION; CHIHUAHUAN DESERT; DESERTIFICATION ALTERS; WATER
AVAILABILITY; SEASONAL-VARIATION; WESTERN-AUSTRALIA; USE EFFICIENCY;
GREAT-BASIN; VEGETATION; GRASSLAND
AB Methods to detect and quantify shifts in the state of ecosystems are increasingly important as global change drivers push more systems toward thresholds of change. Temporal relationships between precipitation and aboveground net primary production (ANPP) have been studied extensively in arid and semiarid ecosystems, but rarely has spatial variation in these relationships been investigated at a landscape scale, and rarely has such information been viewed as a resource for mapping the distribution of different ecological states. We examined the broad-scale effects of a shift from grassland to shrubland states on spatiotemporal patterns of remotely sensed ANPP proxies in the northern Chihuahuan Desert. We found that the normalized difference vegetation index (NDVI), when averaged across an eight-year period, did not vary significantly between these states, despite changes in ecosystem attributes likely to influence water availability to plants. In contrast, temporal relationships between precipitation and time-integrated NDVI (NDVI-I) modeled on a per-pixel basis were sensitive to spatial variation in shrub canopy cover, a key attribute differentiating ecological states in the region. The slope of the relationship between annual NDVI-I and 2-year cumulative precipitation was negatively related to, and accounted for 71% of variation in, shrub canopy cover estimated at validation sites using high spatial resolution satellite imagery. These results suggest that remote sensing studies of temporal precipitation-NDVI relationships may be useful for deriving shrub canopy cover estimates in the region, as well as for mapping other ecological state changes characterized by shifts in long-term ANPP, plant functional type dominance, or both.
C1 [Williamson, Jeb C.; Bestelmeyer, Brandon T.; Peters, Debra P. C.] New Mexico State Univ, USDA ARS Jornada Expt Range, Las Cruces, NM 88003 USA.
RP Williamson, JC (reprint author), New Mexico State Univ, USDA ARS Jornada Expt Range, Las Cruces, NM 88003 USA.
EM jcwill@nmsu.edu
FU USDA [2007-38415-18637]; USDA-NRI [2008-35320-18684]; National Science
Foundation [DEB-0618210]
FX We would like to thank Jose Paruelo and two anonymous reviewers for
helpful comments on this manuscript. This study was funded by the USDA
Rangeland Research Program (2007-38415-18637) and the USDA-NRI Biology
of Weedy and Invasive Species program (2008-35320-18684). Funding
support was also provided by the National Science Foundation to New
Mexico State University as part of the Jornada Basin Long Term
Ecological Research Program (DEB-0618210).
NR 63
TC 7
Z9 7
U1 2
U2 42
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1432-9840
EI 1435-0629
J9 ECOSYSTEMS
JI Ecosystems
PD JAN
PY 2012
VL 15
IS 1
BP 34
EP 47
DI 10.1007/s10021-011-9490-2
PG 14
WC Ecology
SC Environmental Sciences & Ecology
GA 936OZ
UT WOS:000303601200003
ER
PT J
AU Talhelm, AF
Pregitzer, KS
Giardina, CP
AF Talhelm, Alan F.
Pregitzer, Kurt S.
Giardina, Christian P.
TI Long-Term Leaf Production Response to Elevated Atmospheric Carbon
Dioxide and Tropospheric Ozone
SO ECOSYSTEMS
LA English
DT Article
DE carbon dioxide; leaf area; long-term; nitrogen cycling; northern
temperate forests; ozone; stand age; species dominance
ID AIR CO2 ENRICHMENT; SPECIES-SPECIFIC RESPONSES; ACER-SACCHARUM
SEEDLINGS; BETULA-PENDULA ROTH; PAPER BIRCH; FOREST PRODUCTIVITY;
TREMBLING ASPEN; NITROGEN UPTAKE; SUGAR MAPLE; LITTER PRODUCTION
AB Elevated concentrations of atmospheric CO2 and tropospheric O-3 will profoundly influence future forest productivity, but our understanding of these influences over the long-term is poor. Leaves are key indicators of productivity and we measured the mass, area, and nitrogen concentration of leaves collected in litter traps from 2002 to 2008 in three young northern temperate forest communities exposed to elevated CO2 and/or elevated O-3 since 1998. On average, the overall effect of elevated CO2 (+CO2 and +CO2+O-3 versus ambient and +O-3) was to increase leaf mass by 36% whereas the overall effect of elevated O-3 was to decrease leaf mass by 13%, with similar effects on stand leaf area. However, there were important CO2 x O-3 x year interactions wherein some treatment effects on leaf mass changed dramatically relative to ambient from 2002 to 2008. For example, stimulation by the +CO2 treatment decreased (from +52 to +25%), whereas the deleterious effects of the +O-3 treatment increased (from -5 to -18%). In comparison, leaf mass in the +CO2+O-3 treatment was similar to ambient throughout the study. Forest composition influenced these responses: effects of the +O-3 treatment on community-level leaf mass ranged from +2 to -19%. These findings are evidence that community composition, stand development processes, CO2, and O-3 strongly interact. Changes in leaf nitrogen concentration were inconsistent, but leaf nitrogen mass (g m(-2)) was increased by elevated CO2 (+30%) and reduced by elevated O-3 (-16%), consistent with observations that nitrogen cycling is accelerated by elevated CO2 but retarded by elevated O-3