CRAN Package Check Results for Maintainer ‘Sylvain Piry <sylvain.piry at inrae.fr>’

Last updated on 2026-05-02 09:50:49 CEST.

Package ERROR OK
mapi 3 10

Package mapi

Current CRAN status: ERROR: 3, OK: 10

Version: 1.1.4
Check: tests
Result: ERROR Running 'testthat.R' [74s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.950, system: 0.040, elapsed: 2.000 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 11.910, system: 0.040, elapsed: 11.950 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.250, system: 0.000, elapsed: 0.250 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 6.280, system: 1.060, elapsed: 7.310 seconds] Computing values for grid cells... ... done. [user: 0.180, system: 0.000, elapsed: 0.180 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.440, system: 1.170, elapsed: 22.600 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.970, system: 0.110, elapsed: 2.060 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 11.820, system: 0.000, elapsed: 11.850 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.280, system: 0.000, elapsed: 0.280 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 6.470, system: 0.800, elapsed: 7.180 seconds] Computing values for grid cells... ... done. [user: 0.170, system: 0.000, elapsed: 0.170 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.480, system: 0.930, elapsed: 22.320 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 2.000, system: 0.060, elapsed: 2.060 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 11.740, system: 0.030, elapsed: 11.770 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.210, system: 0.020, elapsed: 0.250 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 6.590, system: 1.170, elapsed: 7.670 seconds] Computing values for grid cells... ... done. [user: 0.170, system: 0.000, elapsed: 0.180 seconds] Starting 4 permutations... ... parallelized over 2 cores ... ... computing probabilities from permuted values ... ... done. [user: 0.480, system: 0.090, elapsed: 1.800 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 22.250, system: 1.410, elapsed: 24.800 seconds] Building local cartesian grid... Flavor: r-devel-windows-x86_64

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [102s/555s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Linking to GEOS 3.14.1, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.559, system: 0.041, elapsed: 2.520 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.514, system: 0.068, elapsed: 14.613 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.218, system: 0.018, elapsed: 1.014 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 7.307, system: 0.828, elapsed: 107.650 seconds] Computing values for grid cells... ... done. [user: 0.195, system: 0.007, elapsed: 0.191 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 19.461, system: 0.997, elapsed: 126.918 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.725, system: 0.049, elapsed: 2.162 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.371, system: 0.062, elapsed: 12.732 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.220, system: 0.014, elapsed: 0.324 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.311, system: 0.763, elapsed: 63.367 seconds] Computing values for grid cells... ... done. [user: 0.185, system: 0.005, elapsed: 0.188 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 20.650, system: 0.962, elapsed: 79.409 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.623, system: 0.044, elapsed: 2.810 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.548, system: 0.059, elapsed: 16.367 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.228, system: 0.014, elapsed: 1.077 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 7.194, system: 0.819, elapsed: 125.239 seconds] Computing values for grid cells... ... done. [user: 0.174, system: 0.003, elapsed: 0.252 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.269, system: 0.245, elapsed: 1.275 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 20.721, system: 1.218, elapsed: 148.009 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.514, system: 0.031, elapsed: 2.598 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.613, system: 0.058, elapsed: 14.394 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.229, system: 0.017, elapsed: 1.000 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 7.188, system: 0.867, elapsed: 131.475 seconds] Computing values for grid cells... ... done. [user: 0.171, system: 0.002, elapsed: 0.187 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 11.751, system: 0.641, elapsed: 40.138 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 31.160, system: 1.642, elapsed: 190.856 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells Saving _problems/test-MAPI_Varicell-15.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512. Differences: `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-x86_64

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [108s/574s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.755, system: 0.097, elapsed: 4.952 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.754, system: 0.082, elapsed: 24.501 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.218, system: 0.021, elapsed: 1.211 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 7.238, system: 0.940, elapsed: 181.829 seconds] Computing values for grid cells... ... done. [user: 0.189, system: 0.006, elapsed: 0.505 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 19.762, system: 1.182, elapsed: 214.557 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.605, system: 0.033, elapsed: 4.676 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.678, system: 0.086, elapsed: 24.615 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.226, system: 0.018, elapsed: 1.167 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 7.216, system: 0.891, elapsed: 178.375 seconds] Computing values for grid cells... ... done. [user: 0.171, system: 0.004, elapsed: 0.592 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 19.474, system: 1.054, elapsed: 210.998 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.597, system: 0.042, elapsed: 5.736 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.723, system: 0.108, elapsed: 26.986 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.218, system: 0.015, elapsed: 0.972 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 7.022, system: 0.781, elapsed: 61.881 seconds] Computing values for grid cells... ... done. [user: 0.192, system: 0.007, elapsed: 0.248 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.392, system: 0.323, elapsed: 1.382 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 20.839, system: 1.304, elapsed: 98.883 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.692, system: 0.050, elapsed: 2.315 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.670, system: 0.072, elapsed: 11.134 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.335, system: 0.030, elapsed: 0.234 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 9.501, system: 1.026, elapsed: 6.963 seconds] Computing values for grid cells... ... done. [user: 0.203, system: 0.006, elapsed: 0.211 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 14.436, system: 0.975, elapsed: 14.535 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 36.710, system: 2.206, elapsed: 36.255 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells Saving _problems/test-MAPI_Varicell-15.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512. Differences: `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64